Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000635

Physical Location & Seq

Genomic Coordinates Forward (+)

2659695 .. 2661064

Gene Structure 1370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG037800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGACGCCCTTTCAGTTATGCTTTTCATGATTCTACCACTTTTGTTACCAGCTAGCGTTTCTGGTGCAGATCCTCTTGACACTTTTTGCTCACCTGATGCCAGTATCTACACTCATAGCAGCCAATTTGAAAGTAATCTCAAGCAGCTCCTTGAGTCATTGTCATTCAACACTTCCATCTCCGGTGGTTTCTACAATGACACAATCGGCACTGGCCGTGACAGAGTATATGGACAAACACTTTGTAGAGGGGATGTGAACTCCACGGTTTGTCAGAAATGTGTAAGTGATGCAAGCCGGGAAATCTTCAACAATTGTAACTCTACAGATGCATTGATCTGGTATGAACTATGTCAAGTTCGCTATTCCTACCAGATGTTCTTTTCGTCGATGTCTTATACTGGGAAGTACCCGGCCCAGAATGATCAGGAGGAGAGTGTATCAGATTCAAATTATTTTGGTGATGTTTTAATGTATTTAATGAATAACCTCTCCGGAGAGTCTCTGTTTACTCCTCCAAAGAAAATGTTTGCAACTGGTGAAATTGAGCTTTCGGGAAATAGAATTATTTATGGTCTGGAACAGTGCACCAGAGACATCTCTGAAAGTGACTGCAAACACTGTCTGGTTTATGCTTTAGGGGATCTTTCATCATGCTGCTCCTCTCGTAAAGGTGGAACTGTAGTCAGTAGAAATTGTAATGTGAGGTTTGAGATCTCCCGGTTTTTTAATGACACTTCAAGCAGTCGGTTAATTTATCCATATTCAAAAGGGGATGACAGGAAGACTTGGAAGGTGGTGGTTACATGTGCATCCGCTATACTATTTGCAGTTCTAGCTGTACTTTGTGCAGTTCATTTTCGACGGCAAAAGAGATTGAAAAATGTCAACGATGAAGAGATCAGAAGCGAGCATGTACTATTACATGATCTGGCAAGTCCCACTGAAGTAACAATTACAGAAGAAGGCGTATTGGTGACTTCTGAGGAACTGCCATTCGTTGATGTAGCAACTATAAAAATAGCTACAGATGACTTTTCAGATTCCAACAAGCTTGGACAAGGTGGGTTTGGTACTGTTTACAAGGTAATGCTGCTATTTATTATATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3403 Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

370

Amino Acids

41.18

Weight (kDa)

4.96

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	30 - 123	4.6e-22	Salt stress response/antifungal
Stress-antifung	PF01657	145 - 238	5.5e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000635)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica	MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica	Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis	pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis	RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata	RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora	Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa	Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha	Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana	Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	494
AciI	CCGC	1 cut(s)	816
AclWI	GGATC	2 cut(s)	65, 651
AcoI	YGGCCR	1 cut(s)	214
AcuI	CTGAAG	1 cut(s)	966
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	4 cut(s)	410, 843, 918, 1075
AflIII	ACRYGT	1 cut(s)	806
AgsI	TTSAA	7 cut(s)	131, 169, 310, 450, 741, 768, 880
AluBI	AGCT	6 cut(s)	53, 148, 550, 839, 1025, 1054
AluI	AGCT	6 cut(s)	53, 148, 550, 839, 1025, 1054
Alw21I	GWGCWC	1 cut(s)	590
Alw26I	GTCTC	2 cut(s)	507, 588
Alw44I	GTGCAC	1 cut(s)	586
AlwI	GGATC	2 cut(s)	65, 651
Aor13HI	TCCGGA	1 cut(s)	494
AoxI	GGCC	2 cut(s)	214, 414
ApaLI	GTGCAC	1 cut(s)	586
ApeKI	GCWGC	4 cut(s)	120, 145, 657, 1093
ArsI	GACNNNNNNTTYG	2 cut(s)	225, 257
AspS9I	GGNCC	1 cut(s)	415
AsuC2I	CCSGG	3 cut(s)	299, 413, 721
AsuHPI	GGTGA	4 cut(s)	84, 473, 551, 988
AsuNHI	GCTAGC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	590
BbsI	GAAGAC	1 cut(s)	791
Bbv12I	GWGCWC	1 cut(s)	590
BbvI	GCAGC	4 cut(s)	132, 157, 644, 1080
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	2 cut(s)	201, 881
BclI	TGATCA	1 cut(s)	424
BcnI	CCSGG	3 cut(s)	299, 413, 721
BcoDI	GTCTC	2 cut(s)	507, 588
BfaI	CTAG	2 cut(s)	54, 836
BfmI	CTRYAG	3 cut(s)	324, 681, 1026
BglII	AGATCT	1 cut(s)	714
BisI	GCNGC	4 cut(s)	121, 146, 658, 1094
BlsI	GCNGC	4 cut(s)	122, 147, 659, 1095
Bme1390I	CCNGG	3 cut(s)	299, 413, 721
BmgT120I	GGNCC	1 cut(s)	415
BmrFI	CCNGG	3 cut(s)	299, 413, 721
BmrI	ACTGGG	1 cut(s)	411
BmsI	GCATC	4 cut(s)	88, 280, 319, 821
BmtI	GCTAGC	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	791
BpuEI	CTTGAG	2 cut(s)	125, 173
BpuMI	CCSGG	3 cut(s)	299, 413, 721
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	2 cut(s)	182, 494
Bse1I	ACTGG	4 cut(s)	102, 217, 406, 541
BseAI	TCCGGA	1 cut(s)	494
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	3 cut(s)	259, 781, 812
BseMII	CTCAG	1 cut(s)	975
BseNI	ACTGG	4 cut(s)	102, 217, 406, 541
BseRI	GAGGAG	3 cut(s)	446, 504, 652
BseSI	GKGCMC	1 cut(s)	590
BseXI	GCAGC	4 cut(s)	132, 157, 644, 1080
BsgI	GTGCAG	2 cut(s)	87, 870
BshFI	GGCC	2 cut(s)	216, 416
BsiHKAI	GWGCWC	1 cut(s)	590
BsiSI	CCGG	5 cut(s)	183, 298, 413, 495, 721
BslFI	GGGAC	1 cut(s)	924
BsmAI	GTCTC	2 cut(s)	507, 588
BsmFI	GGGAC	1 cut(s)	924
BsnI	GGCC	2 cut(s)	216, 416
Bsp1286I	GDGCHC	1 cut(s)	590
Bsp13I	TCCGGA	1 cut(s)	494
Bsp143I	GATC	7 cut(s)	70, 336, 424, 643, 714, 900, 928
BspACI	CCGC	1 cut(s)	816
BspANI	GGCC	2 cut(s)	216, 416
BspCNI	CTCAG	1 cut(s)	976
BspEI	TCCGGA	1 cut(s)	494
BspHI	TCATGA	1 cut(s)	27
BspOI	GCTAGC	1 cut(s)	57
BspPI	GGATC	2 cut(s)	65, 651
BsrI	ACTGG	4 cut(s)	102, 217, 406, 541
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	7 cut(s)	70, 336, 424, 643, 714, 900, 928
BssNI	GRCGYC	1 cut(s)	6
Bst4CI	ACNGT	5 cut(s)	268, 585, 623, 682, 1078
Bst6I	CTCTTC	1 cut(s)	891
BstACI	GRCGYC	1 cut(s)	6
BstC8I	GCNNGC	3 cut(s)	55, 295, 911
BstDEI	CTNAG	1 cut(s)	984
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	3 cut(s)	259, 781, 812
BstKTI	GATC	7 cut(s)	73, 339, 427, 646, 717, 903, 931
BstMAI	GTCTC	2 cut(s)	507, 588
BstMBI	GATC	7 cut(s)	70, 336, 424, 643, 714, 900, 928
BstMWI	GCNNNNNNNGC	1 cut(s)	836
BstNSI	RCATGY	2 cut(s)	810, 917
BstSCI	CCNGG	3 cut(s)	297, 411, 719
BstSFI	CTRYAG	3 cut(s)	324, 681, 1026
BstSLI	GKGCMC	1 cut(s)	590
BstV1I	GCAGC	4 cut(s)	132, 157, 644, 1080
BstV2I	GAAGAC	1 cut(s)	791
BstX2I	RGATCY	3 cut(s)	70, 643, 714
BstYI	RGATCY	3 cut(s)	70, 643, 714
BsuRI	GGCC	2 cut(s)	216, 416
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	3 cut(s)	259, 781, 812
BtsIMutI	CAGTG	4 cut(s)	210, 590, 619, 942
Cac8I	GCNNGC	3 cut(s)	55, 295, 911
CciI	TCATGA	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	415
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	4 cut(s)	409, 842, 917, 1074
CviAII	CATG	5 cut(s)	28, 654, 807, 914, 926
CviQI	GTAC	4 cut(s)	409, 842, 917, 1074
DdeI	CTNAG	1 cut(s)	984
DpnI	GATC	7 cut(s)	72, 338, 426, 645, 716, 902, 930
DpnII	GATC	7 cut(s)	70, 336, 424, 643, 714, 900, 928
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	891
EarI	CTCTTC	1 cut(s)	891
Eco57I	CTGAAG	1 cut(s)	966
EcoT22I	ATGCAT	1 cut(s)	334
FaeI	CATG	5 cut(s)	31, 657, 810, 917, 929
FaqI	GGGAC	1 cut(s)	924
FatI	CATG	5 cut(s)	27, 653, 806, 913, 925
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	4 cut(s)	121, 146, 658, 1094
FokI	GGATG	3 cut(s)	266, 788, 799
Fsp4HI	GCNGC	4 cut(s)	121, 146, 658, 1094
FspBI	CTAG	2 cut(s)	54, 836
GluI	GCNGC	4 cut(s)	121, 146, 658, 1094
HaeIII	GGCC	2 cut(s)	216, 416
HapII	CCGG	5 cut(s)	183, 298, 413, 495, 721
HgaI	GACGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	5 cut(s)	31, 657, 810, 917, 929
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HindIII	AAGCTT	1 cut(s)	1052
HinfI	GANTC	5 cut(s)	31, 155, 446, 500, 1043
HpaII	CCGG	5 cut(s)	183, 298, 413, 495, 721
HphI	GGTGA	4 cut(s)	84, 473, 551, 988
Hpy166II	GTNNAC	5 cut(s)	259, 510, 588, 889, 1081
Hpy188I	TCNGA	6 cut(s)	276, 445, 604, 905, 985, 1042
Hpy188III	TCNNGA	6 cut(s)	28, 77, 428, 495, 555, 578
Hpy8I	GTNNAC	5 cut(s)	259, 510, 588, 889, 1081
Hpy99I	CGWCG	2 cut(s)	391, 867
HpyAV	CCTTC	2 cut(s)	787, 959
HpyCH4III	ACNGT	5 cut(s)	268, 585, 623, 682, 1078
HpyCH4V	TGCA	9 cut(s)	68, 293, 332, 533, 588, 615, 812, 830, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	836
HpyF3I	CTNAG	1 cut(s)	984
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	5 cut(s)	31, 657, 810, 917, 929
Kpn2I	TCCGGA	1 cut(s)	494
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	7 cut(s)	70, 336, 424, 643, 714, 900, 928
LmnI	GCTCC	2 cut(s)	153, 665
Lsp1109I	GCAGC	4 cut(s)	132, 157, 644, 1080
LweI	GCATC	4 cut(s)	88, 280, 319, 821
MaeI	CTAG	2 cut(s)	54, 836
MaeIII	GTNAC	7 cut(s)	45, 218, 317, 608, 802, 949, 976
MalI	GATC	7 cut(s)	72, 338, 426, 645, 716, 902, 930
MboI	GATC	7 cut(s)	70, 336, 424, 643, 714, 900, 928
MboII	GAAGA	4 cut(s)	298, 796, 908, 974
MfeI	CAATTG	1 cut(s)	313
MflI	RGATCY	3 cut(s)	70, 643, 714
MhlI	GDGCHC	1 cut(s)	590
MluCI	AATT	8 cut(s)	125, 313, 451, 543, 564, 694, 753, 954
MlyI	GAGTC	2 cut(s)	164, 509
MmeI	TCCRAC	1 cut(s)	1071
MnlI	CCTC	8 cut(s)	84, 242, 424, 500, 525, 673, 699, 979
Mph1103I	ATGCAT	1 cut(s)	334
MroI	TCCGGA	1 cut(s)	494
MseI	TTAA	4 cut(s)	470, 479, 729, 752
MspI	CCGG	5 cut(s)	183, 298, 413, 495, 721
MspR9I	CCNGG	3 cut(s)	299, 413, 721
MunI	CAATTG	1 cut(s)	313
MwoI	GCNNNNNNNGC	1 cut(s)	836
NciI	CCSGG	3 cut(s)	299, 413, 721
NdeII	GATC	7 cut(s)	70, 336, 424, 643, 714, 900, 928
NheI	GCTAGC	1 cut(s)	53
NlaIII	CATG	5 cut(s)	31, 657, 810, 917, 929
NmuCI	GTSAC	3 cut(s)	218, 608, 976
NsiI	ATGCAT	1 cut(s)	334
NspI	RCATGY	2 cut(s)	810, 917
PagI	TCATGA	1 cut(s)	27
PciI	ACATGT	1 cut(s)	806
PfeI	GAWTC	3 cut(s)	31, 446, 1043
PkrI	GCNGC	4 cut(s)	122, 147, 659, 1095
PleI	GAGTC	2 cut(s)	163, 508
PpsI	GAGTC	2 cut(s)	163, 508
PscI	ACATGT	1 cut(s)	806
PspPI	GGNCC	1 cut(s)	415
PsuI	RGATCY	3 cut(s)	70, 643, 714
RsaI	GTAC	4 cut(s)	410, 843, 918, 1075
RsaNI	GTAC	4 cut(s)	409, 842, 917, 1074
SaqAI	TTAA	4 cut(s)	470, 479, 729, 752
SatI	GCNGC	4 cut(s)	121, 146, 658, 1094
Sau3AI	GATC	7 cut(s)	70, 336, 424, 643, 714, 900, 928
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	2 cut(s)	164, 509
ScrFI	CCNGG	3 cut(s)	299, 413, 721
SduI	GDGCHC	1 cut(s)	590
SfaNI	GCATC	4 cut(s)	88, 280, 319, 821
SfcI	CTRYAG	3 cut(s)	324, 681, 1026
SmlI	CTYRAG	2 cut(s)	140, 152
SmoI	CTYRAG	2 cut(s)	140, 152
Sse9I	AATT	8 cut(s)	125, 313, 451, 543, 564, 694, 753, 954
SsiI	CCGC	1 cut(s)	816
SspMI	CTAG	2 cut(s)	54, 836
StyD4I	CCNGG	3 cut(s)	297, 411, 719
TaaI	ACNGT	5 cut(s)	268, 585, 623, 682, 1078
TaqI	TCGA	2 cut(s)	389, 862
TasI	AATT	8 cut(s)	125, 313, 451, 543, 564, 694, 753, 954
TatI	WGTACW	2 cut(s)	841, 916
TfiI	GAWTC	3 cut(s)	31, 446, 1043
Tru1I	TTAA	4 cut(s)	470, 479, 729, 752
Tru9I	TTAA	4 cut(s)	470, 479, 729, 752
TscAI	CASTG	4 cut(s)	217, 590, 626, 949
TseFI	GTSAC	3 cut(s)	218, 608, 976
TseI	GCWGC	4 cut(s)	120, 145, 657, 1093
Tsp45I	GTSAC	3 cut(s)	218, 608, 976
TspDTI	ATGAA	6 cut(s)	16, 360, 497, 639, 845, 909
TspRI	CASTG	4 cut(s)	217, 590, 626, 949
VneI	GTGCAC	1 cut(s)	586
XceI	RCATGY	2 cut(s)	810, 917
XspI	CTAG	2 cut(s)	54, 836
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.