Rh5DG036600

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
2559458 .. 2561277
1820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG036600.1

Sequence Viewer

Length: 945 bp
ATGGATACGCTTTCAGTTATGCTTTTCATGATTCTACCACTTTTGTTACCAGCTACCGTTTCTGGTGCAGATCCACTTTCCACTTTTTGCTCAGATGATGGCATCATCTACACTCCTGGCAGCCAATTTGAAAGTAATCTCAAGCAGCTCCTTGAGTCATTGTCATCCAACACTTCCGTCTTCGGTGGTTTCTACAACGACACAATTGGCACTAGCCGTGACAGAGTCTATGGACAAACACTTTGTAGAGGGGATGTGAGCTCCACAGCTTGTCAGAAATGTGTGAGTGATGCAAGCCAGGAAATCTTCAACAGTTGTAAATCTAGAGATGCATTGATCTGGTATGAACTATGTCAAGTTCGCTATTCCTACCAGATGTTCTTTTCGTCGATGACTTATACTGGGAAGTACCCGGACCAGAATAATCAGCAGAAGAATGTATCAGATGCACATTATTTTGGTGATGTTTTGTGGTATTTAATGAATAACCTCTCCGGAGAGTCTCTGTTTACTCCTCCAAAGAAAATGTTTGCAACTGGTGATATTGAGCTTTCGGGAAATAGAATTATTTATGGTCTGGAACAGTGCACCAGAGACATCTCTGAAAGAGACTGCAATAACTGTCTGGTTTTTGCTTTAGAGGATCTTTCATCATGCTGCTCCTTTCATCAAGGTGGAACTGTAGTCAGTAGAAATTGTAATGTGAGGTTTGAGATCTCCCGGTTTTTTAATGACACTTCAAGCAGTCGGTTAATTTATCCATATTCAAAAGGGGATGACAGGAAGACTTGGAAGGTGGTGGTTACATGTGCATCCGCTATACTATTTGCAGTTCTAGTTGTACTTTGTGCAGTTCATTTTCGACGGCAAAAGAGATTGAAAAATGTCAACGGTACAAAGATGATGAAAACTGTGGTTATTCTGAGTTTATGCAGGATTACCTAG

Protein Analysis

314

Amino Acids

35.31

Weight (kDa)

7.85

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 30 - 124 5.6e-23 Salt stress response/antifungal
Stress-antifung PF01657 142 - 238 8.9e-12 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 494
AciI CCGC 1 cut(s) 816
AclWI GGATC 2 cut(s) 65, 651
AfaI GTAC 3 cut(s) 410, 843, 895
AflIII ACRYGT 1 cut(s) 806
AgsI TTSAA 5 cut(s) 131, 310, 741, 768, 880
AjnI CCWGG 2 cut(s) 115, 297
AluBI AGCT 5 cut(s) 53, 148, 261, 269, 550
AluI AGCT 5 cut(s) 53, 148, 261, 269, 550
Alw21I GWGCWC 2 cut(s) 263, 590
Alw26I GTCTC 3 cut(s) 507, 588, 603
Alw44I GTGCAC 1 cut(s) 586
AlwI GGATC 2 cut(s) 65, 651
Aor13HI TCCGGA 1 cut(s) 494
ApaLI GTGCAC 1 cut(s) 586
ApeKI GCWGC 3 cut(s) 120, 145, 657
ArsI GACNNNNNNTTYG 2 cut(s) 225, 257
AspS9I GGNCC 1 cut(s) 415
AsuC2I CCSGG 2 cut(s) 413, 721
AsuHPI GGTGA 2 cut(s) 473, 551
AvaII GGWCC 1 cut(s) 415
BaeGI GKGCMC 1 cut(s) 590
BanII GRGCYC 1 cut(s) 263
BbsI GAAGAC 2 cut(s) 172, 791
Bbv12I GWGCWC 2 cut(s) 263, 590
BbvI GCAGC 3 cut(s) 132, 157, 644
BccI CCATC 1 cut(s) 92
BceAI ACGGC 2 cut(s) 201, 881
BciT130I CCWGG 2 cut(s) 117, 299
BcnI CCSGG 2 cut(s) 413, 721
BcoDI GTCTC 3 cut(s) 507, 588, 603
BfaI CTAG 4 cut(s) 213, 324, 836, 943
BfmI CTRYAG 1 cut(s) 681
BglII AGATCT 1 cut(s) 714
BisI GCNGC 3 cut(s) 121, 146, 658
BlsI GCNGC 3 cut(s) 122, 147, 659
Bme1390I CCNGG 4 cut(s) 117, 299, 413, 721
Bme18I GGWCC 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 415
BmrFI CCNGG 4 cut(s) 117, 299, 413, 721
BmrI ACTGGG 1 cut(s) 411
BmsI GCATC 5 cut(s) 111, 280, 319, 436, 821
BmuI ACTGGG 1 cut(s) 411
BpiI GAAGAC 2 cut(s) 172, 791
BpuEI CTTGAG 2 cut(s) 125, 173
BpuMI CCSGG 2 cut(s) 413, 721
BsaWI WCCGGW 1 cut(s) 494
Bse1I ACTGG 2 cut(s) 406, 541
BseAI TCCGGA 1 cut(s) 494
BseBI CCWGG 2 cut(s) 117, 299
BseGI GGATG 4 cut(s) 164, 259, 781, 812
BseMII CTCAG 2 cut(s) 105, 914
BseNI ACTGG 2 cut(s) 406, 541
BseRI GAGGAG 1 cut(s) 504
BseSI GKGCMC 1 cut(s) 590
BseXI GCAGC 3 cut(s) 132, 157, 644
BsgI GTGCAG 2 cut(s) 87, 870
BsiHKAI GWGCWC 2 cut(s) 263, 590
BsiSI CCGG 3 cut(s) 413, 495, 721
BsmAI GTCTC 3 cut(s) 507, 588, 603
Bsp1286I GDGCHC 2 cut(s) 263, 590
Bsp13I TCCGGA 1 cut(s) 494
Bsp143I GATC 4 cut(s) 70, 336, 643, 714
BspACI CCGC 1 cut(s) 816
BspCNI CTCAG 2 cut(s) 104, 915
BspEI TCCGGA 1 cut(s) 494
BspHI TCATGA 1 cut(s) 27
BspPI GGATC 2 cut(s) 65, 651
BsrI ACTGG 2 cut(s) 406, 541
BssMI GATC 4 cut(s) 70, 336, 643, 714
Bst2UI CCWGG 2 cut(s) 117, 299
Bst4CI ACNGT 7 cut(s) 58, 314, 585, 623, 682, 893, 913
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 2 cut(s) 91, 923
BstF5I GGATG 4 cut(s) 164, 259, 781, 812
BstKTI GATC 4 cut(s) 73, 339, 646, 717
BstMAI GTCTC 3 cut(s) 507, 588, 603
BstMBI GATC 4 cut(s) 70, 336, 643, 714
BstNI CCWGG 2 cut(s) 117, 299
BstNSI RCATGY 1 cut(s) 810
BstSCI CCNGG 4 cut(s) 115, 297, 411, 719
BstSFI CTRYAG 1 cut(s) 681
BstSLI GKGCMC 1 cut(s) 590
BstV1I GCAGC 3 cut(s) 132, 157, 644
BstV2I GAAGAC 2 cut(s) 172, 791
BstX2I RGATCY 3 cut(s) 70, 643, 714
BstYI RGATCY 3 cut(s) 70, 643, 714
BtsCI GGATG 4 cut(s) 164, 259, 781, 812
BtsIMutI CAGTG 1 cut(s) 590
Cac8I GCNNGC 1 cut(s) 295
CciI TCATGA 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 415
Csp6I GTAC 3 cut(s) 409, 842, 894
CviAII CATG 3 cut(s) 28, 654, 807
CviJI RGCY 8 cut(s) 53, 123, 148, 216, 261, 269, 297, 550
CviKI_1 RGCY 8 cut(s) 53, 123, 148, 216, 261, 269, 297, 550
CviQI GTAC 3 cut(s) 409, 842, 894
DdeI CTNAG 2 cut(s) 91, 923
DpnI GATC 4 cut(s) 72, 338, 645, 716
DpnII GATC 4 cut(s) 70, 336, 643, 714
Ecl136II GAGCTC 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 415
Eco53kI GAGCTC 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 261
EcoRII CCWGG 2 cut(s) 115, 297
EcoT22I ATGCAT 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 263
FaeI CATG 3 cut(s) 31, 657, 810
FatI CATG 3 cut(s) 27, 653, 806
Fnu4HI GCNGC 3 cut(s) 121, 146, 658
FokI GGATG 4 cut(s) 151, 266, 788, 799
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 3 cut(s) 121, 146, 658
FspBI CTAG 4 cut(s) 213, 324, 836, 943
GluI GCNGC 3 cut(s) 121, 146, 658
HapII CCGG 3 cut(s) 413, 495, 721
Hin1II CATG 3 cut(s) 31, 657, 810
HincII GTYRAC 1 cut(s) 889
HindII GTYRAC 1 cut(s) 889
HinfI GANTC 4 cut(s) 31, 155, 225, 500
HpaII CCGG 3 cut(s) 413, 495, 721
HphI GGTGA 2 cut(s) 473, 551
Hpy166II GTNNAC 3 cut(s) 510, 588, 889
Hpy188I TCNGA 5 cut(s) 94, 276, 445, 604, 924
Hpy188III TCNNGA 5 cut(s) 28, 324, 495, 555, 578
Hpy8I GTNNAC 3 cut(s) 510, 588, 889
Hpy99I CGWCG 2 cut(s) 391, 867
HpyAV CCTTC 1 cut(s) 787
HpyCH4III ACNGT 7 cut(s) 58, 314, 585, 623, 682, 893, 913
HpyF3I CTNAG 2 cut(s) 91, 923
Hsp92II CATG 3 cut(s) 31, 657, 810
Kpn2I TCCGGA 1 cut(s) 494
Kzo9I GATC 4 cut(s) 70, 336, 643, 714
LmnI GCTCC 3 cut(s) 153, 266, 665
Lsp1109I GCAGC 3 cut(s) 132, 157, 644
LweI GCATC 5 cut(s) 111, 280, 319, 436, 821
MaeI CTAG 4 cut(s) 213, 324, 836, 943
MaeIII GTNAC 3 cut(s) 45, 218, 802
MalI GATC 4 cut(s) 72, 338, 645, 716
MboI GATC 4 cut(s) 70, 336, 643, 714
MboII GAAGA 4 cut(s) 172, 298, 445, 796
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 3 cut(s) 70, 643, 714
MhlI GDGCHC 2 cut(s) 263, 590
MluCI AATT 5 cut(s) 125, 204, 564, 694, 753
MlyI GAGTC 3 cut(s) 164, 234, 509
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 5 cut(s) 242, 500, 525, 634, 699
Mph1103I ATGCAT 1 cut(s) 334
MroI TCCGGA 1 cut(s) 494
MseI TTAA 3 cut(s) 479, 729, 752
MslI CAYNNNNRTG 1 cut(s) 672
MspI CCGG 3 cut(s) 413, 495, 721
MspR9I CCNGG 4 cut(s) 117, 299, 413, 721
MunI CAATTG 1 cut(s) 204
MvaI CCWGG 2 cut(s) 117, 299
NciI CCSGG 2 cut(s) 413, 721
NdeII GATC 4 cut(s) 70, 336, 643, 714
NlaIII CATG 3 cut(s) 31, 657, 810
NmuCI GTSAC 1 cut(s) 218
NsiI ATGCAT 1 cut(s) 334
NspI RCATGY 1 cut(s) 810
PagI TCATGA 1 cut(s) 27
PciI ACATGT 1 cut(s) 806
PfeI GAWTC 1 cut(s) 31
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 3 cut(s) 122, 147, 659
PleI GAGTC 3 cut(s) 163, 233, 508
PpsI GAGTC 3 cut(s) 163, 233, 508
PscI ACATGT 1 cut(s) 806
Psp124BI GAGCTC 1 cut(s) 263
Psp6I CCWGG 2 cut(s) 115, 297
PspGI CCWGG 2 cut(s) 115, 297
PspPI GGNCC 1 cut(s) 415
PsuI RGATCY 3 cut(s) 70, 643, 714
PsyI GACNNNGTC 1 cut(s) 224
RsaI GTAC 3 cut(s) 410, 843, 895
RsaNI GTAC 3 cut(s) 409, 842, 894
RseI CAYNNNNRTG 1 cut(s) 672
SacI GAGCTC 1 cut(s) 263
SaqAI TTAA 3 cut(s) 479, 729, 752
SatI GCNGC 3 cut(s) 121, 146, 658
Sau3AI GATC 4 cut(s) 70, 336, 643, 714
Sau96I GGNCC 1 cut(s) 415
SchI GAGTC 3 cut(s) 164, 234, 509
ScrFI CCNGG 4 cut(s) 117, 299, 413, 721
SduI GDGCHC 2 cut(s) 263, 590
SfaNI GCATC 5 cut(s) 111, 280, 319, 436, 821
SfcI CTRYAG 1 cut(s) 681
SinI GGWCC 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 672
SmlI CTYRAG 2 cut(s) 140, 152
SmoI CTYRAG 2 cut(s) 140, 152
Sse9I AATT 5 cut(s) 125, 204, 564, 694, 753
SsiI CCGC 1 cut(s) 816
SspMI CTAG 4 cut(s) 213, 324, 836, 943
SstI GAGCTC 1 cut(s) 263
StyD4I CCNGG 4 cut(s) 115, 297, 411, 719
TaaI ACNGT 7 cut(s) 58, 314, 585, 623, 682, 893, 913
TaqI TCGA 2 cut(s) 389, 862
TasI AATT 5 cut(s) 125, 204, 564, 694, 753
TatI WGTACW 1 cut(s) 841
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 3 cut(s) 479, 729, 752
Tru9I TTAA 3 cut(s) 479, 729, 752
TscAI CASTG 1 cut(s) 590
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 3 cut(s) 120, 145, 657
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 7 cut(s) 16, 360, 497, 639, 656, 845, 920
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 1 cut(s) 590
Tth111I GACNNNGTC 1 cut(s) 224
VneI GTGCAC 1 cut(s) 586
VpaK11BI GGWCC 1 cut(s) 415
XbaI TCTAGA 1 cut(s) 323
XceI RCATGY 1 cut(s) 810
XspI CTAG 4 cut(s) 213, 324, 836, 943
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.