Rh5BG037200

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
2601920 .. 2604965
3046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG037200.1

Sequence Viewer

Length: 1569 bp
ATGTTTTATGGTGGGAAGCTTCCTGAGAAGAATAAGCAGGAGAAGAATGTATCAAATCCAAAGCAGTTAGTTGATGTTTTGAATAATTTAATGACAAAGCTCTTGGACCAGACTGCCTATACTTCTAAGGATATGTTTGCAACCGGCTATATGAAATTTTCAGGAAAGCAATCTATTTATGGCCTACAACAGTGCACTAGAGACATTTCTGAAGATGAATGCCATAACTGTTTGAATTCTGCTCTTGAGGAGCTTCAGGTATGCTGCTCTGCTCGTGAAGGTGGAACTGTTGTTAGCAATAATTGTAATGTGAGGTTTGAGCTCTACCGATTTTTCAACGACATTTCCAAAGGGGACAAGAGGAAGAGTTGGAAGGTGGTCGTTATATGTGTATCCACTATACTATCAGCAGTTTTCATTGTACTTTGTGCTGTCTATCTTCGGCGGGGAAGTGAATTGGAAAATGTCCAAGATGAAGAAAGAAGCAAGCATGGACTATTACCTGAATTATTAAACCCCACTGGAGTCACAATCATTGAAGAAGACAAAATGGTAAGTTCTGAAGAGCTGCCATTCATTGATCTAGCTACTGTAAGGAAAGCTACAGATGACTTTTCAGATTCGAACAAGCTTGGACAAGGTGGATTCGGTGCTGTTTACAAGGGTTGGCTAGATGGGAAAGAAGTAGCTGTTAAAAGACTATCAAGAAAGTCATGGCAAGGCTTAGAGGAGTTTAGAAATGAAGTCACTCTCATTGCAAAGCTTCAACACAGAAACCTCGTGCGGCTTTTGGCATGTGGCTTTGAGGGAGGAGAAAAGCTGCTTTTGTACGAGTTCATGCCAAATAAAAGCCTTGATACTTTTATCTTTGATTCGGAAAGACGAGCTGAACTCAATTGGCAAACATATCACAACATCATTGAAGGAATAGCCAGAGGACTTCTGTATCTTCATGAGGATTCCCGGCTTAAGATCATTCACAGGGACTTGAAGCCCAACAATGTGTTGTTGGACCATGAAATGGTTCCAAAAATATCAGACTTTGGAATGGCAAGGATATTTTGTGACAACCAGAACACTGCCAACACTAAAAGGGTTGTAGGAACACACGGCTACATGGCTCCTGAGTATGCAATGGAGGGACTATTTTCTGTAAAATCTGATGTTTTCAGCTTTGGAGTAGTCTTGCTTGAGATTATAAGTGGGAAAAAGAATAGTGGGTTCTACCTCACGGAACATGCCAAGACGCTCGTTGAATACGCATGGACACTATGGAAGGATGGAAAAGGGTCGGAGTTTGTGGAACCTTTGTTGATGGAATGTTGCCCGAAAGCGGACGTTTTGAAATACTTGCAGATTGCGCTTTTATGTGTCCAGGAAGACCCTGAAGAAAGACCAACAATGTCAGCTGTGGTTGTGTTGCTGGGAAATGATGACTCAATTGGTCTTCCTGAACCAAAGAAACCAGCCATATTTGCAATAGGTAGAGTTGCTCCAATAAACGAGTCTACACATACCGCTAATCCTACTTCAAATCAGCTCACTCTTTCCATTATTTCACCGAGGTGA

Protein Analysis

522

Amino Acids

58.78

Weight (kDa)

5.92

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 13 - 108 2e-12 Salt stress response/antifungal
Pkinase PF00069 206 - 471 2.7e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 208 - 473 2.8e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1199
AccB7I CCANNNNNTGG 1 cut(s) 1021
AccI GTMKAC 1 cut(s) 1508
AciI CCGC 4 cut(s) 445, 784, 1334, 1518
AcsI RAATTY 2 cut(s) 155, 235
AcuI CTGAAG 4 cut(s) 231, 239, 582, 1407
AfaI GTAC 2 cut(s) 423, 830
AfiI CCNNNNNNNGG 2 cut(s) 1021, 1333
AflII CTTAAG 1 cut(s) 968
AjnI CCWGG 1 cut(s) 1374
AleI CACNNNNGTG 1 cut(s) 1564
Alw21I GWGCWC 2 cut(s) 197, 324
Alw26I GTCTC 1 cut(s) 195
Alw44I GTGCAC 1 cut(s) 193
AoxI GGCC 1 cut(s) 181
ApaLI GTGCAC 1 cut(s) 193
ApeKI GCWGC 3 cut(s) 264, 568, 820
ApoI RAATTY 2 cut(s) 155, 235
Asp700I GAANNNNTTC 1 cut(s) 1023
AspLEI GCGC 1 cut(s) 1363
AspS9I GGNCC 2 cut(s) 106, 1012
AsuC2I CCSGG 1 cut(s) 964
AsuHPI GGTGA 1 cut(s) 1551
AsuII TTCGAA 1 cut(s) 623
AvaII GGWCC 2 cut(s) 106, 1012
BaeGI GKGCMC 1 cut(s) 197
BaeI ACNNNNGTAYC 2 cut(s) 929, 962
BanII GRGCYC 1 cut(s) 324
BauI CACGAG 2 cut(s) 273, 779
BbsI GAAGAC 3 cut(s) 549, 1386, 1439
Bbv12I GWGCWC 2 cut(s) 197, 324
BbvI GCAGC 3 cut(s) 251, 555, 807
BccI CCATC 3 cut(s) 668, 1274, 1309
BceAI ACGGC 1 cut(s) 1126
BciT130I CCWGG 1 cut(s) 1376
BciVI GTATCC 1 cut(s) 403
BcnI CCSGG 1 cut(s) 964
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 3 cut(s) 198, 584, 671
BfmI CTRYAG 1 cut(s) 603
BfrI CTTAAG 1 cut(s) 968
BfuI GTATCC 1 cut(s) 403
BisI GCNGC 4 cut(s) 265, 569, 785, 821
BlsI GCNGC 4 cut(s) 266, 570, 786, 822
Bme1390I CCNGG 2 cut(s) 964, 1376
Bme18I GGWCC 2 cut(s) 106, 1012
BmgT120I GGNCC 2 cut(s) 106, 1012
BmiI GGNNCC 3 cut(s) 1026, 1122, 1305
BmrFI CCNGG 2 cut(s) 964, 1376
BpiI GAAGAC 3 cut(s) 549, 1386, 1439
BplI GAGNNNNNCTC 2 cut(s) 876, 908
BpmI CTGGAG 1 cut(s) 543
Bpu14I TTCGAA 1 cut(s) 623
BpuEI CTTGAG 2 cut(s) 266, 1211
BpuMI CCSGG 1 cut(s) 964
BsaJI CCNNGG 1 cut(s) 1562
Bsc4I CCNNNNNNNGG 2 cut(s) 1021, 1333
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 526
Bse3DI GCAATG 2 cut(s) 753, 1140
BseBI CCWGG 1 cut(s) 1376
BseDI CCNNGG 1 cut(s) 1562
BseGI GGATG 1 cut(s) 1285
BseLI CCNNNNNNNGG 2 cut(s) 1021, 1333
BseMI GCAATG 2 cut(s) 753, 1140
BseMII CTCAG 2 cut(s) 15, 1116
BseNI ACTGG 1 cut(s) 526
BseRI GAGGAG 3 cut(s) 263, 743, 825
BseSI GKGCMC 1 cut(s) 197
BseXI GCAGC 3 cut(s) 251, 555, 807
BseYI CCCAGC 1 cut(s) 1423
BshFI GGCC 1 cut(s) 183
BsiHKAI GWGCWC 2 cut(s) 197, 324
BsiSI CCGG 2 cut(s) 144, 964
BslFI GGGAC 3 cut(s) 368, 998, 1155
BslI CCNNNNNNNGG 2 cut(s) 1021, 1333
BsmAI GTCTC 1 cut(s) 195
BsmFI GGGAC 3 cut(s) 368, 998, 1155
BsmI GAATGC 1 cut(s) 224
BsnI GGCC 1 cut(s) 183
Bsp119I TTCGAA 1 cut(s) 623
Bsp1286I GDGCHC 2 cut(s) 197, 324
Bsp143I GATC 2 cut(s) 580, 972
BspACI CCGC 4 cut(s) 445, 784, 1334, 1518
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 2 cut(s) 16, 1117
BspHI TCATGA 1 cut(s) 952
BspLI GGNNCC 3 cut(s) 1026, 1122, 1305
BspQI GCTCTTC 1 cut(s) 558
BspT104I TTCGAA 1 cut(s) 623
BspTI CTTAAG 1 cut(s) 968
BsrDI GCAATG 2 cut(s) 753, 1140
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 1 cut(s) 526
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 1562
BssMI GATC 2 cut(s) 580, 972
BssSI CACGAG 2 cut(s) 273, 779
Bst2BI CACGAG 2 cut(s) 273, 779
Bst2UI CCWGG 1 cut(s) 1376
Bst4CI ACNGT 4 cut(s) 192, 230, 289, 592
Bst6I CTCTTC 2 cut(s) 359, 558
BstAFI CTTAAG 1 cut(s) 968
BstBI TTCGAA 1 cut(s) 623
BstC8I GCNNGC 1 cut(s) 488
BstDEI CTNAG 4 cut(s) 24, 126, 724, 1125
BstF5I GGATG 1 cut(s) 1285
BstHHI GCGC 1 cut(s) 1363
BstKTI GATC 2 cut(s) 583, 975
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 2 cut(s) 580, 972
BstMWI GCNNNNNNNGC 2 cut(s) 1360, 1475
BstNI CCWGG 1 cut(s) 1376
BstNSI RCATGY 2 cut(s) 798, 1241
BstSCI CCNGG 2 cut(s) 962, 1374
BstSFI CTRYAG 1 cut(s) 603
BstSLI GKGCMC 1 cut(s) 197
BstV1I GCAGC 3 cut(s) 251, 555, 807
BstV2I GAAGAC 3 cut(s) 549, 1386, 1439
BsuI GTATCC 1 cut(s) 403
BsuRI GGCC 1 cut(s) 183
BtsCI GGATG 1 cut(s) 1285
BtsI GCAGTG 1 cut(s) 1077
BtsIMutI CAGTG 3 cut(s) 197, 519, 1077
Cac8I GCNNGC 1 cut(s) 488
CciI TCATGA 1 cut(s) 952
CfoI GCGC 1 cut(s) 1363
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 2 cut(s) 106, 1012
CseI GACGC 1 cut(s) 1255
Csp6I GTAC 2 cut(s) 422, 829
CviAII CATG 9 cut(s) 491, 714, 795, 838, 953, 1016, 1117, 1238, 1263
CviQI GTAC 2 cut(s) 422, 829
DdeI CTNAG 4 cut(s) 24, 126, 724, 1125
DpnI GATC 2 cut(s) 582, 974
DpnII GATC 2 cut(s) 580, 972
Eam1104I CTCTTC 2 cut(s) 359, 558
EarI CTCTTC 2 cut(s) 359, 558
Ecl136II GAGCTC 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 324
Eco47I GGWCC 2 cut(s) 106, 1012
Eco53kI GAGCTC 1 cut(s) 322
Eco57I CTGAAG 4 cut(s) 231, 239, 582, 1407
EcoICRI GAGCTC 1 cut(s) 322
EcoRI GAATTC 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 1374
EcoT38I GRGCYC 1 cut(s) 324
FaeI CATG 9 cut(s) 494, 717, 798, 841, 956, 1019, 1120, 1241, 1266
FaqI GGGAC 3 cut(s) 368, 998, 1155
FatI CATG 9 cut(s) 490, 713, 794, 837, 952, 1015, 1116, 1237, 1262
FauI CCCGC 1 cut(s) 438
FblI GTMKAC 1 cut(s) 1508
Fnu4HI GCNGC 4 cut(s) 265, 569, 785, 821
FokI GGATG 1 cut(s) 1292
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 4 cut(s) 265, 569, 785, 821
FspBI CTAG 3 cut(s) 198, 584, 671
GlaI GCGC 1 cut(s) 1362
GluI GCNGC 4 cut(s) 265, 569, 785, 821
GsaI CCCAGC 1 cut(s) 1427
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 1 cut(s) 183
HapII CCGG 2 cut(s) 144, 964
HgaI GACGC 1 cut(s) 1255
HhaI GCGC 1 cut(s) 1363
Hin1II CATG 9 cut(s) 494, 717, 798, 841, 956, 1019, 1120, 1241, 1266
Hin6I GCGC 1 cut(s) 1361
HinP1I GCGC 1 cut(s) 1361
HindIII AAGCTT 3 cut(s) 17, 629, 761
HinfI GANTC 7 cut(s) 525, 620, 645, 872, 959, 1436, 1505
HpaII CCGG 2 cut(s) 144, 964
HphI GGTGA 1 cut(s) 1551
Hpy166II GTNNAC 3 cut(s) 195, 658, 1509
Hpy188I TCNGA 7 cut(s) 211, 562, 619, 877, 1039, 1162, 1294
Hpy188III TCNNGA 8 cut(s) 23, 162, 245, 275, 705, 953, 1124, 1451
Hpy8I GTNNAC 3 cut(s) 195, 658, 1509
HpyAV CCTTC 4 cut(s) 272, 367, 917, 1270
HpyCH4III ACNGT 4 cut(s) 192, 230, 289, 592
HpyCH4IV ACGT 1 cut(s) 1338
HpyCH4V TGCA 6 cut(s) 140, 195, 758, 1133, 1354, 1478
HpyF10VI GCNNNNNNNGC 2 cut(s) 1360, 1475
HpyF3I CTNAG 4 cut(s) 24, 126, 724, 1125
HpySE526I ACGT 1 cut(s) 1338
Hsp92II CATG 9 cut(s) 494, 717, 798, 841, 956, 1019, 1120, 1241, 1266
HspAI GCGC 1 cut(s) 1361
Kzo9I GATC 2 cut(s) 580, 972
LguI GCTCTTC 1 cut(s) 558
LmnI GCTCC 3 cut(s) 250, 1126, 1498
Lsp1109I GCAGC 3 cut(s) 251, 555, 807
MaeI CTAG 3 cut(s) 198, 584, 671
MaeII ACGT 1 cut(s) 1338
MaeIII GTNAC 3 cut(s) 526, 745, 1064
MalI GATC 2 cut(s) 582, 974
MboI GATC 2 cut(s) 580, 972
MfeI CAATTG 2 cut(s) 895, 1440
MhlI GDGCHC 2 cut(s) 197, 324
MluCI AATT 8 cut(s) 85, 155, 235, 301, 455, 506, 895, 1440
MlyI GAGTC 3 cut(s) 534, 1430, 1514
MmeI TCCRAC 3 cut(s) 350, 990, 1272
MroXI GAANNNNTTC 1 cut(s) 1023
MseI TTAA 4 cut(s) 89, 512, 693, 969
MslI CAYNNNNRTG 1 cut(s) 1564
MspA1I CMGCKG 1 cut(s) 1409
MspCI CTTAAG 1 cut(s) 968
MspI CCGG 2 cut(s) 144, 964
MspR9I CCNGG 2 cut(s) 964, 1376
MunI CAATTG 2 cut(s) 895, 1440
Mva1269I GAATGC 1 cut(s) 224
MvaI CCWGG 1 cut(s) 1376
MwoI GCNNNNNNNGC 2 cut(s) 1360, 1475
NciI CCSGG 1 cut(s) 964
NdeII GATC 2 cut(s) 580, 972
NlaIII CATG 9 cut(s) 494, 717, 798, 841, 956, 1019, 1120, 1241, 1266
NlaIV GGNNCC 3 cut(s) 1026, 1122, 1305
NmuCI GTSAC 3 cut(s) 526, 745, 1064
NspI RCATGY 2 cut(s) 798, 1241
NspV TTCGAA 1 cut(s) 623
OliI CACNNNNGTG 1 cut(s) 1564
PagI TCATGA 1 cut(s) 952
PciSI GCTCTTC 1 cut(s) 558
PctI GAATGC 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 1023
PfeI GAWTC 4 cut(s) 620, 645, 872, 959
PflMI CCANNNNNTGG 1 cut(s) 1021
PfoI TCCNGGA 1 cut(s) 1374
PkrI GCNGC 4 cut(s) 266, 570, 786, 822
PleI GAGTC 3 cut(s) 533, 1430, 1513
PpsI GAGTC 3 cut(s) 533, 1430, 1513
PsiI TTATAA 1 cut(s) 1199
Psp124BI GAGCTC 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 1374
PspFI CCCAGC 1 cut(s) 1423
PspGI CCWGG 1 cut(s) 1374
PspN4I GGNNCC 3 cut(s) 1026, 1122, 1305
PspPI GGNCC 2 cut(s) 106, 1012
PvuII CAGCTG 1 cut(s) 1409
RsaI GTAC 2 cut(s) 423, 830
RsaNI GTAC 2 cut(s) 422, 829
RseI CAYNNNNRTG 1 cut(s) 1564
SacI GAGCTC 1 cut(s) 324
SapI GCTCTTC 1 cut(s) 558
SaqAI TTAA 4 cut(s) 89, 512, 693, 969
SatI GCNGC 4 cut(s) 265, 569, 785, 821
Sau3AI GATC 2 cut(s) 580, 972
Sau96I GGNCC 2 cut(s) 106, 1012
SchI GAGTC 3 cut(s) 534, 1430, 1514
ScrFI CCNGG 2 cut(s) 964, 1376
SduI GDGCHC 2 cut(s) 197, 324
SfcI CTRYAG 1 cut(s) 603
SfuI TTCGAA 1 cut(s) 623
SinI GGWCC 2 cut(s) 106, 1012
SmiMI CAYNNNNRTG 1 cut(s) 1564
SmlI CTYRAG 3 cut(s) 245, 968, 1190
SmoI CTYRAG 3 cut(s) 245, 968, 1190
Sse9I AATT 8 cut(s) 85, 155, 235, 301, 455, 506, 895, 1440
SsiI CCGC 4 cut(s) 445, 784, 1334, 1518
SspMI CTAG 3 cut(s) 198, 584, 671
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 2 cut(s) 962, 1374
TaaI ACNGT 4 cut(s) 192, 230, 289, 592
TaiI ACGT 1 cut(s) 1341
TaqI TCGA 1 cut(s) 623
TasI AATT 8 cut(s) 85, 155, 235, 301, 455, 506, 895, 1440
TatI WGTACW 1 cut(s) 421
TauI GCSGC 1 cut(s) 787
TfiI GAWTC 4 cut(s) 620, 645, 872, 959
Tru1I TTAA 4 cut(s) 89, 512, 693, 969
Tru9I TTAA 4 cut(s) 89, 512, 693, 969
TscAI CASTG 3 cut(s) 197, 526, 1084
TseFI GTSAC 3 cut(s) 526, 745, 1064
TseI GCWGC 3 cut(s) 264, 568, 820
Tsp45I GTSAC 3 cut(s) 526, 745, 1064
TspDTI ATGAA 9 cut(s) 167, 231, 406, 489, 565, 756, 826, 941, 1032
TspGWI ACGGA 1 cut(s) 1247
TspRI CASTG 3 cut(s) 197, 526, 1084
Van91I CCANNNNNTGG 1 cut(s) 1021
Vha464I CTTAAG 1 cut(s) 968
VneI GTGCAC 1 cut(s) 193
VpaK11BI GGWCC 2 cut(s) 106, 1012
XapI RAATTY 2 cut(s) 155, 235
XceI RCATGY 2 cut(s) 798, 1241
XmiI GTMKAC 1 cut(s) 1508
XmnI GAANNNNTTC 1 cut(s) 1023
XspI CTAG 3 cut(s) 198, 584, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.