Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000635

Physical Location & Seq

Genomic Coordinates Forward (+)

2655858 .. 2659260

Gene Structure 3403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG037700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTTTCGTTTTCCAGTACTGTTTTTGCTTTGTTCTGTCATCATCTCTCTCTTTTGTGATCATGCTTATGCTGATCCTCCATATAAGCTATGCTCAAACACTTCCTACTATTCAGATAATAGTACGTTTCAGACAAACCTCAACACTCTGCTCAATTCATTACCTTCCAATGCTTCTGTTTCCAAGTTGTACAATACATCCTTTGGAAATGAGCCAGATAAAGTCTTTGCTCTCTACATGTGCCTCGACTATCTCGATCCTGGTTCCTGTCATGATTGCATAAACATGGCGCAACAAGACATTGCAAACATATGTCCTTACTCCAAAGAAGCGGTTGTATGGGAGGAGAACTGTCAACTGCGCTACTCCAATCAGAATTTCTTAGGCAGGTTGAATGTAGATGACAACATCCCCTTAGATAACAAGAAGAATATTTCAGTTCCTGAAAAATTCGAGACAGTTGTGAACAAGACGCTGAGTAACCTCGCTGAGCAGGCGGCTTTTAATCATTCACTGAACATGTATGCCACTGGTGAAGTACCCTTTCAAGATAAAATGGTATATGCTCTTGTGCAGTGCACTACAGACTTATCTGGGAATGATTGTGATACATGCCTTATGAGAGCCATAGAAGATGTTTTAAGAGCGTCCTATTCCTCTCTTGGTGCGAGACTTCTCAGTCGTAGTTGTTATCTGAGGTATGAGTTTTATTCCTTCTATAATGGGGCAACGTCTGAAGCTCCTGTTGCTAATAACAAAGGAGGAGATGTCTATAGGTCAAGCCAAGTCTGCTATGTTGTGCCGCTTCCTATGCTAAGTCCAGCTCTTTCACTAGTGACTTCCTGGCGGCTTCTCTCTTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3403 Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

288

Amino Acids

32.3

Weight (kDa)

4.88

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	31 - 125	3.3e-22	Salt stress response/antifungal
Stress-antifung	PF01657	143 - 236	5.9e-14	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000635)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica	MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica	Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis	pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis	RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata	RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora	Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa	Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha	Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana	Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	678
Acc36I	ACCTGC	1 cut(s)	378
AciI	CCGC	4 cut(s)	332, 497, 803, 847
AclWI	GGATC	2 cut(s)	68, 251
AcsI	RAATTY	2 cut(s)	376, 449
AcuI	CTGAAG	1 cut(s)	756
AfaI	GTAC	4 cut(s)	18, 124, 191, 540
AflIII	ACRYGT	2 cut(s)	237, 519
AgsI	TTSAA	2 cut(s)	394, 548
AhlI	ACTAGT	1 cut(s)	832
AjnI	CCWGG	2 cut(s)	259, 842
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AluBI	AGCT	3 cut(s)	88, 740, 824
AluI	AGCT	3 cut(s)	88, 740, 824
Alw21I	GWGCWC	1 cut(s)	581
Alw26I	GTCTC	2 cut(s)	449, 664
Alw44I	GTGCAC	1 cut(s)	577
AlwI	GGATC	2 cut(s)	68, 251
AlwNI	CAGNNNCTG	1 cut(s)	443
ApaLI	GTGCAC	1 cut(s)	577
ApoI	RAATTY	2 cut(s)	376, 449
AspLEI	GCGC	2 cut(s)	292, 363
AsuHPI	GGTGA	1 cut(s)	545
BaeGI	GKGCMC	1 cut(s)	581
Bbv12I	GWGCWC	1 cut(s)	581
BciT130I	CCWGG	2 cut(s)	261, 844
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	449, 664
BcuI	ACTAGT	1 cut(s)	832
BfaI	CTAG	1 cut(s)	833
BfmI	CTRYAG	2 cut(s)	582, 772
BfuAI	ACCTGC	1 cut(s)	378
BisI	GCNGC	3 cut(s)	498, 803, 848
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	3 cut(s)	499, 804, 849
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	2 cut(s)	261, 844
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	2 cut(s)	261, 844
Bpu1102I	GCTNAGC	1 cut(s)	489
BsaXI	ACNNNNNCTCC	2 cut(s)	753, 783
Bse1I	ACTGG	2 cut(s)	14, 535
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	261, 844
BseGI	GGATG	2 cut(s)	197, 408
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	4 cut(s)	467, 480, 686, 691
BseNI	ACTGG	2 cut(s)	14, 535
BseRI	GAGGAG	2 cut(s)	359, 777
BseSI	GKGCMC	1 cut(s)	581
BsgI	GTGCAG	1 cut(s)	593
BsiHKAI	GWGCWC	1 cut(s)	581
BsmAI	GTCTC	2 cut(s)	449, 664
Bsp1286I	GDGCHC	1 cut(s)	581
Bsp1407I	TGTACA	1 cut(s)	189
Bsp143I	GATC	3 cut(s)	58, 73, 256
Bsp1720I	GCTNAGC	1 cut(s)	489
BspACI	CCGC	4 cut(s)	332, 497, 803, 847
BspCNI	CTCAG	4 cut(s)	468, 481, 687, 690
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	378
BspPI	GGATC	2 cut(s)	68, 251
BsrDI	GCAATG	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	14, 535
BssMI	GATC	3 cut(s)	58, 73, 256
Bst2UI	CCWGG	2 cut(s)	261, 844
Bst4CI	ACNGT	3 cut(s)	21, 353, 460
Bst6I	CTCTTC	1 cut(s)	862
BstAUI	TGTACA	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	7 cut(s)	382, 415, 476, 489, 677, 695, 815
BstF5I	GGATG	2 cut(s)	197, 408
BstHHI	GCGC	2 cut(s)	292, 363
BstKTI	GATC	3 cut(s)	61, 76, 259
BstMAI	GTCTC	2 cut(s)	449, 664
BstMBI	GATC	3 cut(s)	58, 73, 256
BstMWI	GCNNNNNNNGC	4 cut(s)	494, 746, 789, 811
BstNI	CCWGG	2 cut(s)	261, 844
BstNSI	RCATGY	3 cut(s)	241, 523, 615
BstSCI	CCNGG	2 cut(s)	259, 842
BstSFI	CTRYAG	2 cut(s)	582, 772
BstSLI	GKGCMC	1 cut(s)	581
BtsCI	GGATG	2 cut(s)	197, 408
BtsI	GCAGTG	1 cut(s)	581
BtsIMutI	CAGTG	3 cut(s)	512, 528, 581
BveI	ACCTGC	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	495
CaiI	CAGNNNCTG	1 cut(s)	443
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	2 cut(s)	292, 363
CseI	GACGC	2 cut(s)	481, 636
Csp6I	GTAC	4 cut(s)	17, 123, 190, 539
CviAII	CATG	6 cut(s)	62, 238, 272, 286, 520, 612
CviJI	RGCY	8 cut(s)	88, 214, 500, 626, 740, 783, 824, 850
CviKI_1	RGCY	8 cut(s)	88, 214, 500, 626, 740, 783, 824, 850
CviQI	GTAC	4 cut(s)	17, 123, 190, 539
DdeI	CTNAG	7 cut(s)	382, 415, 476, 489, 677, 695, 815
DpnI	GATC	3 cut(s)	60, 75, 258
DpnII	GATC	3 cut(s)	58, 73, 256
DrdI	GACNNNNNNGTC	1 cut(s)	678
DseDI	GACNNNNNNGTC	1 cut(s)	678
Eam1104I	CTCTTC	1 cut(s)	862
EarI	CTCTTC	1 cut(s)	862
Eco57I	CTGAAG	1 cut(s)	756
EcoRII	CCWGG	2 cut(s)	259, 842
FaeI	CATG	6 cut(s)	65, 241, 275, 289, 523, 615
FatI	CATG	6 cut(s)	61, 237, 271, 285, 519, 611
FauNDI	CATATG	1 cut(s)	311
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	3 cut(s)	498, 803, 848
FokI	GGATG	2 cut(s)	184, 395
Fsp4HI	GCNGC	3 cut(s)	498, 803, 848
FspBI	CTAG	1 cut(s)	833
GlaI	GCGC	2 cut(s)	291, 362
GluI	GCNGC	3 cut(s)	498, 803, 848
HgaI	GACGC	2 cut(s)	481, 636
HhaI	GCGC	2 cut(s)	292, 363
Hin1II	CATG	6 cut(s)	65, 241, 275, 289, 523, 615
Hin6I	GCGC	2 cut(s)	290, 361
HinP1I	GCGC	2 cut(s)	290, 361
HincII	GTYRAC	1 cut(s)	356
HindII	GTYRAC	1 cut(s)	356
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	3 cut(s)	356, 466, 579
Hpy188I	TCNGA	5 cut(s)	115, 132, 375, 696, 736
Hpy188III	TCNNGA	5 cut(s)	254, 272, 443, 454, 548
Hpy8I	GTNNAC	3 cut(s)	356, 466, 579
HpyAV	CCTTC	2 cut(s)	174, 724
HpyCH4III	ACNGT	3 cut(s)	21, 353, 460
HpyCH4IV	ACGT	2 cut(s)	125, 731
HpyCH4V	TGCA	4 cut(s)	279, 305, 574, 579
HpyF10VI	GCNNNNNNNGC	4 cut(s)	494, 746, 789, 811
HpyF3I	CTNAG	7 cut(s)	382, 415, 476, 489, 677, 695, 815
HpySE526I	ACGT	2 cut(s)	125, 731
Hsp92II	CATG	6 cut(s)	65, 241, 275, 289, 523, 615
HspAI	GCGC	2 cut(s)	290, 361
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	58, 73, 256
LmnI	GCTCC	1 cut(s)	745
MaeI	CTAG	1 cut(s)	833
MaeII	ACGT	2 cut(s)	125, 731
MaeIII	GTNAC	2 cut(s)	479, 835
MalI	GATC	3 cut(s)	60, 75, 258
MboI	GATC	3 cut(s)	58, 73, 256
MboII	GAAGA	3 cut(s)	439, 644, 849
MhlI	GDGCHC	1 cut(s)	581
MluCI	AATT	3 cut(s)	154, 376, 449
MnlI	CCTC	8 cut(s)	87, 149, 254, 337, 494, 667, 690, 755
MseI	TTAA	2 cut(s)	504, 641
MslI	CAYNNNNRTG	2 cut(s)	66, 284
MspR9I	CCNGG	2 cut(s)	261, 844
MvaI	CCWGG	2 cut(s)	261, 844
MwoI	GCNNNNNNNGC	4 cut(s)	494, 746, 789, 811
NdeI	CATATG	1 cut(s)	311
NdeII	GATC	3 cut(s)	58, 73, 256
NlaIII	CATG	6 cut(s)	65, 241, 275, 289, 523, 615
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	835
NspI	RCATGY	3 cut(s)	241, 523, 615
PagI	TCATGA	1 cut(s)	271
PciI	ACATGT	2 cut(s)	237, 519
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PkrI	GCNGC	3 cut(s)	499, 804, 849
PscI	ACATGT	2 cut(s)	237, 519
Psp6I	CCWGG	2 cut(s)	259, 842
PspGI	CCWGG	2 cut(s)	259, 842
PspN4I	GGNNCC	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	443
RsaI	GTAC	4 cut(s)	18, 124, 191, 540
RsaNI	GTAC	4 cut(s)	17, 123, 190, 539
RseI	CAYNNNNRTG	2 cut(s)	66, 284
SaqAI	TTAA	2 cut(s)	504, 641
SatI	GCNGC	3 cut(s)	498, 803, 848
Sau3AI	GATC	3 cut(s)	58, 73, 256
ScaI	AGTACT	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	261, 844
SduI	GDGCHC	1 cut(s)	581
SfcI	CTRYAG	2 cut(s)	582, 772
SmiMI	CAYNNNNRTG	2 cut(s)	66, 284
SpeI	ACTAGT	1 cut(s)	832
Sse9I	AATT	3 cut(s)	154, 376, 449
SsiI	CCGC	4 cut(s)	332, 497, 803, 847
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	1 cut(s)	833
StyD4I	CCNGG	2 cut(s)	259, 842
TaaI	ACNGT	3 cut(s)	21, 353, 460
TaiI	ACGT	2 cut(s)	128, 734
TaqI	TCGA	3 cut(s)	246, 255, 453
TasI	AATT	3 cut(s)	154, 376, 449
TatI	WGTACW	2 cut(s)	16, 189
TauI	GCSGC	3 cut(s)	500, 805, 850
Tru1I	TTAA	2 cut(s)	504, 641
Tru9I	TTAA	2 cut(s)	504, 641
TscAI	CASTG	3 cut(s)	519, 535, 581
TseFI	GTSAC	1 cut(s)	835
Tsp45I	GTSAC	1 cut(s)	835
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	3 cut(s)	519, 535, 581
VneI	GTGCAC	1 cut(s)	577
XapI	RAATTY	2 cut(s)	376, 449
XceI	RCATGY	3 cut(s)	241, 523, 615
XspI	CTAG	1 cut(s)	833
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.