pycom10g26540

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
27862132 .. 27863241
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g26540.2

Sequence Viewer

Length: 807 bp
ATGAAACTTCAACATAAAAATCTTGTTCGGCTTTTGGGTTTTTGTGTTGAGGGAGAGGAAAAACTGCTTGTCTATGAATACCTGCCAAACAGCAGCCTAAATGTCTTCCTCTTTGATTCAGAGAAACGAGCACAACTTGATTGGAGCAGACGTGTAAACATTGTAAGTGGAATTGCAAGGGGAATTCTTTATTTACACGAGGACTCTCGACTTCAAATCATCCATAGAGACTTGAAAGCTAGCAATGTTTTATTGGACAGTGACATGAACCCTAAGATCTCCGACTTTGGCATGGCAAGGATCTTTGCAGGAAGTGAAGGCCAAGCAAATACGACTACAATAGTTGGGACTTACGGATATATGGCTCCAGAATATGCAATGGAGGGAGTATATTCCGTCAAGTCTGATGTTTATGGTTTTGGAGTACTATTGCTTGAGATCATAACTGGGAGAAGGAACGCCAGCTTTCATCCAATAAAACGTGTTCCTAGCCTTGTAACATATGCATGGAAATTATGGCATGACGGAAAAGGGTTGGAGCTACTCGACCCACTGCTGCTCGATTCATGTGATCCAAATGAGTTTCTAAGATATCTCCATATTGGATTGTTGTGTGTCCAGGAAGACGCGTATGACAGGCCAACCATGTCTTCTGCTGTTGTAATGTTGAAAAGTGAAACTGTAACTCTTAGCCAACCCGAGAAACCTGCTTTCACCACGGGAAGATTCACTGATCATTATACTGAGACAGCTGCTGGTAATAGTTCTATTAATGGCCTAACAGTTTCTAACGTCATGCCGCGATAA

Protein Analysis

269

Amino Acids

30.09

Weight (kDa)

5.99

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 90, 715
AccII CGCG 2 cut(s) 629, 802
AciI CCGC 1 cut(s) 800
AclWI GGATC 2 cut(s) 308, 566
AcsI RAATTY 1 cut(s) 183
AfaI GTAC 1 cut(s) 426
AflIII ACRYGT 3 cut(s) 151, 481, 627
AgsI TTSAA 4 cut(s) 11, 215, 235, 670
AjiI CACGTC 1 cut(s) 152
AjnI CCWGG 1 cut(s) 618
AjuI GAANNNNNNNTTGG 2 cut(s) 634, 666
AluBI AGCT 4 cut(s) 239, 465, 541, 752
AluI AGCT 4 cut(s) 239, 465, 541, 752
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 2 cut(s) 222, 740
AlwI GGATC 2 cut(s) 308, 566
AlwNI CAGNNNCTG 1 cut(s) 755
Ama87I CYCGRG 1 cut(s) 698
AoxI GGCC 3 cut(s) 319, 638, 775
ApeKI GCWGC 3 cut(s) 93, 556, 752
ApoI RAATTY 1 cut(s) 183
AseI ATTAAT 1 cut(s) 771
AsuHPI GGTGA 1 cut(s) 706
AsuNHI GCTAGC 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 698
BauI CACGAG 1 cut(s) 197
BbsI GAAGAC 3 cut(s) 97, 630, 642
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 3 cut(s) 105, 543, 739
BcgI CGANNNNNNTGC 2 cut(s) 689, 723
BciT130I CCWGG 1 cut(s) 620
BclI TGATCA 1 cut(s) 733
BcoDI GTCTC 2 cut(s) 222, 740
BfaI CTAG 2 cut(s) 240, 489
BfuAI ACCTGC 2 cut(s) 90, 715
BglII AGATCT 1 cut(s) 276
BisI GCNGC 4 cut(s) 94, 557, 753, 800
BlsI GCNGC 4 cut(s) 95, 558, 754, 801
BmcAI AGTACT 1 cut(s) 426
Bme1390I CCNGG 1 cut(s) 620
BmeT110I CYCGRG 1 cut(s) 698
BmgBI CACGTC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 1 cut(s) 620
BmrI ACTGGG 1 cut(s) 456
BmtI GCTAGC 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 456
BpiI GAAGAC 3 cut(s) 97, 630, 642
BpmI CTGGAG 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 455
BsaJI CCNNGG 1 cut(s) 717
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bse1I ACTGG 1 cut(s) 451
Bse3DI GCAATG 2 cut(s) 250, 384
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 1 cut(s) 717
BseGI GGATG 2 cut(s) 219, 469
BseMI GCAATG 2 cut(s) 250, 384
BseMII CTCAG 1 cut(s) 735
BseNI ACTGG 1 cut(s) 451
BseXI GCAGC 3 cut(s) 105, 543, 739
Bsh1236I CGCG 2 cut(s) 629, 802
BshFI GGCC 3 cut(s) 321, 640, 777
BsiHKAI GWGCWC 1 cut(s) 133
BsiHKCI CYCGRG 1 cut(s) 698
BslFI GGGAC 1 cut(s) 361
BsmAI GTCTC 2 cut(s) 222, 740
BsmFI GGGAC 1 cut(s) 361
BsnI GGCC 3 cut(s) 321, 640, 777
BsoBI CYCGRG 1 cut(s) 698
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 5 cut(s) 276, 300, 438, 571, 733
BspACI CCGC 1 cut(s) 800
BspANI GGCC 3 cut(s) 321, 640, 777
BspCNI CTCAG 1 cut(s) 736
BspFNI CGCG 2 cut(s) 629, 802
BspLI GGNNCC 1 cut(s) 366
BspMI ACCTGC 2 cut(s) 90, 715
BspOI GCTAGC 1 cut(s) 243
BspPI GGATC 2 cut(s) 308, 566
BsrDI GCAATG 2 cut(s) 250, 384
BsrI ACTGG 1 cut(s) 451
BssECI CCNNGG 1 cut(s) 717
BssMI GATC 5 cut(s) 276, 300, 438, 571, 733
BssSI CACGAG 1 cut(s) 197
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 3 cut(s) 260, 682, 784
BstC8I GCNNGC 2 cut(s) 241, 463
BstDEI CTNAG 4 cut(s) 273, 587, 689, 744
BstDSI CCRYGG 1 cut(s) 717
BstF5I GGATG 2 cut(s) 219, 469
BstFNI CGCG 2 cut(s) 629, 802
BstKTI GATC 5 cut(s) 279, 303, 441, 574, 736
BstMAI GTCTC 2 cut(s) 222, 740
BstMBI GATC 5 cut(s) 276, 300, 438, 571, 733
BstNI CCWGG 1 cut(s) 620
BstSCI CCNGG 1 cut(s) 618
BstUI CGCG 2 cut(s) 629, 802
BstV1I GCAGC 3 cut(s) 105, 543, 739
BstV2I GAAGAC 3 cut(s) 97, 630, 642
BstX2I RGATCY 2 cut(s) 276, 300
BstYI RGATCY 2 cut(s) 276, 300
BsuRI GGCC 3 cut(s) 321, 640, 777
BtgI CCRYGG 1 cut(s) 717
BtrI CACGTC 1 cut(s) 152
BtsCI GGATG 2 cut(s) 219, 469
BtsI GCAGTG 1 cut(s) 551
BtsIMutI CAGTG 3 cut(s) 265, 551, 729
BveI ACCTGC 2 cut(s) 90, 715
Cac8I GCNNGC 2 cut(s) 241, 463
CaiI CAGNNNCTG 1 cut(s) 755
CseI GACGC 1 cut(s) 635
Csp6I GTAC 1 cut(s) 425
CviAII CATG 7 cut(s) 265, 292, 507, 521, 567, 646, 796
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 4 cut(s) 273, 587, 689, 744
DpnI GATC 5 cut(s) 278, 302, 440, 573, 735
DpnII GATC 5 cut(s) 276, 300, 438, 571, 733
Eco32I GATATC 1 cut(s) 593
Eco88I CYCGRG 1 cut(s) 698
EcoRI GAATTC 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 618
EcoRV GATATC 1 cut(s) 593
EcoT22I ATGCAT 1 cut(s) 508
FaeI CATG 7 cut(s) 268, 295, 510, 524, 570, 649, 799
FaqI GGGAC 1 cut(s) 361
FatI CATG 7 cut(s) 264, 291, 506, 520, 566, 645, 795
FauNDI CATATG 1 cut(s) 502
FbaI TGATCA 1 cut(s) 733
Fnu4HI GCNGC 4 cut(s) 94, 557, 753, 800
FokI GGATG 2 cut(s) 206, 456
Fsp4HI GCNGC 4 cut(s) 94, 557, 753, 800
FspBI CTAG 2 cut(s) 240, 489
GluI GCNGC 4 cut(s) 94, 557, 753, 800
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 3 cut(s) 321, 640, 777
HgaI GACGC 1 cut(s) 635
Hin1II CATG 7 cut(s) 268, 295, 510, 524, 570, 649, 799
HinfI GANTC 4 cut(s) 116, 203, 563, 726
HphI GGTGA 1 cut(s) 706
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 3 cut(s) 121, 283, 406
Hpy188III TCNNGA 2 cut(s) 207, 368
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 311, 447
HpyCH4III ACNGT 3 cut(s) 260, 682, 784
HpyCH4IV ACGT 3 cut(s) 151, 481, 792
HpyCH4V TGCA 4 cut(s) 176, 308, 377, 506
HpyF3I CTNAG 4 cut(s) 273, 587, 689, 744
HpySE526I ACGT 3 cut(s) 151, 481, 792
Hsp92II CATG 7 cut(s) 268, 295, 510, 524, 570, 649, 799
Ksp22I TGATCA 1 cut(s) 733
Kzo9I GATC 5 cut(s) 276, 300, 438, 571, 733
LmnI GCTCC 3 cut(s) 144, 370, 538
Lsp1109I GCAGC 3 cut(s) 105, 543, 739
MaeI CTAG 2 cut(s) 240, 489
MaeII ACGT 3 cut(s) 151, 481, 792
MaeIII GTNAC 3 cut(s) 260, 496, 682
MalI GATC 5 cut(s) 278, 302, 440, 573, 735
MboI GATC 5 cut(s) 276, 300, 438, 571, 733
MboII GAAGA 4 cut(s) 97, 635, 642, 735
MflI RGATCY 2 cut(s) 276, 300
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 3 cut(s) 171, 183, 512
MluI ACGCGT 1 cut(s) 627
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 2 cut(s) 306, 516
MnlI CCTC 5 cut(s) 43, 49, 119, 193, 376
Mph1103I ATGCAT 1 cut(s) 508
MseI TTAA 1 cut(s) 771
MslI CAYNNNNRTG 1 cut(s) 505
MspA1I CMGCKG 1 cut(s) 752
MspR9I CCNGG 1 cut(s) 620
MvaI CCWGG 1 cut(s) 620
MvnI CGCG 2 cut(s) 629, 802
NdeI CATATG 1 cut(s) 502
NdeII GATC 5 cut(s) 276, 300, 438, 571, 733
NheI GCTAGC 1 cut(s) 239
NlaIII CATG 7 cut(s) 268, 295, 510, 524, 570, 649, 799
NlaIV GGNNCC 1 cut(s) 366
NmuCI GTSAC 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 508
PfeI GAWTC 3 cut(s) 116, 563, 726
PfoI TCCNGGA 1 cut(s) 618
PkrI GCNGC 4 cut(s) 95, 558, 754, 801
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PshBI ATTAAT 1 cut(s) 771
Psp6I CCWGG 1 cut(s) 618
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 1 cut(s) 366
PstNI CAGNNNCTG 1 cut(s) 755
PsuI RGATCY 2 cut(s) 276, 300
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
RseI CAYNNNNRTG 1 cut(s) 505
SaqAI TTAA 1 cut(s) 771
SatI GCNGC 4 cut(s) 94, 557, 753, 800
Sau3AI GATC 5 cut(s) 276, 300, 438, 571, 733
ScaI AGTACT 1 cut(s) 426
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 620
SduI GDGCHC 1 cut(s) 133
SetI ASST 9 cut(s) 84, 154, 241, 467, 484, 543, 709, 754, 795
SmiMI CAYNNNNRTG 1 cut(s) 505
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 3 cut(s) 171, 183, 512
SsiI CCGC 1 cut(s) 800
SspMI CTAG 2 cut(s) 240, 489
StyD4I CCNGG 1 cut(s) 618
TaaI ACNGT 3 cut(s) 260, 682, 784
TaiI ACGT 3 cut(s) 154, 484, 795
TaqI TCGA 3 cut(s) 208, 546, 561
TasI AATT 3 cut(s) 171, 183, 512
TatI WGTACW 1 cut(s) 424
TauI GCSGC 1 cut(s) 802
TfiI GAWTC 3 cut(s) 116, 563, 726
Tru1I TTAA 1 cut(s) 771
Tru9I TTAA 1 cut(s) 771
TscAI CASTG 3 cut(s) 265, 558, 736
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 3 cut(s) 93, 556, 752
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 5 cut(s) 17, 90, 281, 458, 555
TspGWI ACGGA 3 cut(s) 369, 385, 540
TspRI CASTG 3 cut(s) 265, 558, 736
VspI ATTAAT 1 cut(s) 771
XapI RAATTY 1 cut(s) 183
XspI CTAG 2 cut(s) 240, 489
ZrmI AGTACT 1 cut(s) 426
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.