Rroxscaffold_1G00071880

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
93028097 .. 93031145
3049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00071880.1

Sequence Viewer

Length: 1581 bp
ATGGATACGCTTTCAGTTATGCTTTTCATGATTCTACCACTTTTGTTACCAGCTACCGTTTCTGGTGCAGATCCACTTTCCACTTTTTGCTCAGATGATGGCATCATCTACACTCCTGGCAGCCAATTTGAAAGTAATCTCAAGCAGCTCCTTGAGTCATTGTCATTCAACACTTCAATCTTCGGTGGTTTCTACAACGACACAATTGGCACTAGCCGTGACAGAATCTTTGGACAAACACTTTGTAGAGGGGATGTGAGCTCCACAGCTTGTCAGAAATGTGTGAGTGATGCAAGCCAGGAAATCTTCAACAGTTGTAAATCTAGAGATGCATTGATCTGGTATGAACTATGTCAAGTTCGCTATTCCTACCAGATGTTCTTTTCATCGATGTCTTATACTGGGAAGTACCCGGACCAGAATAATCAGCAGAAGAATGTATCAGATGCACATTATTTTGGTGATGTTTTGAGGTATTTAATGAATAACCTCTCTGGAGAGTCTCTGTTTACTCCTCCAAAGAAAATGTTTGCAACTGGTGAAATTGAGCTTTCGGGAAATAGAATTATTTATGGTCTGGAACAGTGCACCAGAGACATCTCTGAAAGAGACTGCAATAACTGTCTGGTTTTTGCTTTAGAGGATCTTTCATCATGCTGCTCCTCTCATCAAGGTGGAACTGTAGTCAGTAGAAATTGTAATGTGAGGTTTGAGCTCGACCGGTTTTTTAATGACACTTCAAGCAGTCGGTTAATTTATCCATATTCAAAAGCAGGGGATGACAGGAAGACTTGGAAGGTGGTGGTTACATGTGCATCCGCTATACTATTGGCAGTTCTAGTTGTACTTTGTGCAGTTCATTTTCAACGGCAAAAGAGATTGAAAAATGTCAACGATGAAGAGAGAAGCGAGCATGTACTATTACATGATCTGGCAAGTCCCACTGAAGTAACAATTACAGAAGAAGGCGTATTGGTGACTTCTGAGGAACTGCCATTCGTTGATGTAGCAACTATAAAGATAGCTACAGATGACTTTTCAGATTCCAACAAGCTTGGACAAGGTGGGTTTGGTACTGTTTACAAGGGTGTGCTACCAGATGGGAGAGAAGTAGCTGTTAAAAGATTGTCAAGGAAGTCATGGCAAGGCTTAGAGGAGTTTAAAAACGAAGTCATACTCATCGCAAAGCTTCAACACAGAAACCTAGTGCGGCTCTTGGCATGTGGCTTTGAAGGAGAGGAGAAGCTGCTTTTGTATGAGTACATGCCAAATAAAAGCCTTGATACTTTCATCTTTGATTCGCAAAAGCGTGCTGAACTTTGTTGGGAAACATATCACAACATCATTAAAGGAATCGCCAGAGGACTTCTGTATCTTCATGAAGACTCCCGGCTCAGAATCATTCACAGAGATTTAAAGCCCAGCAATGTACTTTTGGACCATGAAATGGTGGCCAAAATTTCAGATTTTGGCATGGCAAGGATATTTTGTGAAAATCAGAACACAGCTAATACTAAAAGAGTTGTAGGAACATATGGCTACATGGCTCCAGGTATGCAATGGAGGGTTTATTTTCTGTAA

Protein Analysis

526

Amino Acids

59.51

Weight (kDa)

5.79

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 30 - 123 5.9e-21 Salt stress response/antifungal
Stress-antifung PF01657 142 - 238 1.5e-12 Salt stress response/antifungal
Pkinase PF00069 347 - 517 2.5e-36 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 349 - 517 2.4e-32 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1447
AciI CCGC 2 cut(s) 819, 1210
AclWI GGATC 2 cut(s) 65, 651
AcoI YGGCCR 1 cut(s) 1452
AcsI RAATTY 1 cut(s) 1458
AcuI CTGAAG 1 cut(s) 966
AfaI GTAC 6 cut(s) 410, 846, 918, 1075, 1262, 1431
AfiI CCNNNNNNNGG 1 cut(s) 1447
AflIII ACRYGT 1 cut(s) 809
AgeI ACCGGT 1 cut(s) 720
AjnI CCWGG 3 cut(s) 115, 297, 1549
Alw21I GWGCWC 3 cut(s) 263, 590, 717
Alw26I GTCTC 3 cut(s) 507, 588, 603
Alw44I GTGCAC 1 cut(s) 586
AlwI GGATC 2 cut(s) 65, 651
AoxI GGCC 1 cut(s) 1452
ApaLI GTGCAC 1 cut(s) 586
ApeKI GCWGC 4 cut(s) 120, 145, 657, 1246
ApoI RAATTY 1 cut(s) 1458
ArsI GACNNNNNNTTYG 4 cut(s) 212, 225, 244, 257
AsiGI ACCGGT 1 cut(s) 720
AspS9I GGNCC 2 cut(s) 415, 1438
AsuC2I CCSGG 2 cut(s) 413, 1390
AsuHPI GGTGA 3 cut(s) 473, 551, 988
AvaII GGWCC 2 cut(s) 415, 1438
BaeGI GKGCMC 1 cut(s) 590
BaeI ACNNNNGTAYC 2 cut(s) 1355, 1388
BalI TGGCCA 1 cut(s) 1454
BanII GRGCYC 2 cut(s) 263, 717
BbsI GAAGAC 2 cut(s) 794, 1389
Bbv12I GWGCWC 3 cut(s) 263, 590, 717
BbvI GCAGC 4 cut(s) 132, 157, 644, 1233
BccI CCATC 2 cut(s) 92, 1094
BceAI ACGGC 2 cut(s) 201, 884
BciT130I CCWGG 3 cut(s) 117, 299, 1551
BcnI CCSGG 2 cut(s) 413, 1390
BcoDI GTCTC 3 cut(s) 507, 588, 603
BfaI CTAG 4 cut(s) 213, 324, 839, 1205
BfmI CTRYAG 2 cut(s) 681, 1026
BisI GCNGC 5 cut(s) 121, 146, 658, 1211, 1247
BlsI GCNGC 5 cut(s) 122, 147, 659, 1212, 1248
Bme1390I CCNGG 5 cut(s) 117, 299, 413, 1390, 1551
Bme18I GGWCC 2 cut(s) 415, 1438
BmgT120I GGNCC 2 cut(s) 415, 1438
BmiI GGNNCC 1 cut(s) 1548
BmrFI CCNGG 5 cut(s) 117, 299, 413, 1390, 1551
BmrI ACTGGG 1 cut(s) 411
BmsI GCATC 5 cut(s) 111, 280, 319, 436, 824
BmuI ACTGGG 1 cut(s) 411
BpiI GAAGAC 2 cut(s) 794, 1389
BpmI CTGGAG 2 cut(s) 516, 1533
BpuEI CTTGAG 2 cut(s) 125, 173
BpuMI CCSGG 2 cut(s) 413, 1390
Bsa29I ATCGAT 1 cut(s) 389
BsaWI WCCGGW 1 cut(s) 720
Bsc4I CCNNNNNNNGG 1 cut(s) 1447
Bse118I RCCGGY 1 cut(s) 720
Bse1I ACTGG 2 cut(s) 406, 541
Bse3DI GCAATG 2 cut(s) 1432, 1565
BseBI CCWGG 3 cut(s) 117, 299, 1551
BseCI ATCGAT 1 cut(s) 389
BseGI GGATG 3 cut(s) 259, 784, 815
BseLI CCNNNNNNNGG 1 cut(s) 1447
BseMI GCAATG 2 cut(s) 1432, 1565
BseMII CTCAG 3 cut(s) 105, 975, 1408
BseNI ACTGG 2 cut(s) 406, 541
BseRI GAGGAG 4 cut(s) 504, 652, 1169, 1253
BseSI GKGCMC 1 cut(s) 590
BseXI GCAGC 4 cut(s) 132, 157, 644, 1233
BseYI CCCAGC 1 cut(s) 1421
BsgI GTGCAG 2 cut(s) 87, 873
Bsh1285I CGRYCG 1 cut(s) 721
BshFI GGCC 1 cut(s) 1454
BshTI ACCGGT 1 cut(s) 720
BshVI ATCGAT 1 cut(s) 389
BsiEI CGRYCG 1 cut(s) 721
BsiHKAI GWGCWC 3 cut(s) 263, 590, 717
BsiSI CCGG 3 cut(s) 413, 721, 1390
BslFI GGGAC 1 cut(s) 924
BslI CCNNNNNNNGG 1 cut(s) 1447
BsmAI GTCTC 3 cut(s) 507, 588, 603
BsmFI GGGAC 1 cut(s) 924
BsnI GGCC 1 cut(s) 1454
Bsp1286I GDGCHC 3 cut(s) 263, 590, 717
Bsp143I GATC 4 cut(s) 70, 336, 643, 928
BspACI CCGC 2 cut(s) 819, 1210
BspANI GGCC 1 cut(s) 1454
BspCNI CTCAG 3 cut(s) 104, 976, 1407
BspDI ATCGAT 1 cut(s) 389
BspHI TCATGA 2 cut(s) 27, 1378
BspLI GGNNCC 1 cut(s) 1548
BspPI GGATC 2 cut(s) 65, 651
BsrDI GCAATG 2 cut(s) 1432, 1565
BsrFI RCCGGY 1 cut(s) 720
BsrI ACTGG 2 cut(s) 406, 541
BssAI RCCGGY 1 cut(s) 720
BssMI GATC 4 cut(s) 70, 336, 643, 928
Bst2UI CCWGG 3 cut(s) 117, 299, 1551
Bst4CI ACNGT 6 cut(s) 58, 314, 585, 623, 682, 1078
Bst6I CTCTTC 1 cut(s) 894
BstC8I GCNNGC 3 cut(s) 295, 911, 1311
BstDEI CTNAG 4 cut(s) 91, 984, 1150, 1394
BstF5I GGATG 3 cut(s) 259, 784, 815
BstKTI GATC 4 cut(s) 73, 339, 646, 931
BstMAI GTCTC 3 cut(s) 507, 588, 603
BstMBI GATC 4 cut(s) 70, 336, 643, 928
BstMCI CGRYCG 1 cut(s) 721
BstNI CCWGG 3 cut(s) 117, 299, 1551
BstNSI RCATGY 4 cut(s) 813, 917, 1224, 1267
BstSCI CCNGG 5 cut(s) 115, 297, 411, 1388, 1549
BstSFI CTRYAG 2 cut(s) 681, 1026
BstSLI GKGCMC 1 cut(s) 590
BstV1I GCAGC 4 cut(s) 132, 157, 644, 1233
BstV2I GAAGAC 2 cut(s) 794, 1389
BstX2I RGATCY 2 cut(s) 70, 643
BstYI RGATCY 2 cut(s) 70, 643
Bsu15I ATCGAT 1 cut(s) 389
BsuRI GGCC 1 cut(s) 1454
BsuTUI ATCGAT 1 cut(s) 389
BtgZI GCGATG 1 cut(s) 1165
BtsCI GGATG 3 cut(s) 259, 784, 815
BtsIMutI CAGTG 2 cut(s) 590, 942
Cac8I GCNNGC 3 cut(s) 295, 911, 1311
CciI TCATGA 2 cut(s) 27, 1378
Cfr10I RCCGGY 1 cut(s) 720
Cfr13I GGNCC 2 cut(s) 415, 1438
ClaI ATCGAT 1 cut(s) 389
Csp6I GTAC 6 cut(s) 409, 845, 917, 1074, 1261, 1430
CspAI ACCGGT 1 cut(s) 720
CviQI GTAC 6 cut(s) 409, 845, 917, 1074, 1261, 1430
DdeI CTNAG 4 cut(s) 91, 984, 1150, 1394
DpnI GATC 4 cut(s) 72, 338, 645, 930
DpnII GATC 4 cut(s) 70, 336, 643, 928
DraI TTTAAA 2 cut(s) 1162, 1416
EaeI YGGCCR 1 cut(s) 1452
Eam1104I CTCTTC 1 cut(s) 894
EarI CTCTTC 1 cut(s) 894
Ecl136II GAGCTC 2 cut(s) 261, 715
Eco24I GRGCYC 2 cut(s) 263, 717
Eco47I GGWCC 2 cut(s) 415, 1438
Eco53kI GAGCTC 2 cut(s) 261, 715
Eco57I CTGAAG 1 cut(s) 966
EcoICRI GAGCTC 2 cut(s) 261, 715
EcoRII CCWGG 3 cut(s) 115, 297, 1549
EcoT22I ATGCAT 1 cut(s) 334
EcoT38I GRGCYC 2 cut(s) 263, 717
FaqI GGGAC 1 cut(s) 924
FauNDI CATATG 1 cut(s) 1534
Fnu4HI GCNGC 5 cut(s) 121, 146, 658, 1211, 1247
FokI GGATG 3 cut(s) 266, 791, 802
FriOI GRGCYC 2 cut(s) 263, 717
Fsp4HI GCNGC 5 cut(s) 121, 146, 658, 1211, 1247
FspBI CTAG 4 cut(s) 213, 324, 839, 1205
GluI GCNGC 5 cut(s) 121, 146, 658, 1211, 1247
GsaI CCCAGC 1 cut(s) 1425
GsuI CTGGAG 2 cut(s) 516, 1533
HaeIII GGCC 1 cut(s) 1454
HapII CCGG 3 cut(s) 413, 721, 1390
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HindIII AAGCTT 2 cut(s) 1052, 1187
HinfI GANTC 9 cut(s) 31, 155, 225, 500, 1043, 1298, 1353, 1385, 1398
HpaII CCGG 3 cut(s) 413, 721, 1390
HphI GGTGA 3 cut(s) 473, 551, 988
Hpy166II GTNNAC 4 cut(s) 510, 588, 892, 1081
Hpy188I TCNGA 9 cut(s) 94, 276, 445, 604, 985, 1042, 1397, 1465, 1500
Hpy188III TCNNGA 6 cut(s) 28, 324, 495, 555, 578, 1379
Hpy8I GTNNAC 4 cut(s) 510, 588, 892, 1081
HpyAV CCTTC 3 cut(s) 790, 959, 1226
HpyCH4III ACNGT 6 cut(s) 58, 314, 585, 623, 682, 1078
HpyF3I CTNAG 4 cut(s) 91, 984, 1150, 1394
Kzo9I GATC 4 cut(s) 70, 336, 643, 928
LmnI GCTCC 4 cut(s) 153, 266, 665, 1552
Lsp1109I GCAGC 4 cut(s) 132, 157, 644, 1233
LweI GCATC 5 cut(s) 111, 280, 319, 436, 824
MaeI CTAG 4 cut(s) 213, 324, 839, 1205
MaeIII GTNAC 5 cut(s) 45, 218, 805, 949, 976
MalI GATC 4 cut(s) 72, 338, 645, 930
MboI GATC 4 cut(s) 70, 336, 643, 928
MboII GAAGA 8 cut(s) 172, 298, 445, 799, 911, 974, 1367, 1394
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 2 cut(s) 70, 643
MhlI GDGCHC 3 cut(s) 263, 590, 717
MlsI TGGCCA 1 cut(s) 1454
MluCI AATT 8 cut(s) 125, 204, 543, 564, 694, 753, 954, 1458
MluNI TGGCCA 1 cut(s) 1454
MlyI GAGTC 3 cut(s) 164, 509, 1379
MmeI TCCRAC 1 cut(s) 1071
Mox20I TGGCCA 1 cut(s) 1454
Mph1103I ATGCAT 1 cut(s) 334
MscI TGGCCA 1 cut(s) 1454
MseI TTAA 7 cut(s) 479, 729, 752, 1119, 1161, 1347, 1415
MslI CAYNNNNRTG 1 cut(s) 672
Msp20I TGGCCA 1 cut(s) 1454
MspI CCGG 3 cut(s) 413, 721, 1390
MspR9I CCNGG 5 cut(s) 117, 299, 413, 1390, 1551
MunI CAATTG 1 cut(s) 204
MvaI CCWGG 3 cut(s) 117, 299, 1551
NciI CCSGG 2 cut(s) 413, 1390
NdeI CATATG 1 cut(s) 1534
NdeII GATC 4 cut(s) 70, 336, 643, 928
NlaIV GGNNCC 1 cut(s) 1548
NmuCI GTSAC 2 cut(s) 218, 976
NsiI ATGCAT 1 cut(s) 334
NspI RCATGY 4 cut(s) 813, 917, 1224, 1267
PagI TCATGA 2 cut(s) 27, 1378
PciI ACATGT 1 cut(s) 809
PfeI GAWTC 6 cut(s) 31, 225, 1043, 1298, 1353, 1398
PflMI CCANNNNNTGG 1 cut(s) 1447
PinAI ACCGGT 1 cut(s) 720
PkrI GCNGC 5 cut(s) 122, 147, 659, 1212, 1248
PleI GAGTC 3 cut(s) 163, 508, 1379
PpsI GAGTC 3 cut(s) 163, 508, 1379
PscI ACATGT 1 cut(s) 809
Psp124BI GAGCTC 2 cut(s) 263, 717
Psp6I CCWGG 3 cut(s) 115, 297, 1549
PspFI CCCAGC 1 cut(s) 1421
PspGI CCWGG 3 cut(s) 115, 297, 1549
PspN4I GGNNCC 1 cut(s) 1548
PspPI GGNCC 2 cut(s) 415, 1438
PsuI RGATCY 2 cut(s) 70, 643
RsaI GTAC 6 cut(s) 410, 846, 918, 1075, 1262, 1431
RsaNI GTAC 6 cut(s) 409, 845, 917, 1074, 1261, 1430
RseI CAYNNNNRTG 1 cut(s) 672
SacI GAGCTC 2 cut(s) 263, 717
SaqAI TTAA 7 cut(s) 479, 729, 752, 1119, 1161, 1347, 1415
SatI GCNGC 5 cut(s) 121, 146, 658, 1211, 1247
Sau3AI GATC 4 cut(s) 70, 336, 643, 928
Sau96I GGNCC 2 cut(s) 415, 1438
SchI GAGTC 3 cut(s) 164, 509, 1379
ScrFI CCNGG 5 cut(s) 117, 299, 413, 1390, 1551
SduI GDGCHC 3 cut(s) 263, 590, 717
SfaNI GCATC 5 cut(s) 111, 280, 319, 436, 824
SfcI CTRYAG 2 cut(s) 681, 1026
SinI GGWCC 2 cut(s) 415, 1438
SmiMI CAYNNNNRTG 1 cut(s) 672
SmlI CTYRAG 2 cut(s) 140, 152
SmoI CTYRAG 2 cut(s) 140, 152
Sse9I AATT 8 cut(s) 125, 204, 543, 564, 694, 753, 954, 1458
SsiI CCGC 2 cut(s) 819, 1210
SspMI CTAG 4 cut(s) 213, 324, 839, 1205
SstI GAGCTC 2 cut(s) 263, 717
StyD4I CCNGG 5 cut(s) 115, 297, 411, 1388, 1549
TaaI ACNGT 6 cut(s) 58, 314, 585, 623, 682, 1078
TaqI TCGA 2 cut(s) 389, 717
TasI AATT 8 cut(s) 125, 204, 543, 564, 694, 753, 954, 1458
TatI WGTACW 4 cut(s) 844, 916, 1260, 1429
TauI GCSGC 1 cut(s) 1213
TfiI GAWTC 6 cut(s) 31, 225, 1043, 1298, 1353, 1398
Tru1I TTAA 7 cut(s) 479, 729, 752, 1119, 1161, 1347, 1415
Tru9I TTAA 7 cut(s) 479, 729, 752, 1119, 1161, 1347, 1415
TscAI CASTG 2 cut(s) 590, 949
TseFI GTSAC 2 cut(s) 218, 976
TseI GCWGC 4 cut(s) 120, 145, 657, 1246
Tsp45I GTSAC 2 cut(s) 218, 976
TspRI CASTG 2 cut(s) 590, 949
Van91I CCANNNNNTGG 1 cut(s) 1447
VneI GTGCAC 1 cut(s) 586
VpaK11BI GGWCC 2 cut(s) 415, 1438
XapI RAATTY 1 cut(s) 1458
XbaI TCTAGA 1 cut(s) 323
XceI RCATGY 4 cut(s) 813, 917, 1224, 1267
XcmI CCANNNNNNNNNTGG 1 cut(s) 1557
XspI CTAG 4 cut(s) 213, 324, 839, 1205
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.