MD10G1313500.v1.1

Salt stress response/antifungal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000635
Physical Location & Seq
Reverse (-)
39797613 .. 39798537
925 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1313500.v1.1.491

Sequence Viewer

Length: 822 bp
ATGATTAGAGATCAAAACATGGCTAATTTCCCTTGTGTTCCGAAAACAATCTCTCTTTTTTTGCTTTGTTATCTCATCACCTTCCTTTTTGATCTTGCTTATGCTGATCCTCCATACAAGTTGTGCTCAGATGTTCGCGGTTATGTCGAAAATAGTACGTTTCAGAAAAACCTTCAGAGCCTGCTCAATTCATTGCCTTCGAATGCTTCTGTTTCCAAGCTGTACAATACCTCCGTTGGAAATGAACCAGATAGAGTTTATGGCCTTTATATGTGCCTCGATTATGTTACGAATGAGACATGTCACAACTGCATCAACACCGCGCATTTAGACATTGTGAGGATTTGTCCCAACTCAACAGAATCAGTTGTGTGGGAGGAGACGTGCCAACTGCGCTACTCCGATATGAAGTTCTATGGTGAATTGAATATGGGAGGCAACATTCCATTGGCTAACAAGGAAAACGTTTCAGAGCCAAAAAAGTTTGAGTATACCGTGAAGGAGAAGCTGAGTGAGCTTGCGAAGCGAGCGGCATATAATGTTTCAGCGAAAATGTATGCTACTGGAGATGTACCATTTGAAGATAAAGTGATATATGCTCTTGTGCAGTGCACTAGAGACTTATCTGGAGATGACTGTGATAAATGCCTTCAGCGCGCCATAGAAGACGTTTTGAGAGAGTTTTATTTCTCCATTGGTGCACGGCTTCTGAGCCGGAGTTGCTATCTGAGGTACGAATTGTATGCCTTCTATAATGGTGCAACTCAAGCTTCTATTTCTAGCTCTCCGAATAACAACAAAGGGGACGGTGAGTACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr Stress-antifung

Protein Analysis

274

Amino Acids

31.04

Weight (kDa)

5.12

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 42 - 135 7.1e-22 Salt stress response/antifungal
Stress-antifung PF01657 154 - 247 5e-13 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 530
AccI GTMKAC 1 cut(s) 491
AccII CGCG 3 cut(s) 138, 323, 657
AciI CCGC 3 cut(s) 138, 321, 530
AclI AACGTT 1 cut(s) 465
AclWI GGATC 1 cut(s) 101
AcuI CTGAAG 2 cut(s) 158, 635
AfaI GTAC 5 cut(s) 157, 224, 573, 734, 815
AflIII ACRYGT 1 cut(s) 299
AgsI TTSAA 2 cut(s) 427, 581
AjiI CACGTC 1 cut(s) 384
AluBI AGCT 5 cut(s) 220, 508, 517, 770, 783
AluI AGCT 5 cut(s) 220, 508, 517, 770, 783
Alw21I GWGCWC 3 cut(s) 128, 614, 703
Alw26I GTCTC 3 cut(s) 290, 374, 612
Alw44I GTGCAC 2 cut(s) 610, 699
AlwI GGATC 1 cut(s) 101
AlwNI CAGNNNCTG 1 cut(s) 181
AoxI GGCC 1 cut(s) 262
ApaLI GTGCAC 2 cut(s) 610, 699
AspLEI GCGC 4 cut(s) 325, 396, 657, 659
AsuHPI GGTGA 3 cut(s) 70, 431, 821
AsuII TTCGAA 1 cut(s) 200
BaeGI GKGCMC 2 cut(s) 614, 703
BbsI GAAGAC 1 cut(s) 672
Bbv12I GWGCWC 3 cut(s) 128, 614, 703
BceAI ACGGC 1 cut(s) 719
BcgI CGANNNNNNTGC 2 cut(s) 725, 759
BcoDI GTCTC 3 cut(s) 290, 374, 612
BfaI CTAG 2 cut(s) 615, 780
BisI GCNGC 1 cut(s) 531
BlsI GCNGC 1 cut(s) 532
BmcAI AGTACT 1 cut(s) 815
BmgBI CACGTC 1 cut(s) 384
BmsI GCATC 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 672
BpmI CTGGAG 2 cut(s) 585, 648
Bpu14I TTCGAA 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 750
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 368, 398
Bse1I ACTGG 1 cut(s) 568
Bse3DI GCAATG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 191
BseMII CTCAG 4 cut(s) 141, 500, 701, 719
BseNI ACTGG 1 cut(s) 568
BsePI GCGCGC 1 cut(s) 655
BseRI GAGGAG 1 cut(s) 392
BseSI GKGCMC 2 cut(s) 614, 703
BsgI GTGCAG 1 cut(s) 626
Bsh1236I CGCG 3 cut(s) 138, 323, 657
BshFI GGCC 1 cut(s) 264
BsiHKAI GWGCWC 3 cut(s) 128, 614, 703
BsiSI CCGG 1 cut(s) 715
BslFI GGGAC 2 cut(s) 333, 818
BsmAI GTCTC 3 cut(s) 290, 374, 612
BsmBI CGTCTC 1 cut(s) 374
BsmFI GGGAC 2 cut(s) 333, 818
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 1 cut(s) 264
Bsp119I TTCGAA 1 cut(s) 200
Bsp1286I GDGCHC 3 cut(s) 128, 614, 703
Bsp1407I TGTACA 1 cut(s) 222
Bsp143I GATC 3 cut(s) 10, 91, 106
BspACI CCGC 3 cut(s) 138, 321, 530
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 4 cut(s) 140, 501, 702, 720
BspFNI CGCG 3 cut(s) 138, 323, 657
BspPI GGATC 1 cut(s) 101
BspT104I TTCGAA 1 cut(s) 200
BsrBI CCGCTC 1 cut(s) 530
BsrDI GCAATG 1 cut(s) 191
BsrGI TGTACA 1 cut(s) 222
BsrI ACTGG 1 cut(s) 568
BssHII GCGCGC 1 cut(s) 655
BssMI GATC 3 cut(s) 10, 91, 106
BssNAI GTATAC 1 cut(s) 492
Bst1107I GTATAC 1 cut(s) 492
Bst4CI ACNGT 3 cut(s) 496, 638, 809
BstAUI TGTACA 1 cut(s) 222
BstBI TTCGAA 1 cut(s) 200
BstC8I GCNNGC 4 cut(s) 182, 519, 528, 657
BstDEI CTNAG 4 cut(s) 127, 509, 710, 728
BstFNI CGCG 3 cut(s) 138, 323, 657
BstHHI GCGC 4 cut(s) 325, 396, 657, 659
BstKTI GATC 3 cut(s) 13, 94, 109
BstMAI GTCTC 3 cut(s) 290, 374, 612
BstMBI GATC 3 cut(s) 10, 91, 106
BstMWI GCNNNNNNNGC 7 cut(s) 393, 514, 523, 527, 654, 720, 767
BstNSI RCATGY 1 cut(s) 303
BstSLI GKGCMC 2 cut(s) 614, 703
BstUI CGCG 3 cut(s) 138, 323, 657
BstV2I GAAGAC 1 cut(s) 672
BstZ17I GTATAC 1 cut(s) 492
BsuRI GGCC 1 cut(s) 264
BtrI CACGTC 1 cut(s) 384
BtsI GCAGTG 1 cut(s) 614
BtsIMutI CAGTG 1 cut(s) 614
Cac8I GCNNGC 4 cut(s) 182, 519, 528, 657
CaiI CAGNNNCTG 1 cut(s) 181
CfoI GCGC 4 cut(s) 325, 396, 657, 659
Csp6I GTAC 5 cut(s) 156, 223, 572, 733, 814
CviAII CATG 2 cut(s) 19, 300
CviQI GTAC 5 cut(s) 156, 223, 572, 733, 814
DdeI CTNAG 4 cut(s) 127, 509, 710, 728
DpnI GATC 3 cut(s) 12, 93, 108
DpnII GATC 3 cut(s) 10, 91, 106
Eco57I CTGAAG 2 cut(s) 158, 635
Esp3I CGTCTC 1 cut(s) 374
FaeI CATG 2 cut(s) 22, 303
FaqI GGGAC 2 cut(s) 333, 818
FatI CATG 2 cut(s) 18, 299
FblI GTMKAC 1 cut(s) 491
Fnu4HI GCNGC 1 cut(s) 531
Fsp4HI GCNGC 1 cut(s) 531
FspBI CTAG 2 cut(s) 615, 780
GlaI GCGC 4 cut(s) 324, 395, 656, 658
GluI GCNGC 1 cut(s) 531
GsuI CTGGAG 2 cut(s) 585, 648
HaeIII GGCC 1 cut(s) 264
HapII CCGG 1 cut(s) 715
HhaI GCGC 4 cut(s) 325, 396, 657, 659
Hin1II CATG 2 cut(s) 22, 303
Hin6I GCGC 4 cut(s) 323, 394, 655, 657
HinP1I GCGC 4 cut(s) 323, 394, 655, 657
HindIII AAGCTT 1 cut(s) 768
HinfI GANTC 1 cut(s) 362
HpaII CCGG 1 cut(s) 715
HphI GGTGA 3 cut(s) 70, 431, 821
Hpy166II GTNNAC 3 cut(s) 492, 612, 701
Hpy188I TCNGA 9 cut(s) 42, 130, 165, 177, 403, 472, 711, 729, 789
Hpy188III TCNNGA 1 cut(s) 627
Hpy8I GTNNAC 3 cut(s) 492, 612, 701
HpyAV CCTTC 6 cut(s) 91, 182, 207, 493, 659, 757
HpyCH4III ACNGT 3 cut(s) 496, 638, 809
HpyCH4IV ACGT 4 cut(s) 158, 383, 465, 669
HpyCH4V TGCA 5 cut(s) 312, 607, 612, 701, 761
HpyF10VI GCNNNNNNNGC 7 cut(s) 393, 514, 523, 527, 654, 720, 767
HpyF3I CTNAG 4 cut(s) 127, 509, 710, 728
HpySE526I ACGT 4 cut(s) 158, 383, 465, 669
Hsp92II CATG 2 cut(s) 22, 303
HspAI GCGC 4 cut(s) 323, 394, 655, 657
Kzo9I GATC 3 cut(s) 10, 91, 106
LpnPI CCDG 5 cut(s) 194, 261, 549, 612, 728
LweI GCATC 1 cut(s) 321
MaeI CTAG 2 cut(s) 615, 780
MaeII ACGT 4 cut(s) 158, 383, 465, 669
MaeIII GTNAC 2 cut(s) 286, 302
MalI GATC 3 cut(s) 12, 93, 108
MbiI CCGCTC 1 cut(s) 530
MboI GATC 3 cut(s) 10, 91, 106
MboII GAAGA 2 cut(s) 593, 677
MhlI GDGCHC 3 cut(s) 128, 614, 703
MluCI AATT 4 cut(s) 25, 187, 422, 737
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 7 cut(s) 120, 241, 287, 333, 370, 428, 723
MseI TTAA 1 cut(s) 820
MspI CCGG 1 cut(s) 715
Mva1269I GAATGC 1 cut(s) 208
MvnI CGCG 3 cut(s) 138, 323, 657
MwoI GCNNNNNNNGC 7 cut(s) 393, 514, 523, 527, 654, 720, 767
NdeII GATC 3 cut(s) 10, 91, 106
NlaIII CATG 2 cut(s) 22, 303
NmuCI GTSAC 1 cut(s) 302
NspI RCATGY 1 cut(s) 303
NspV TTCGAA 1 cut(s) 200
PauI GCGCGC 1 cut(s) 655
PciI ACATGT 1 cut(s) 299
PctI GAATGC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 362
PkrI GCNGC 1 cut(s) 532
PscI ACATGT 1 cut(s) 299
Psp1406I AACGTT 1 cut(s) 465
PstNI CAGNNNCTG 1 cut(s) 181
PteI GCGCGC 1 cut(s) 655
RsaI GTAC 5 cut(s) 157, 224, 573, 734, 815
RsaNI GTAC 5 cut(s) 156, 223, 572, 733, 814
SaqAI TTAA 1 cut(s) 820
SatI GCNGC 1 cut(s) 531
Sau3AI GATC 3 cut(s) 10, 91, 106
ScaI AGTACT 1 cut(s) 815
SduI GDGCHC 3 cut(s) 128, 614, 703
SfaNI GCATC 1 cut(s) 321
SfuI TTCGAA 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 765
SmoI CTYRAG 1 cut(s) 765
Sse9I AATT 4 cut(s) 25, 187, 422, 737
SsiI CCGC 3 cut(s) 138, 321, 530
SspMI CTAG 2 cut(s) 615, 780
TaaI ACNGT 3 cut(s) 496, 638, 809
TaiI ACGT 4 cut(s) 161, 386, 468, 672
TaqI TCGA 3 cut(s) 147, 200, 279
TasI AATT 4 cut(s) 25, 187, 422, 737
TatI WGTACW 2 cut(s) 222, 813
TauI GCSGC 1 cut(s) 533
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 1 cut(s) 820
Tru9I TTAA 1 cut(s) 820
TscAI CASTG 1 cut(s) 614
TseFI GTSAC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 3 cut(s) 180, 258, 422
TspGWI ACGGA 1 cut(s) 223
TspRI CASTG 1 cut(s) 614
VneI GTGCAC 2 cut(s) 610, 699
XceI RCATGY 1 cut(s) 303
XmiI GTMKAC 1 cut(s) 491
XspI CTAG 2 cut(s) 615, 780
ZrmI AGTACT 1 cut(s) 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.