Rh5BG037000

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
2572086 .. 2573151
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG037000.1

Sequence Viewer

Length: 636 bp
ATGTTTCGTTTTCCAGTAATGTTTTTGCTTTGTTCTGTCATCATCTCTCTCTTTTGTGATCTTGCTTATGCTGACCCTCCGTATAAGCTATGCTCAAACACTTCCAACTATTCAGATAATAGTACGTTTGCGAAAAACCTCAACACTCTGCTCAATTCATTACCTTCCAGTGCTTCTGTTTCCAACTTGTACAATACAGCCTTTGGAAATGAGCCAGATAAAGTCTTTGCTCTTTACATGTGCCTCGACTATCTTGATCCCGGTTCCTGTCATGATTGCATAAACATGGCGCAACAAGACATTGTAAACATGTGTCCCAACTCCAAAGAAGCGGTTGTATGGGAGGAGAAGTGTCAACTGCGCTACTCCAATCAAAATTTCTATGTCAGATTGAATGTAGATGACAACATCCCCTTGGCTAACAAGAAGAATATATCAGTTCCTGAAACATTCAAGATAGTTGTGAACAAGATGCTGAGTAACCTCGCTAAGCAGGCGGCTTTTAATCTTTCACTGAACATGCAGGAAAATATGGTTGATCACAATCCTTACAATTGTGTCAGCATGCCTGGGGGTACTACTTGTAGTTTCCTGTGTCTGTCTTGCAATGAGAAAATCGAAGAAAAAAGGGAATAG

Protein Analysis

211

Amino Acids

23.82

Weight (kDa)

5.07

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 31 - 125 7.8e-23 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 332, 497
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 376
AfaI GTAC 3 cut(s) 124, 191, 577
AflIII ACRYGT 2 cut(s) 237, 309
AgsI TTSAA 2 cut(s) 394, 454
AjnI CCWGG 1 cut(s) 568
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
AlwI GGATC 1 cut(s) 251
AlwNI CAGNNNCTG 1 cut(s) 443
ApoI RAATTY 1 cut(s) 376
AspLEI GCGC 2 cut(s) 292, 363
AsuC2I CCSGG 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 570
BclI TGATCA 1 cut(s) 538
BcnI CCSGG 1 cut(s) 261
BisI GCNGC 1 cut(s) 498
BlpI GCTNAGC 1 cut(s) 489
BlsI GCNGC 1 cut(s) 499
Bme1390I CCNGG 2 cut(s) 261, 570
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 2 cut(s) 261, 570
BmsI GCATC 1 cut(s) 462
Bpu1102I GCTNAGC 1 cut(s) 489
BpuMI CCSGG 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 543
BsaJI CCNNGG 2 cut(s) 414, 569
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bse1I ACTGG 2 cut(s) 14, 168
Bse3DI GCAATG 1 cut(s) 613
Bse8I GATNNNNATC 1 cut(s) 543
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 2 cut(s) 414, 569
BseGI GGATG 1 cut(s) 408
BseJI GATNNNNATC 1 cut(s) 543
BseMI GCAATG 1 cut(s) 613
BseMII CTCAG 1 cut(s) 467
BseNI ACTGG 2 cut(s) 14, 168
BseRI GAGGAG 1 cut(s) 359
BsiSI CCGG 1 cut(s) 261
BslFI GGGAC 1 cut(s) 300
BsmFI GGGAC 1 cut(s) 300
Bsp1407I TGTACA 1 cut(s) 189
Bsp143I GATC 3 cut(s) 58, 256, 538
Bsp1720I GCTNAGC 1 cut(s) 489
BspACI CCGC 2 cut(s) 332, 497
BspCNI CTCAG 1 cut(s) 468
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 265
BspPI GGATC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 613
BsrGI TGTACA 1 cut(s) 189
BsrI ACTGG 2 cut(s) 14, 168
BssECI CCNNGG 2 cut(s) 414, 569
BssMI GATC 3 cut(s) 58, 256, 538
BssT1I CCWWGG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 570
BstAUI TGTACA 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 495, 566
BstDEI CTNAG 2 cut(s) 476, 489
BstF5I GGATG 1 cut(s) 408
BstHHI GCGC 2 cut(s) 292, 363
BstKTI GATC 3 cut(s) 61, 259, 541
BstMBI GATC 3 cut(s) 58, 256, 538
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNI CCWGG 1 cut(s) 570
BstNSI RCATGY 4 cut(s) 241, 313, 523, 568
BstSCI CCNGG 2 cut(s) 259, 568
BtsCI GGATG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 175, 512
Cac8I GCNNGC 2 cut(s) 495, 566
CaiI CAGNNNCTG 1 cut(s) 443
CciI TCATGA 1 cut(s) 271
CfoI GCGC 2 cut(s) 292, 363
Csp6I GTAC 3 cut(s) 123, 190, 576
CviAII CATG 6 cut(s) 238, 272, 286, 310, 520, 565
CviJI RGCY 5 cut(s) 88, 200, 214, 419, 500
CviKI_1 RGCY 5 cut(s) 88, 200, 214, 419, 500
CviQI GTAC 3 cut(s) 123, 190, 576
DdeI CTNAG 2 cut(s) 476, 489
DpnI GATC 3 cut(s) 60, 258, 540
DpnII GATC 3 cut(s) 58, 256, 538
Eco130I CCWWGG 1 cut(s) 414
EcoRII CCWGG 1 cut(s) 568
EcoT14I CCWWGG 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 6 cut(s) 241, 275, 289, 313, 523, 568
FaqI GGGAC 1 cut(s) 300
FatI CATG 6 cut(s) 237, 271, 285, 309, 519, 564
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 1 cut(s) 498
FokI GGATG 1 cut(s) 395
Fsp4HI GCNGC 1 cut(s) 498
GlaI GCGC 2 cut(s) 291, 362
GluI GCNGC 1 cut(s) 498
HapII CCGG 1 cut(s) 261
HhaI GCGC 2 cut(s) 292, 363
Hin1II CATG 6 cut(s) 241, 275, 289, 313, 523, 568
Hin6I GCGC 2 cut(s) 290, 361
HinP1I GCGC 2 cut(s) 290, 361
HincII GTYRAC 1 cut(s) 356
HindII GTYRAC 1 cut(s) 356
HpaII CCGG 1 cut(s) 261
Hpy166II GTNNAC 3 cut(s) 307, 356, 466
Hpy188I TCNGA 2 cut(s) 115, 389
Hpy188III TCNNGA 4 cut(s) 254, 272, 443, 454
Hpy8I GTNNAC 3 cut(s) 307, 356, 466
HpyAV CCTTC 1 cut(s) 174
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 3 cut(s) 279, 523, 606
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 2 cut(s) 476, 489
HpySE526I ACGT 1 cut(s) 125
Hsp92II CATG 6 cut(s) 241, 275, 289, 313, 523, 568
HspAI GCGC 2 cut(s) 290, 361
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 3 cut(s) 58, 256, 538
LweI GCATC 1 cut(s) 462
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 479
MalI GATC 3 cut(s) 60, 258, 540
MboI GATC 3 cut(s) 58, 256, 538
MboII GAAGA 2 cut(s) 439, 632
MfeI CAATTG 1 cut(s) 553
MluCI AATT 3 cut(s) 154, 376, 553
MmeI TCCRAC 2 cut(s) 129, 207
MnlI CCTC 5 cut(s) 87, 149, 254, 337, 494
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 284
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 2 cut(s) 261, 570
MunI CAATTG 1 cut(s) 553
MvaI CCWGG 1 cut(s) 570
MwoI GCNNNNNNNGC 1 cut(s) 494
NciI CCSGG 1 cut(s) 261
NdeII GATC 3 cut(s) 58, 256, 538
NlaIII CATG 6 cut(s) 241, 275, 289, 313, 523, 568
NlaIV GGNNCC 1 cut(s) 265
NspI RCATGY 4 cut(s) 241, 313, 523, 568
PaeI GCATGC 1 cut(s) 568
PagI TCATGA 1 cut(s) 271
PciI ACATGT 2 cut(s) 237, 309
PkrI GCNGC 1 cut(s) 499
PscI ACATGT 2 cut(s) 237, 309
Psp6I CCWGG 1 cut(s) 568
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 443
RsaI GTAC 3 cut(s) 124, 191, 577
RsaNI GTAC 3 cut(s) 123, 190, 576
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 1 cut(s) 498
Sau3AI GATC 3 cut(s) 58, 256, 538
ScrFI CCNGG 2 cut(s) 261, 570
SetI ASST 5 cut(s) 90, 128, 141, 166, 486
SfaNI GCATC 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 284
SphI GCATGC 1 cut(s) 568
Sse9I AATT 3 cut(s) 154, 376, 553
SsiI CCGC 2 cut(s) 332, 497
StyD4I CCNGG 2 cut(s) 259, 568
StyI CCWWGG 1 cut(s) 414
TaiI ACGT 1 cut(s) 128
TaqI TCGA 2 cut(s) 246, 618
TasI AATT 3 cut(s) 154, 376, 553
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 500
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 2 cut(s) 175, 519
TspDTI ATGAA 1 cut(s) 147
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 2 cut(s) 175, 519
XapI RAATTY 1 cut(s) 376
XceI RCATGY 4 cut(s) 241, 313, 523, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.