Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027892.1

Orthogroup ID

OG0000635

Physical Location & Seq

Genomic Coordinates Forward (+)

19 .. 966

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027892.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgaaaagtgcacaacttgattggaccggacgtaaaaacattattactggaattgcaaggggaattctctacttgcatgaggattctcgacttagaatcatccacagagacttgaaagctagcaatgtattactggacaatgagatgaacccaaagatctcagattttggcatggccaggatctttgcaggaagtgaaggacaagctaatactgctacaatagttgggacttatggatatatggccccggagtatgctatggagggactatattctgtcaagtccgatgtttatggctttggagtactcttgctggagatcataactgggagaaggaacactggctgtcatttactaaaacgtgcgcctagcctcataacttatgcatggaaattatgggatgaaggaaaagggttggagctaattgatccgtcactggctggttcatgtgatccagaagaattcttaagatatctccacattggtttgttgtgtgttcaagaagatgcaaatgacaggccaaccatgtcttctgcagttgtaatgttgaaaagcgaaactgtaagtctcactcaacctgaaaaacctgctttcaacatgggaagattcactaatcagcatactgagggaggtgctgatagttgctcaattaatggattaacagtttctaatatcatgcctcggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3403 Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

228

Amino Acids

25.18

Weight (kDa)

5.97

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000635)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica	MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica	Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis	pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis	RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata	RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora	Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa	Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha	Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana	Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	595
AclWI	GGATC	3 cut(s)	188, 422, 446
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	2 cut(s)	63, 461
AfaI	GTAC	1 cut(s)	306
AflII	CTTAAG	1 cut(s)	466
AgsI	TTSAA	4 cut(s)	115, 500, 550, 595
AjnI	CCWGG	1 cut(s)	176
AjuI	GAANNNNNNNTTGG	2 cut(s)	514, 546
AluBI	AGCT	3 cut(s)	119, 206, 421
AluI	AGCT	3 cut(s)	119, 206, 421
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	2 cut(s)	102, 572
Alw44I	GTGCAC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	188, 422, 446
AoxI	GGCC	3 cut(s)	174, 243, 518
ApaLI	GTGCAC	1 cut(s)	9
ApoI	RAATTY	2 cut(s)	63, 461
AseI	ATTAAT	1 cut(s)	651
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	2 cut(s)	24, 244
AsuC2I	CCSGG	1 cut(s)	248
AsuNHI	GCTAGC	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	13
BalI	TGGCCA	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	248
BcoDI	GTCTC	2 cut(s)	102, 572
BfaI	CTAG	2 cut(s)	120, 369
BfmI	CTRYAG	1 cut(s)	534
BfrI	CTTAAG	1 cut(s)	466
BfuAI	ACCTGC	1 cut(s)	595
BglII	AGATCT	1 cut(s)	156
BmcAI	AGTACT	1 cut(s)	306
Bme1390I	CCNGG	2 cut(s)	178, 248
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	24, 244
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	2 cut(s)	178, 248
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	496
BmtI	GCTAGC	1 cut(s)	123
BmuI	ACTGGG	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	522
BpmI	CTGGAG	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	246, 680
BsaWI	WCCGGW	1 cut(s)	26
Bse1I	ACTGG	5 cut(s)	52, 138, 331, 346, 441
Bse3DI	GCAATG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	178
BseDI	CCNNGG	2 cut(s)	246, 680
BseGI	GGATG	2 cut(s)	99, 406
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	2 cut(s)	174, 615
BseNI	ACTGG	5 cut(s)	52, 138, 331, 346, 441
BseSI	GKGCMC	1 cut(s)	13
BshFI	GGCC	3 cut(s)	176, 245, 520
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	27, 248
BslFI	GGGAC	2 cut(s)	241, 279
BsmAI	GTCTC	2 cut(s)	102, 572
BsmFI	GGGAC	2 cut(s)	241, 279
BsnI	GGCC	3 cut(s)	176, 245, 520
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	5 cut(s)	156, 180, 318, 427, 451
BspANI	GGCC	3 cut(s)	176, 245, 520
BspCNI	CTCAG	2 cut(s)	173, 616
BspLI	GGNNCC	1 cut(s)	246
BspMAI	CTGCAG	1 cut(s)	538
BspMI	ACCTGC	1 cut(s)	595
BspOI	GCTAGC	1 cut(s)	123
BspPI	GGATC	3 cut(s)	188, 422, 446
BspTI	CTTAAG	1 cut(s)	466
BsrDI	GCAATG	1 cut(s)	130
BsrI	ACTGG	5 cut(s)	52, 138, 331, 346, 441
BssECI	CCNNGG	2 cut(s)	246, 680
BssMI	GATC	5 cut(s)	156, 180, 318, 427, 451
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	2 cut(s)	562, 664
BstAFI	CTTAAG	1 cut(s)	466
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	3 cut(s)	92, 160, 624
BstF5I	GGATG	2 cut(s)	99, 406
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	5 cut(s)	159, 183, 321, 430, 454
BstMAI	GTCTC	2 cut(s)	102, 572
BstMBI	GATC	5 cut(s)	156, 180, 318, 427, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	178
BstSCI	CCNGG	2 cut(s)	176, 246
BstSFI	CTRYAG	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	13
BstV2I	GAAGAC	1 cut(s)	522
BstX2I	RGATCY	2 cut(s)	156, 180
BstYI	RGATCY	2 cut(s)	156, 180
BsuRI	GGCC	3 cut(s)	176, 245, 520
BtsCI	GGATG	2 cut(s)	99, 406
BtsIMutI	CAGTG	2 cut(s)	339, 434
BveI	ACCTGC	1 cut(s)	595
Cac8I	GCNNGC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	24, 244
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	7 cut(s)	77, 172, 387, 447, 526, 598, 676
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	3 cut(s)	92, 160, 624
DpnI	GATC	5 cut(s)	158, 182, 320, 429, 453
DpnII	GATC	5 cut(s)	156, 180, 318, 427, 451
EaeI	YGGCCR	1 cut(s)	174
Eco32I	GATATC	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	24
EcoRI	GAATTC	2 cut(s)	63, 461
EcoRII	CCWGG	1 cut(s)	176
EcoRV	GATATC	1 cut(s)	473
EcoT22I	ATGCAT	1 cut(s)	388
FaeI	CATG	7 cut(s)	80, 175, 390, 450, 529, 601, 679
FaqI	GGGAC	2 cut(s)	241, 279
FatI	CATG	7 cut(s)	76, 171, 386, 446, 525, 597, 675
FokI	GGATG	2 cut(s)	86, 413
FspBI	CTAG	2 cut(s)	120, 369
GlaI	GCGC	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	3 cut(s)	176, 245, 520
HapII	CCGG	2 cut(s)	27, 248
HhaI	GCGC	1 cut(s)	367
Hin1II	CATG	7 cut(s)	80, 175, 390, 450, 529, 601, 679
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HinfI	GANTC	3 cut(s)	83, 96, 606
HpaII	CCGG	2 cut(s)	27, 248
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	2 cut(s)	163, 286
Hpy188III	TCNNGA	3 cut(s)	87, 455, 500
Hpy8I	GTNNAC	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	191, 327, 398
HpyCH4III	ACNGT	2 cut(s)	562, 664
HpyCH4IV	ACGT	2 cut(s)	31, 361
HpyCH4V	TGCA	7 cut(s)	11, 56, 76, 188, 386, 509, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	3 cut(s)	92, 160, 624
HpySE526I	ACGT	2 cut(s)	31, 361
Hsp92II	CATG	7 cut(s)	80, 175, 390, 450, 529, 601, 679
HspAI	GCGC	1 cut(s)	365
Kzo9I	GATC	5 cut(s)	156, 180, 318, 427, 451
LmnI	GCTCC	1 cut(s)	418
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	2 cut(s)	120, 369
MaeII	ACGT	2 cut(s)	31, 361
MaeIII	GTNAC	1 cut(s)	432
MalI	GATC	5 cut(s)	158, 182, 320, 429, 453
MboI	GATC	5 cut(s)	156, 180, 318, 427, 451
MboII	GAAGA	4 cut(s)	470, 515, 522, 615
MflI	RGATCY	2 cut(s)	156, 180
MhlI	GDGCHC	1 cut(s)	13
MlsI	TGGCCA	1 cut(s)	176
MluCI	AATT	6 cut(s)	51, 63, 392, 423, 461, 648
MluNI	TGGCCA	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	5 cut(s)	73, 256, 383, 619, 623
Mox20I	TGGCCA	1 cut(s)	176
Mph1103I	ATGCAT	1 cut(s)	388
MscI	TGGCCA	1 cut(s)	176
MseI	TTAA	3 cut(s)	467, 651, 659
Msp20I	TGGCCA	1 cut(s)	176
MspCI	CTTAAG	1 cut(s)	466
MspI	CCGG	2 cut(s)	27, 248
MspR9I	CCNGG	2 cut(s)	178, 248
MvaI	CCWGG	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	212
NciI	CCSGG	1 cut(s)	248
NdeII	GATC	5 cut(s)	156, 180, 318, 427, 451
NheI	GCTAGC	1 cut(s)	119
NlaIII	CATG	7 cut(s)	80, 175, 390, 450, 529, 601, 679
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	432
NsiI	ATGCAT	1 cut(s)	388
PfeI	GAWTC	3 cut(s)	83, 96, 606
PshBI	ATTAAT	1 cut(s)	651
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	24, 244
PstI	CTGCAG	1 cut(s)	538
PsuI	RGATCY	2 cut(s)	156, 180
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SaqAI	TTAA	3 cut(s)	467, 651, 659
Sau3AI	GATC	5 cut(s)	156, 180, 318, 427, 451
Sau96I	GGNCC	2 cut(s)	24, 244
ScaI	AGTACT	1 cut(s)	306
ScrFI	CCNGG	2 cut(s)	178, 248
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	8 cut(s)	34, 121, 208, 364, 423, 580, 589, 634
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	534
SinI	GGWCC	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	6 cut(s)	51, 63, 392, 423, 461, 648
SspMI	CTAG	2 cut(s)	120, 369
StyD4I	CCNGG	2 cut(s)	176, 246
TaaI	ACNGT	2 cut(s)	562, 664
TaiI	ACGT	2 cut(s)	34, 364
TaqI	TCGA	1 cut(s)	88
TasI	AATT	6 cut(s)	51, 63, 392, 423, 461, 648
TatI	WGTACW	1 cut(s)	304
TfiI	GAWTC	3 cut(s)	83, 96, 606
Tru1I	TTAA	3 cut(s)	467, 651, 659
Tru9I	TTAA	3 cut(s)	467, 651, 659
TscAI	CASTG	2 cut(s)	346, 441
TseFI	GTSAC	1 cut(s)	432
Tsp45I	GTSAC	1 cut(s)	432
TspDTI	ATGAA	4 cut(s)	17, 161, 417, 435
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	2 cut(s)	346, 441
Vha464I	CTTAAG	1 cut(s)	466
VneI	GTGCAC	1 cut(s)	9
VpaK11BI	GGWCC	1 cut(s)	24
VspI	ATTAAT	1 cut(s)	651
XapI	RAATTY	2 cut(s)	63, 461
XspI	CTAG	2 cut(s)	120, 369
ZrmI	AGTACT	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.