Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000635

Physical Location & Seq

Genomic Coordinates Reverse (-)

27888445 .. 27889721

Gene Structure 1277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g26600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGATAAAGATAAACTTCTTGTAATGCTTTTTGCAATTATTCTGCTGTTGATGCCAGCTGCCCTTTCTCCTACTGATCCCCTTACAAGTTTTTGTTCAGGTGGTGACAGAAAGAGCCAATTTGAAAGCAATCTCGAGCGGCTACTTGAGTCATTATCTTCCAACACTTCGATCAAAGGAGGTTTCTATAACGATACGATTGGAGATGGACGGGATGTAGTCTATGGACAAGCACTTTGTAGATGGGATGTTAACCCCACAGTTTGTCAAAACTGTGTCGATGAAGCAAGGAAGGAAATCTTCAAGAGGTGCAAAACAACGGATGCAATGATTTGGTACGAGCTATGTCAAGTTCGATATTCTTACCAGATGTTCTTTCAACTAATGGTCTACACCGGAAAGTATCCGGACAAGAATAATCGGGAGAAGAACGTATCAAAACCACACCATTTCAACGTTGTATTGACCTGTTTAATGATAAACCTCTCTGAAGCAGCGGCGTTTAGTCCCTCCAAGAATATGTTTGCAACTGGGAAAATTAAATTTTCTGGAAAGGATACAATTTATGGCTTACAGCAGTGCACTAGAGACATTTCTGCAAGTGAATGCCATAGCTGTTTGAATTCTGCTCGCATAGATCTTTTGGGATGTTGCTCTTCTAAACAAGGTGGAACTGTTGTTTGTAGGAATTGCAATGTGAGGTTTGAGCTGTTCCCCTTTTTTAATGACACGTCAAATTCTTTGGTAATCCATCCACATTCCAAAGGGGACAGATTAAAGAATGGGAAGGCAGTTATACTTGTTTCTGCATCCATCATACTGTTAGCAGCCACTGTATTTTGTGCTGTCCATCTCCGGCGCAAAAAGGGATCAGAGGATGTCAAAGATGAAGTAAAAAACGAGCATGTACTATTACAAGATTTGGCAAGCCCCACTGGAATCACAATCTCAGAAGAAGGGATGTTCATAATTTCTGAGAAGCTGGCCTTCATCGATCTAGCTACTATAGAGATAGCTACAAATGACTTTTCGGATTTAAACAAGCTTGGACAAGGTTGGTACTGTTTACAAGGTAATGATAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3403 Pkinase_Tyr Stress-antifung

Protein Analysis

363

Amino Acids

40.4

Weight (kDa)

7.0

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	36 - 121	5.5e-21	Salt stress response/antifungal
Stress-antifung	PF01657	142 - 236	2.6e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000635)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica	MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica	Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis	pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis	RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata	RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora	Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa	Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha	Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana	Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	390
AccIII	TCCGGA	1 cut(s)	406
AciI	CCGC	2 cut(s)	139, 497
AclI	AACGTT	1 cut(s)	456
AclWI	GGATC	2 cut(s)	71, 877
AcsI	RAATTY	3 cut(s)	542, 622, 736
AcuI	CTGAAG	1 cut(s)	510
AfaI	GTAC	3 cut(s)	338, 909, 1061
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	5 cut(s)	125, 304, 380, 454, 622
AjiI	CACGTC	1 cut(s)	732
AluBI	AGCT	8 cut(s)	59, 343, 615, 709, 982, 1001, 1016, 1045
AluI	AGCT	8 cut(s)	59, 343, 615, 709, 982, 1001, 1016, 1045
Alw21I	GWGCWC	1 cut(s)	584
Alw26I	GTCTC	1 cut(s)	582
Alw44I	GTGCAC	1 cut(s)	580
AlwI	GGATC	2 cut(s)	71, 877
AlwNI	CAGNNNCTG	1 cut(s)	833
Ama87I	CYCGRG	1 cut(s)	134
Aor13HI	TCCGGA	1 cut(s)	406
AoxI	GGCC	1 cut(s)	984
ApaLI	GTGCAC	1 cut(s)	580
ApeKI	GCWGC	3 cut(s)	59, 494, 827
ApoI	RAATTY	3 cut(s)	542, 622, 736
ArsI	GACNNNNNNTTYG	2 cut(s)	219, 251
AspLEI	GCGC	1 cut(s)	861
AsuHPI	GGTGA	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	584
Bbv12I	GWGCWC	1 cut(s)	584
BbvI	GCAGC	3 cut(s)	46, 506, 839
BccI	CCATC	5 cut(s)	200, 237, 759, 821, 858
BciVI	GTATCC	2 cut(s)	414, 550
BcoDI	GTCTC	1 cut(s)	582
BfaI	CTAG	2 cut(s)	585, 998
BfmI	CTRYAG	1 cut(s)	1005
BfuI	GTATCC	2 cut(s)	414, 550
BglII	AGATCT	1 cut(s)	637
BisI	GCNGC	5 cut(s)	60, 140, 495, 498, 828
BlsI	GCNGC	5 cut(s)	61, 141, 496, 499, 829
BmeT110I	CYCGRG	1 cut(s)	134
BmgBI	CACGTC	1 cut(s)	732
BmrI	ACTGGG	1 cut(s)	540
BmsI	GCATC	3 cut(s)	42, 313, 818
BmuI	ACTGGG	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	167
Bsa29I	ATCGAT	1 cut(s)	993
BsaWI	WCCGGW	2 cut(s)	395, 406
Bse1I	ACTGG	2 cut(s)	535, 940
Bse3DI	GCAATG	2 cut(s)	333, 700
BseAI	TCCGGA	1 cut(s)	406
BseCI	ATCGAT	1 cut(s)	993
BseGI	GGATG	8 cut(s)	220, 253, 328, 653, 751, 809, 883, 966
BseMI	GCAATG	2 cut(s)	333, 700
BseMII	CTCAG	2 cut(s)	963, 966
BseNI	ACTGG	2 cut(s)	535, 940
BseSI	GKGCMC	1 cut(s)	584
BseXI	GCAGC	3 cut(s)	46, 506, 839
BshFI	GGCC	1 cut(s)	986
BshVI	ATCGAT	1 cut(s)	993
BsiHKAI	GWGCWC	1 cut(s)	584
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	3 cut(s)	396, 407, 856
BslFI	GGGAC	2 cut(s)	492, 782
BsmAI	GTCTC	1 cut(s)	582
BsmFI	GGGAC	2 cut(s)	492, 782
BsmI	GAATGC	1 cut(s)	611
BsnI	GGCC	1 cut(s)	986
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	584
Bsp13I	TCCGGA	1 cut(s)	406
Bsp143I	GATC	5 cut(s)	76, 171, 637, 869, 994
BspACI	CCGC	2 cut(s)	139, 497
BspANI	GGCC	1 cut(s)	986
BspCNI	CTCAG	2 cut(s)	962, 967
BspDI	ATCGAT	1 cut(s)	993
BspEI	TCCGGA	1 cut(s)	406
BspPI	GGATC	2 cut(s)	71, 877
BspQI	GCTCTTC	1 cut(s)	661
BsrBI	CCGCTC	1 cut(s)	139
BsrDI	GCAATG	2 cut(s)	333, 700
BsrI	ACTGG	2 cut(s)	535, 940
BssMI	GATC	5 cut(s)	76, 171, 637, 869, 994
Bst4CI	ACNGT	6 cut(s)	262, 275, 676, 822, 835, 1064
Bst6I	CTCTTC	1 cut(s)	661
BstC8I	GCNNGC	4 cut(s)	57, 631, 928, 984
BstDEI	CTNAG	2 cut(s)	949, 975
BstF5I	GGATG	8 cut(s)	220, 253, 328, 653, 751, 809, 883, 966
BstHHI	GCGC	1 cut(s)	861
BstKTI	GATC	5 cut(s)	79, 174, 640, 872, 997
BstMAI	GTCTC	1 cut(s)	582
BstMBI	GATC	5 cut(s)	76, 171, 637, 869, 994
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNSI	RCATGY	1 cut(s)	908
BstSFI	CTRYAG	1 cut(s)	1005
BstSLI	GKGCMC	1 cut(s)	584
BstV1I	GCAGC	3 cut(s)	46, 506, 839
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
Bsu15I	ATCGAT	1 cut(s)	993
BsuI	GTATCC	2 cut(s)	414, 550
BsuRI	GGCC	1 cut(s)	986
BsuTUI	ATCGAT	1 cut(s)	993
BtrI	CACGTC	1 cut(s)	732
BtsCI	GGATG	8 cut(s)	220, 253, 328, 653, 751, 809, 883, 966
BtsI	GCAGTG	1 cut(s)	584
BtsIMutI	CAGTG	3 cut(s)	584, 831, 933
Cac8I	GCNNGC	4 cut(s)	57, 631, 928, 984
CaiI	CAGNNNCTG	1 cut(s)	833
CfoI	GCGC	1 cut(s)	861
ClaI	ATCGAT	1 cut(s)	993
Csp6I	GTAC	3 cut(s)	337, 908, 1060
CviAII	CATG	1 cut(s)	905
CviQI	GTAC	3 cut(s)	337, 908, 1060
DdeI	CTNAG	2 cut(s)	949, 975
DpnI	GATC	5 cut(s)	78, 173, 639, 871, 996
DpnII	GATC	5 cut(s)	76, 171, 637, 869, 994
DraI	TTTAAA	1 cut(s)	1038
Eam1104I	CTCTTC	1 cut(s)	661
EarI	CTCTTC	1 cut(s)	661
Eco57I	CTGAAG	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	622
FaeI	CATG	1 cut(s)	908
FalI	AAGNNNNNCTT	5 cut(s)	32, 284, 316, 971, 1003
FaqI	GGGAC	2 cut(s)	492, 782
FatI	CATG	1 cut(s)	904
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	5 cut(s)	60, 140, 495, 498, 828
FokI	GGATG	8 cut(s)	227, 260, 335, 660, 738, 796, 890, 973
Fsp4HI	GCNGC	5 cut(s)	60, 140, 495, 498, 828
FspBI	CTAG	2 cut(s)	585, 998
GlaI	GCGC	1 cut(s)	860
GluI	GCNGC	5 cut(s)	60, 140, 495, 498, 828
HaeIII	GGCC	1 cut(s)	986
HapII	CCGG	3 cut(s)	396, 407, 856
HhaI	GCGC	1 cut(s)	861
Hin1II	CATG	1 cut(s)	908
Hin6I	GCGC	1 cut(s)	859
HinP1I	GCGC	1 cut(s)	859
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	1043
HinfI	GANTC	2 cut(s)	149, 939
HpaI	GTTAAC	1 cut(s)	253
HpaII	CCGG	3 cut(s)	396, 407, 856
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	4 cut(s)	253, 391, 582, 1067
Hpy188I	TCNGA	5 cut(s)	490, 874, 952, 976, 1033
Hpy188III	TCNNGA	5 cut(s)	134, 304, 407, 422, 549
Hpy8I	GTNNAC	4 cut(s)	253, 391, 582, 1067
HpyAV	CCTTC	4 cut(s)	286, 781, 950, 997
HpyCH4III	ACNGT	6 cut(s)	262, 275, 676, 822, 835, 1064
HpyCH4IV	ACGT	3 cut(s)	432, 456, 731
HpyCH4V	TGCA	8 cut(s)	35, 312, 326, 527, 582, 599, 693, 809
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	2 cut(s)	949, 975
HpySE526I	ACGT	3 cut(s)	432, 456, 731
Hsp92II	CATG	1 cut(s)	908
HspAI	GCGC	1 cut(s)	859
Kpn2I	TCCGGA	1 cut(s)	406
KspAI	GTTAAC	1 cut(s)	253
Kzo9I	GATC	5 cut(s)	76, 171, 637, 869, 994
LguI	GCTCTTC	1 cut(s)	661
Lsp1109I	GCAGC	3 cut(s)	46, 506, 839
LweI	GCATC	3 cut(s)	42, 313, 818
MaeI	CTAG	2 cut(s)	585, 998
MaeII	ACGT	3 cut(s)	432, 456, 731
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	5 cut(s)	78, 173, 639, 871, 996
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	5 cut(s)	76, 171, 637, 869, 994
MboII	GAAGA	5 cut(s)	150, 292, 439, 648, 965
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	1 cut(s)	584
MluCI	AATT	9 cut(s)	36, 119, 537, 542, 561, 622, 688, 736, 969
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	6 cut(s)	173, 300, 494, 520, 693, 868
MroI	TCCGGA	1 cut(s)	406
MseI	TTAA	6 cut(s)	252, 473, 540, 723, 776, 1037
MspA1I	CMGCKG	2 cut(s)	59, 497
MspI	CCGG	3 cut(s)	396, 407, 856
Mva1269I	GAATGC	1 cut(s)	611
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	5 cut(s)	76, 171, 637, 869, 994
NlaIII	CATG	1 cut(s)	908
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	908
PaeR7I	CTCGAG	1 cut(s)	134
PciSI	GCTCTTC	1 cut(s)	661
PctI	GAATGC	1 cut(s)	611
PfeI	GAWTC	1 cut(s)	939
PkrI	GCNGC	5 cut(s)	61, 141, 496, 499, 829
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp1406I	AACGTT	1 cut(s)	456
PstNI	CAGNNNCTG	1 cut(s)	833
PsuI	RGATCY	1 cut(s)	637
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	3 cut(s)	338, 909, 1061
RsaNI	GTAC	3 cut(s)	337, 908, 1060
SapI	GCTCTTC	1 cut(s)	661
SaqAI	TTAA	6 cut(s)	252, 473, 540, 723, 776, 1037
SatI	GCNGC	5 cut(s)	60, 140, 495, 498, 828
Sau3AI	GATC	5 cut(s)	76, 171, 637, 869, 994
SchI	GAGTC	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	584
SfaNI	GCATC	3 cut(s)	42, 313, 818
SfcI	CTRYAG	1 cut(s)	1005
Sfr274I	CTCGAG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	134
SmlI	CTYRAG	2 cut(s)	134, 146
SmoI	CTYRAG	2 cut(s)	134, 146
Sse9I	AATT	9 cut(s)	36, 119, 537, 542, 561, 622, 688, 736, 969
SsiI	CCGC	2 cut(s)	139, 497
SspMI	CTAG	2 cut(s)	585, 998
TaaI	ACNGT	6 cut(s)	262, 275, 676, 822, 835, 1064
TaiI	ACGT	3 cut(s)	435, 459, 734
TaqI	TCGA	5 cut(s)	135, 170, 279, 355, 993
TasI	AATT	9 cut(s)	36, 119, 537, 542, 561, 622, 688, 736, 969
TatI	WGTACW	1 cut(s)	907
TauI	GCSGC	2 cut(s)	142, 500
TfiI	GAWTC	1 cut(s)	939
Tru1I	TTAA	6 cut(s)	252, 473, 540, 723, 776, 1037
Tru9I	TTAA	6 cut(s)	252, 473, 540, 723, 776, 1037
TscAI	CASTG	3 cut(s)	584, 838, 940
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	3 cut(s)	59, 494, 827
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	4 cut(s)	297, 903, 955, 979
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	3 cut(s)	584, 838, 940
VneI	GTGCAC	1 cut(s)	580
XapI	RAATTY	3 cut(s)	542, 622, 736
XceI	RCATGY	1 cut(s)	908
XhoI	CTCGAG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	390
XspI	CTAG	2 cut(s)	585, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.