Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Reverse (-)

14173959 .. 14176461

Gene Structure 2503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1179900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAATATGTTAGAAGTGAACTTGGATTCACTGCTAGAACTGGAAATGCATAAATGTGGTTGTTTGAATGAAGGCCGGAGAATTTTTTATGAAATGCCGGTGAAAAACATGTTCTGTTGTACTTGTGTGGTATCTGGCTCTGTAAATTGTGTAGGTTTGGTGAGGCAAGAGAAGTGTTTTATGGGTATGTATGTACAATTCAATTATACTACCATTTTAACGAGGCGGGCGGCTCTATTCCAAGAGATGCAAACTAAAATGTTAGGGGATAAATTTACAGCGGTTGCTCTTCACAGGCTGTGCTCGGTTGGGAGCATTAGAGCAAGAGGAATGGATTCGCAGGTATATCGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

119

Amino Acids

13.52

Weight (kDa)

8.68

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	331
AciI	CCGC	3 cut(s)	226, 230, 281
AcsI	RAATTY	2 cut(s)	81, 272
AfaI	GTAC	2 cut(s)	121, 195
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	2 cut(s)	67, 202
Alw21I	GWGCWC	1 cut(s)	305
AoxI	GGCC	1 cut(s)	73
ApoI	RAATTY	2 cut(s)	81, 272
Asp700I	GAANNNNTTC	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	112, 172
Bbv12I	GWGCWC	1 cut(s)	305
BcgI	CGANNNNNNTGC	1 cut(s)	329
BfaI	CTAG	1 cut(s)	35
BfuAI	ACCTGC	1 cut(s)	331
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BmsI	GCATC	1 cut(s)	237
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	305
BsiSI	CCGG	2 cut(s)	76, 98
BsnI	GGCC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp1407I	TGTACA	1 cut(s)	193
BspACI	CCGC	3 cut(s)	226, 230, 281
BspANI	GGCC	1 cut(s)	75
BspMI	ACCTGC	1 cut(s)	331
BspQI	GCTCTTC	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	97
BsrGI	TGTACA	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	97
Bst6I	CTCTTC	1 cut(s)	294
BstAUI	TGTACA	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	120, 194
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	4 cut(s)	75, 138, 233, 298
CviKI_1	RGCY	4 cut(s)	75, 138, 233, 298
CviQI	GTAC	2 cut(s)	120, 194
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
EcoT22I	ATGCAT	1 cut(s)	51
FaeI	CATG	1 cut(s)	112
FatI	CATG	1 cut(s)	108
FauI	CCCGC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	2 cut(s)	76, 98
Hin1II	CATG	1 cut(s)	112
HinfI	GANTC	2 cut(s)	26, 335
HpaII	CCGG	2 cut(s)	76, 98
HphI	GGTGA	2 cut(s)	112, 172
Hpy166II	GTNNAC	1 cut(s)	19
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	65
HpyCH4V	TGCA	2 cut(s)	49, 250
Hsp92II	CATG	1 cut(s)	112
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	1 cut(s)	312
LpnPI	CCDG	6 cut(s)	26, 89, 111, 120, 280, 326
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	1 cut(s)	35
MboII	GAAGA	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	5 cut(s)	81, 145, 197, 202, 272
MnlI	CCTC	3 cut(s)	156, 216, 320
Mph1103I	ATGCAT	1 cut(s)	51
MroXI	GAANNNNTTC	1 cut(s)	334
MseI	TTAA	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	2 cut(s)	76, 98
NlaIII	CATG	1 cut(s)	112
NsiI	ATGCAT	1 cut(s)	51
NspI	RCATGY	1 cut(s)	112
PciI	ACATGT	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	26, 335
PkrI	GCNGC	1 cut(s)	232
PscI	ACATGT	1 cut(s)	108
RsaI	GTAC	2 cut(s)	121, 195
RsaNI	GTAC	2 cut(s)	120, 194
RseI	CAYNNNNRTG	1 cut(s)	54
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	2 cut(s)	157, 345
SfaNI	GCATC	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	5 cut(s)	81, 145, 197, 202, 272
SsiI	CCGC	3 cut(s)	226, 230, 281
SspMI	CTAG	1 cut(s)	35
TaqI	TCGA	1 cut(s)	349
TasI	AATT	5 cut(s)	81, 145, 197, 202, 272
TatI	WGTACW	2 cut(s)	119, 193
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	26, 335
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TscAI	CASTG	1 cut(s)	36
TspDTI	ATGAA	3 cut(s)	17, 84, 105
TspRI	CASTG	1 cut(s)	36
XapI	RAATTY	2 cut(s)	81, 272
XceI	RCATGY	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	334
XspI	CTAG	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.