Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Forward (+)

4270441 .. 4272723

Gene Structure 2283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36228

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGTCATTTCTGCTTGTGGATTCATGCTTATATCGAAAAAAAAAAAAACACGAAATTAACTGTGACATGTGGCTCGGCACAGCTTTAGTTGACATGTTTGCTAGATGTGGTGACCTTCAAAGTGCAATGAAGGTGTTTGATAACATGGCAAGAAGAGATGTTTCTGCTTGGACAGCAGCCATTGGAGCAATGACCATGCAAGGAAATGGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

71

Amino Acids

7.98

Weight (kDa)

7.72

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflIII	ACRYGT	2 cut(s)	66, 93
AgsI	TTSAA	1 cut(s)	119
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
ApeKI	GCWGC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	102
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bse3DI	GCAATG	2 cut(s)	132, 195
BseMI	GCAATG	2 cut(s)	132, 195
BseXI	GCAGC	1 cut(s)	188
BsrDI	GCAATG	2 cut(s)	132, 195
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	148
BstEII	GGTNACC	1 cut(s)	110
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 185
BstNSI	RCATGY	2 cut(s)	70, 97
BstPI	GGTNACC	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	188
CviAII	CATG	5 cut(s)	24, 67, 94, 145, 196
CviJI	RGCY	3 cut(s)	73, 83, 179
CviKI_1	RGCY	3 cut(s)	73, 83, 179
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco91I	GGTNACC	1 cut(s)	110
EcoO65I	GGTNACC	1 cut(s)	110
FaeI	CATG	5 cut(s)	27, 70, 97, 148, 199
FaiI	YATR	6 cut(s)	25, 31, 68, 95, 146, 197
FatI	CATG	5 cut(s)	23, 66, 93, 144, 195
Fnu4HI	GCNGC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	1 cut(s)	177
Hin1II	CATG	5 cut(s)	27, 70, 97, 148, 199
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	20
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	2 cut(s)	124, 125
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4V	TGCA	2 cut(s)	125, 199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 185
Hsp92II	CATG	5 cut(s)	27, 70, 97, 148, 199
LmnI	GCTCC	1 cut(s)	185
Lsp1109I	GCAGC	1 cut(s)	188
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	2 cut(s)	62, 110
MboII	GAAGA	1 cut(s)	165
MluCI	AATT	1 cut(s)	54
MseI	TTAA	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	173, 185
NlaIII	CATG	5 cut(s)	27, 70, 97, 148, 199
NmeAIII	GCCGAG	1 cut(s)	54
NmuCI	GTSAC	2 cut(s)	62, 110
NspI	RCATGY	2 cut(s)	70, 97
PciI	ACATGT	2 cut(s)	66, 93
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	178
PscI	ACATGT	2 cut(s)	66, 93
PspEI	GGTNACC	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	177
SetI	ASST	3 cut(s)	85, 117, 135
Sse9I	AATT	1 cut(s)	54
SspMI	CTAG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	62
TaqI	TCGA	1 cut(s)	34
TasI	AATT	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TseFI	GTSAC	2 cut(s)	62, 110
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	2 cut(s)	62, 110
TspDTI	ATGAA	2 cut(s)	12, 143
XceI	RCATGY	2 cut(s)	70, 97
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.