Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Forward (+)

28508346 .. 28509218

Gene Structure 873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44727

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCCAAAGGAGGATGTTTCTTTGTTTTTCGAGATGGTGGCTGCCGGTGTTAAGCCAAATTCGGATGTTGCGTTGAGTGAGAGAATGTGTGCTTACATTGGGGAGTCTGGACTCAAGACTAATATGCTTATGGTGAATTCACTAGTTGATATGTATATGAAATGTGGAGCTACTGATGCCGCAAAGCGGTTTTTGATGAATGGACACTGTCTGCCATGTCAAATGCTACAACAGGGCCAAAGACCCGACAAGGTTACCATGTTGTCTGCAATTTCAGCTTGCGCACAACAAAGTGATTCTCTCTCAGGTAAGTGTTGCCATGGTTATGTTCTAAGGAATGGACTAGAAGGTTGGGATACCATCTGTGACGGCATGATTGACATATACATGAAGTGTGGCCAACAAGAGATGGCCTGCATAATTTTTGACAATATGTCGAATAAGACTGTAGTATCATGGAACTCCTTGATTTCTGGTTTCATAAGAAGCGGGGATGTGAAGTCAGCTTGGGAAATTTTCAATGAGATGCCTAAGAGTGATCTCGTCTCTTGGAACACTATGATTGGTGCTCTGGTCCAAGAGAGCAAGTTTGAGGAAGCAATTGAACTTTTCTGGGTGATGCAGACTGAGGGAATAAAAGGAGATAGGGTGACCATGGTGGAGGTTGCATCTGCCTGCAGATATTTAGGAGCTCTTGATCTTGCAAAGTGGACTCATGCTTATATTGAAAAAAAAAAAAAATCAACTGTGATATGCGGCTTGGGACAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

257

Amino Acids

28.46

Weight (kDa)

5.49

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	149 - 179	2.9e-09	PPR repeat family
PPR_1	PF12854	149 - 176	9.9e-07	PPR repeat
PPR	PF01535	151 - 180	2.5e-08	PPR repeat
PPR_2	PF13041	180 - 219	4.4e-08	PPR repeat family
PPR	PF01535	182 - 212	2.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	283
AciI	CCGC	4 cut(s)	180, 187, 489, 756
AcoI	YGGCCR	1 cut(s)	397
AcsI	RAATTY	3 cut(s)	58, 136, 513
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	3 cut(s)	520, 605, 728
AhdI	GACNNNNNGTC	1 cut(s)	433
AhlI	ACTAGT	1 cut(s)	142
AluBI	AGCT	4 cut(s)	170, 278, 506, 692
AluI	AGCT	4 cut(s)	170, 278, 506, 692
Alw21I	GWGCWC	2 cut(s)	571, 694
Alw26I	GTCTC	1 cut(s)	550
AoxI	GGCC	3 cut(s)	235, 397, 411
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	3 cut(s)	58, 136, 513
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	2 cut(s)	235, 574
AsuHPI	GGTGA	3 cut(s)	145, 628, 661
AvaII	GGWCC	1 cut(s)	574
BaeI	ACNNNNGTAYC	2 cut(s)	435, 468
BalI	TGGCCA	1 cut(s)	399
BanII	GRGCYC	1 cut(s)	694
Bbv12I	GWGCWC	2 cut(s)	571, 694
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	3 cut(s)	28, 368, 403
BceAI	ACGGC	1 cut(s)	385
BciVI	GTATCC	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	550
BcuI	ACTAGT	1 cut(s)	142
BfaI	CTAG	2 cut(s)	143, 344
BfmI	CTRYAG	2 cut(s)	447, 676
BfuI	GTATCC	1 cut(s)	349
BisI	GCNGC	3 cut(s)	42, 180, 757
BlsI	GCNGC	3 cut(s)	43, 181, 758
Bme18I	GGWCC	1 cut(s)	574
BmeRI	GACNNNNNGTC	1 cut(s)	433
BmgT120I	GGNCC	2 cut(s)	235, 574
BmsI	GCATC	4 cut(s)	166, 516, 609, 677
BpuEI	CTTGAG	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	319, 654
BsaXI	ACNNNNNCTCC	2 cut(s)	633, 663
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	319, 654
BseGI	GGATG	3 cut(s)	19, 70, 499
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	318, 618
BseXI	GCAGC	1 cut(s)	28
BshFI	GGCC	3 cut(s)	237, 399, 413
BsiHKAI	GWGCWC	2 cut(s)	571, 694
BsiSI	CCGG	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	550
BsmBI	CGTCTC	1 cut(s)	550
BsnI	GGCC	3 cut(s)	237, 399, 413
Bsp1286I	GDGCHC	2 cut(s)	571, 694
Bsp143I	GATC	2 cut(s)	538, 697
Bsp19I	CCATGG	2 cut(s)	319, 654
BspACI	CCGC	4 cut(s)	180, 187, 489, 756
BspANI	GGCC	3 cut(s)	237, 399, 413
BspCNI	CTCAG	2 cut(s)	317, 619
BspMAI	CTGCAG	1 cut(s)	680
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	319, 654
BssMI	GATC	2 cut(s)	538, 697
BssT1I	CCWWGG	2 cut(s)	319, 654
Bst4CI	ACNGT	3 cut(s)	209, 448, 748
BstC8I	GCNNGC	3 cut(s)	280, 415, 676
BstDEI	CTNAG	5 cut(s)	304, 332, 531, 627, 771
BstDSI	CCRYGG	2 cut(s)	319, 654
BstEII	GGTNACC	2 cut(s)	253, 649
BstF5I	GGATG	3 cut(s)	19, 70, 499
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	2 cut(s)	541, 700
BstMAI	GTCTC	1 cut(s)	550
BstMBI	GATC	2 cut(s)	538, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 275
BstPI	GGTNACC	2 cut(s)	253, 649
BstSFI	CTRYAG	2 cut(s)	447, 676
BstV1I	GCAGC	1 cut(s)	28
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	3 cut(s)	237, 399, 413
BtgI	CCRYGG	2 cut(s)	319, 654
BtsCI	GGATG	3 cut(s)	19, 70, 499
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	3 cut(s)	280, 415, 676
CfoI	GCGC	1 cut(s)	284
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	235, 574
CviAII	CATG	8 cut(s)	216, 259, 320, 373, 388, 456, 655, 716
DdeI	CTNAG	5 cut(s)	304, 332, 531, 627, 771
DpnI	GATC	2 cut(s)	540, 699
DpnII	GATC	2 cut(s)	538, 697
DriI	GACNNNNNGTC	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	397
Eam1105I	GACNNNNNGTC	1 cut(s)	433
Ecl136II	GAGCTC	1 cut(s)	692
Eco130I	CCWWGG	2 cut(s)	319, 654
Eco24I	GRGCYC	1 cut(s)	694
Eco47I	GGWCC	1 cut(s)	574
Eco53kI	GAGCTC	1 cut(s)	692
Eco91I	GGTNACC	2 cut(s)	253, 649
EcoICRI	GAGCTC	1 cut(s)	692
EcoO65I	GGTNACC	2 cut(s)	253, 649
EcoRI	GAATTC	1 cut(s)	136
EcoT14I	CCWWGG	2 cut(s)	319, 654
EcoT38I	GRGCYC	1 cut(s)	694
ErhI	CCWWGG	2 cut(s)	319, 654
Esp3I	CGTCTC	1 cut(s)	550
FaeI	CATG	8 cut(s)	219, 262, 323, 376, 391, 459, 658, 719
FatI	CATG	8 cut(s)	215, 258, 319, 372, 387, 455, 654, 715
FauI	CCCGC	1 cut(s)	482
Fnu4HI	GCNGC	3 cut(s)	42, 180, 757
FokI	GGATG	3 cut(s)	26, 77, 506
FriOI	GRGCYC	1 cut(s)	694
Fsp4HI	GCNGC	3 cut(s)	42, 180, 757
FspBI	CTAG	2 cut(s)	143, 344
FspI	TGCGCA	1 cut(s)	283
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	3 cut(s)	42, 180, 757
HaeIII	GGCC	3 cut(s)	237, 399, 413
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	8 cut(s)	219, 262, 323, 376, 391, 459, 658, 719
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HinfI	GANTC	4 cut(s)	104, 111, 296, 712
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	3 cut(s)	145, 628, 661
Hpy166II	GTNNAC	1 cut(s)	711
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	4 cut(s)	31, 108, 115, 695
Hpy8I	GTNNAC	1 cut(s)	711
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	3 cut(s)	209, 448, 748
HpyCH4V	TGCA	6 cut(s)	269, 417, 622, 668, 678, 704
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 275
HpyF3I	CTNAG	5 cut(s)	304, 332, 531, 627, 771
Hsp92II	CATG	8 cut(s)	219, 262, 323, 376, 391, 459, 658, 719
HspAI	GCGC	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	538, 697
LmnI	GCTCC	2 cut(s)	167, 689
LpnPI	CCDG	9 cut(s)	58, 93, 218, 291, 427, 459, 557, 598, 688
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	4 cut(s)	166, 516, 609, 677
MaeI	CTAG	2 cut(s)	143, 344
MaeIII	GTNAC	3 cut(s)	253, 365, 649
MalI	GATC	2 cut(s)	540, 699
MboI	GATC	2 cut(s)	538, 697
MfeI	CAATTG	1 cut(s)	600
MhlI	GDGCHC	2 cut(s)	571, 694
MlsI	TGGCCA	1 cut(s)	399
MluCI	AATT	6 cut(s)	58, 136, 270, 420, 513, 600
MluNI	TGGCCA	1 cut(s)	399
MlyI	GAGTC	3 cut(s)	105, 113, 706
MnlI	CCTC	4 cut(s)	4, 586, 622, 655
Mox20I	TGGCCA	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	399
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	2 cut(s)	324, 386
Msp20I	TGGCCA	1 cut(s)	399
MspI	CCGG	1 cut(s)	45
MunI	CAATTG	1 cut(s)	600
MwoI	GCNNNNNNNGC	2 cut(s)	176, 275
NcoI	CCATGG	2 cut(s)	319, 654
NdeII	GATC	2 cut(s)	538, 697
NlaIII	CATG	8 cut(s)	219, 262, 323, 376, 391, 459, 658, 719
NmuCI	GTSAC	2 cut(s)	365, 649
NsbI	TGCGCA	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	296
PflFI	GACNNNGTC	1 cut(s)	207
PkrI	GCNGC	3 cut(s)	43, 181, 758
PleI	GAGTC	3 cut(s)	105, 112, 706
PpsI	GAGTC	3 cut(s)	105, 112, 706
Psp124BI	GAGCTC	1 cut(s)	694
PspEI	GGTNACC	2 cut(s)	253, 649
PspPI	GGNCC	2 cut(s)	235, 574
PstI	CTGCAG	1 cut(s)	680
PsyI	GACNNNGTC	1 cut(s)	207
RseI	CAYNNNNRTG	2 cut(s)	324, 386
SacI	GAGCTC	1 cut(s)	694
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	3 cut(s)	42, 180, 757
Sau3AI	GATC	2 cut(s)	538, 697
Sau96I	GGNCC	2 cut(s)	235, 574
SchI	GAGTC	3 cut(s)	105, 113, 706
SduI	GDGCHC	2 cut(s)	571, 694
SetI	ASST	8 cut(s)	172, 255, 280, 310, 352, 508, 666, 694
SfaNI	GCATC	4 cut(s)	166, 516, 609, 677
SfcI	CTRYAG	2 cut(s)	447, 676
SinI	GGWCC	1 cut(s)	574
SmiMI	CAYNNNNRTG	2 cut(s)	324, 386
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SpeI	ACTAGT	1 cut(s)	142
Sse9I	AATT	6 cut(s)	58, 136, 270, 420, 513, 600
SsiI	CCGC	4 cut(s)	180, 187, 489, 756
SspMI	CTAG	2 cut(s)	143, 344
SstI	GAGCTC	1 cut(s)	694
StyI	CCWWGG	2 cut(s)	319, 654
TaaI	ACNGT	3 cut(s)	209, 448, 748
TaqI	TCGA	2 cut(s)	30, 437
TasI	AATT	6 cut(s)	58, 136, 270, 420, 513, 600
TauI	GCSGC	2 cut(s)	182, 759
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	212
TseFI	GTSAC	2 cut(s)	365, 649
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	2 cut(s)	365, 649
TspDTI	ATGAA	4 cut(s)	173, 212, 404, 469
TspRI	CASTG	1 cut(s)	212
Tth111I	GACNNNGTC	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	574
XapI	RAATTY	3 cut(s)	58, 136, 513
XspI	CTAG	2 cut(s)	143, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.