Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Reverse (-)

2401646 .. 2402664

Gene Structure 1019 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36058

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGGTGAAATGCTACAACAGGGCTTAAGACCCGACAAGGTTATGTGCCATATCAGCTTTTGCCAACTAAGTGATTCTCTCTCTGGAAAGTGTTCCCATGGTTATGTTCTAAGGAATGGGCTAGAAGGTTGGGATACGATTTGCAATGCCATGATTGACATGTACAAGAAGTGCAGCCAACCAGAAATGGCCTGCATAATTTTTGACAATATGTCGAATAAGACTGTACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

77

Amino Acids

8.67

Weight (kDa)

6.01

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	164, 228
AflII	CTTAAG	1 cut(s)	25
AflIII	ACRYGT	1 cut(s)	159
AhdI	GACNNNNNGTC	1 cut(s)	211
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	186
BciVI	GTATCC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	122
BfrI	CTTAAG	1 cut(s)	25
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
BmeRI	GACNNNNNGTC	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	193
BshFI	GGCC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	191
Bsp1407I	TGTACA	1 cut(s)	162
Bsp19I	CCATGG	1 cut(s)	97
BspANI	GGCC	1 cut(s)	191
BspTI	CTTAAG	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	151
BsrGI	TGTACA	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	226
BstAFI	CTTAAG	1 cut(s)	25
BstAUI	TGTACA	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	2 cut(s)	68, 110
BstDSI	CCRYGG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNSI	RCATGY	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	193
Csp6I	GTAC	2 cut(s)	163, 227
CviAII	CATG	3 cut(s)	98, 151, 160
CviJI	RGCY	5 cut(s)	24, 57, 121, 177, 191
CviKI_1	RGCY	5 cut(s)	24, 57, 121, 177, 191
CviQI	GTAC	2 cut(s)	163, 227
DdeI	CTNAG	2 cut(s)	68, 110
DriI	GACNNNNNGTC	1 cut(s)	211
Eam1105I	GACNNNNNGTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	3 cut(s)	101, 154, 163
FaiI	YATR	9 cut(s)	44, 51, 99, 105, 152, 161, 197, 212, 232
FatI	CATG	3 cut(s)	97, 150, 159
Fnu4HI	GCNGC	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	191
Hin1II	CATG	3 cut(s)	101, 154, 163
HinfI	GANTC	1 cut(s)	74
HphI	GGTGA	1 cut(s)	17
Hpy188III	TCNNGA	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	3 cut(s)	144, 174, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	2 cut(s)	68, 110
Hsp92II	CATG	3 cut(s)	101, 154, 163
LpnPI	CCDG	4 cut(s)	5, 69, 195, 205
Lsp1109I	GCAGC	1 cut(s)	186
MaeI	CTAG	1 cut(s)	122
MluCI	AATT	1 cut(s)	198
MroXI	GAANNNNTTC	1 cut(s)	91
MseI	TTAA	1 cut(s)	26
MslI	CAYNNNNRTG	1 cut(s)	102
MspCI	CTTAAG	1 cut(s)	25
MwoI	GCNNNNNNNGC	1 cut(s)	54
NcoI	CCATGG	1 cut(s)	97
NlaIII	CATG	3 cut(s)	101, 154, 163
NspI	RCATGY	1 cut(s)	163
PciI	ACATGT	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	176
PscI	ACATGT	1 cut(s)	159
RsaI	GTAC	2 cut(s)	164, 228
RsaNI	GTAC	2 cut(s)	163, 227
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	1 cut(s)	175
SetI	ASST	3 cut(s)	42, 59, 130
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	1 cut(s)	198
SspMI	CTAG	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	1 cut(s)	215
TasI	AATT	1 cut(s)	198
TatI	WGTACW	2 cut(s)	162, 226
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseI	GCWGC	1 cut(s)	174
Vha464I	CTTAAG	1 cut(s)	25
XceI	RCATGY	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	91
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.