Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Reverse (-)

2166533 .. 2166724

Gene Structure 192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36012

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGATTGACATGTACATGAAGTGTAGCCAAGAAGAGATGGCCTGCATAATTTTTGACAATATGCCGAATAAGACTGCAGTATCATGGAACTCGTTGATTTCTGGTTTCATCAGAAGTGGTGATGTGAAGTCAGCTTGGAAAGTGTTCAATGAGATGCCAAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

55

Amino Acids

6.31

Weight (kDa)

6.06

Isoelectric Point (pI)

75.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	25 - 54	3.7e-10	PPR repeat family
PPR_1	PF12854	25 - 52	7e-08	PPR repeat
PPR	PF01535	27 - 54	3.4e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	14
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	148
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
AoxI	GGCC	1 cut(s)	39
Asp700I	GAANNNNTTC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	131
BaeI	ACNNNNGTAYC	2 cut(s)	63, 96
BccI	CCATC	1 cut(s)	31
BfmI	CTRYAG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	144
BshFI	GGCC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	41
Bsp1407I	TGTACA	1 cut(s)	12
BspANI	GGCC	1 cut(s)	41
BspMAI	CTGCAG	1 cut(s)	79
BsrGI	TGTACA	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	27
BstAUI	TGTACA	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	41
Cac8I	GCNNGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	3 cut(s)	10, 16, 84
CviJI	RGCY	3 cut(s)	27, 41, 134
CviKI_1	RGCY	3 cut(s)	27, 41, 134
CviQI	GTAC	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
FaeI	CATG	3 cut(s)	13, 19, 87
FaiI	YATR	5 cut(s)	11, 17, 47, 62, 85
FatI	CATG	3 cut(s)	9, 15, 83
FspEI	CC	8 cut(s)	23, 41, 55, 70, 78, 87, 102, 121
HaeIII	GGCC	1 cut(s)	41
Hin1II	CATG	3 cut(s)	13, 19, 87
HphI	GGTGA	1 cut(s)	131
Hpy188I	TCNGA	1 cut(s)	113
HpyCH4V	TGCA	2 cut(s)	45, 77
Hsp92II	CATG	3 cut(s)	13, 19, 87
LpnPI	CCDG	2 cut(s)	55, 87
LweI	GCATC	1 cut(s)	144
MboII	GAAGA	1 cut(s)	44
MluCI	AATT	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	14
NlaIII	CATG	3 cut(s)	13, 19, 87
NspI	RCATGY	1 cut(s)	13
PciI	ACATGT	1 cut(s)	9
PdmI	GAANNNNTTC	1 cut(s)	143
PscI	ACATGT	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	79
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	14
SetI	ASST	1 cut(s)	136
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	1 cut(s)	75
SgeI	CNNG	8 cut(s)	22, 28, 41, 54, 96, 103, 114, 147
SmiMI	CAYNNNNRTG	1 cut(s)	14
Sse9I	AATT	1 cut(s)	48
TasI	AATT	1 cut(s)	48
TatI	WGTACW	1 cut(s)	12
TspDTI	ATGAA	2 cut(s)	32, 97
XceI	RCATGY	1 cut(s)	13
XmnI	GAANNNNTTC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.