Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040950.1

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 151

Gene Structure 150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040950.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

atggaaggaaatgaggagcgagctctagagctttttgatgacatgcttaagcaagcggtgaaaccagatgaagtagtctttgtggcagtaccagcagtgtgtagccatgttggtcttccaggaacaagggcggaacgttttcatgtcaac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

50

Amino Acids

5.55

Weight (kDa)

4.86

Isoelectric Point (pI)

24.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	56, 131
AclI	AACGTT	1 cut(s)	136
AfaI	GTAC	1 cut(s)	90
AflII	CTTAAG	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	2 cut(s)	23, 31
AluI	AGCT	2 cut(s)	23, 31
Alw21I	GWGCWC	1 cut(s)	25
Asp700I	GAANNNNTTC	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	25
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	120
BfaI	CTAG	1 cut(s)	26
BfrI	CTTAAG	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	120
BpiI	GAAGAC	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	25
BspACI	CCGC	2 cut(s)	56, 131
BspTI	CTTAAG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	120
BstAFI	CTTAAG	1 cut(s)	47
BstC8I	GCNNGC	2 cut(s)	21, 54
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	120
BstNSI	RCATGY	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	107
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	2 cut(s)	21, 54
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	3 cut(s)	43, 107, 143
CviJI	RGCY	3 cut(s)	23, 31, 105
CviKI_1	RGCY	3 cut(s)	23, 31, 105
CviQI	GTAC	1 cut(s)	89
EciI	GGCGGA	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	25
FaeI	CATG	3 cut(s)	46, 110, 146
FaiI	YATR	3 cut(s)	44, 108, 144
FatI	CATG	3 cut(s)	42, 106, 142
FriOI	GRGCYC	1 cut(s)	25
FspBI	CTAG	1 cut(s)	26
Hin1II	CATG	3 cut(s)	46, 110, 146
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	3 cut(s)	46, 110, 146
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	4 cut(s)	78, 105, 105, 132
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	136
MboII	GAAGA	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	25
MnlI	CCTC	1 cut(s)	7
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	1 cut(s)	48
MspCI	CTTAAG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	92
NlaIII	CATG	3 cut(s)	46, 110, 146
NspI	RCATGY	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	138
PfoI	TCCNGGA	1 cut(s)	118
Psp124BI	GAGCTC	1 cut(s)	25
Psp1406I	AACGTT	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	3 cut(s)	25, 33, 139
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SsiI	CCGC	2 cut(s)	56, 131
SspMI	CTAG	1 cut(s)	26
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	118
TaiI	ACGT	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	102
TspDTI	ATGAA	2 cut(s)	84, 131
TspRI	CASTG	1 cut(s)	102
Vha464I	CTTAAG	1 cut(s)	47
XbaI	TCTAGA	1 cut(s)	25
XceI	RCATGY	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.