Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Reverse (-)

18654625 .. 18655031

Gene Structure 407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55848

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTTGGAGGTATCTGCCAAAGGAGGCTGTTTCTTTGTTTTTCCGAGATGGTGGCTAAGCACAATTCGGTGACTCTGGTGTGTGTCATTTCTGCTTACGCAAAGTTGAAGGATGAGCGCTTAACTTGGGAGTCTGAACTGAAGAGTAATATGCTTATGTTTGAGGAAGCAATTGAACTTTTCCGGGTGATGCGGACTGAGGGAATAAAAGGAGATAGGTTGACCATGGTGGAGGTTGCATCTACCTGCGGATATCTAGGAGCTCTTGATCTTGCAAAGTTGACTCCTGCTTATATCCAGAATAAAAAACACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

105

Amino Acids

11.91

Weight (kDa)

8.39

Isoelectric Point (pI)

28.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	254
AciI	CCGC	2 cut(s)	193, 249
AcuI	CTGAAG	1 cut(s)	161
AfeI	AGCGCT	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	109, 176
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
Alw21I	GWGCWC	1 cut(s)	265
Aor51HI	AGCGCT	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	120
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	82, 199
BanII	GRGCYC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	265
BccI	CCATC	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	185
BfaI	CTAG	1 cut(s)	257
BfoI	RGCGCY	1 cut(s)	121
BfuAI	ACCTGC	1 cut(s)	254
BlpI	GCTNAGC	1 cut(s)	57
Bme1390I	CCNGG	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	2 cut(s)	180, 248
Bpu1102I	GCTNAGC	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	268
Bsp1720I	GCTNAGC	1 cut(s)	57
Bsp19I	CCATGG	1 cut(s)	225
BspACI	CCGC	2 cut(s)	193, 249
BspCNI	CTCAG	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	268
BssT1I	CCWWGG	1 cut(s)	225
Bst6I	CTCTTC	1 cut(s)	137
BstDEI	CTNAG	2 cut(s)	57, 198
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	118
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	118
BveI	ACCTGC	1 cut(s)	254
CfoI	GCGC	1 cut(s)	120
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	3 cut(s)	28, 56, 263
CviKI_1	RGCY	3 cut(s)	28, 56, 263
DdeI	CTNAG	2 cut(s)	57, 198
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Ecl136II	GAGCTC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	265
Eco32I	GATATC	1 cut(s)	254
Eco47III	AGCGCT	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	263
EcoRV	GATATC	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	1 cut(s)	229
FaiI	YATR	4 cut(s)	152, 158, 227, 294
FatI	CATG	1 cut(s)	225
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	265
FspBI	CTAG	1 cut(s)	257
GlaI	GCGC	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	121
HapII	CCGG	1 cut(s)	184
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	229
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	2 cut(s)	222, 282
HindII	GTYRAC	2 cut(s)	222, 282
HinfI	GANTC	3 cut(s)	73, 131, 283
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	2 cut(s)	82, 199
Hpy166II	GTNNAC	2 cut(s)	222, 282
Hpy188I	TCNGA	2 cut(s)	46, 136
Hpy188III	TCNNGA	2 cut(s)	266, 298
Hpy8I	GTNNAC	2 cut(s)	222, 282
HpyAV	CCTTC	1 cut(s)	103
HpyCH4V	TGCA	2 cut(s)	239, 275
HpyF3I	CTNAG	2 cut(s)	57, 198
Hsp92II	CATG	1 cut(s)	229
HspAI	GCGC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	5 cut(s)	62, 197, 259, 300, 311
LweI	GCATC	2 cut(s)	180, 248
MaeI	CTAG	1 cut(s)	257
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	1 cut(s)	154
MfeI	CAATTG	2 cut(s)	171, 313
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	3 cut(s)	64, 171, 313
MlyI	GAGTC	3 cut(s)	67, 140, 277
MnlI	CCTC	4 cut(s)	18, 157, 193, 226
MseI	TTAA	1 cut(s)	122
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	185
MunI	CAATTG	2 cut(s)	171, 313
NciI	CCSGG	1 cut(s)	185
NcoI	CCATGG	1 cut(s)	225
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	70
PleI	GAGTC	3 cut(s)	67, 139, 277
PpsI	GAGTC	3 cut(s)	67, 139, 277
Psp124BI	GAGCTC	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	122
Sau3AI	GATC	1 cut(s)	268
SchI	GAGTC	3 cut(s)	67, 140, 277
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	5 cut(s)	13, 221, 237, 248, 265
SfaNI	GCATC	2 cut(s)	180, 248
Sse9I	AATT	3 cut(s)	64, 171, 313
SsiI	CCGC	2 cut(s)	193, 249
SspMI	CTAG	1 cut(s)	257
SstI	GAGCTC	1 cut(s)	265
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	225
TasI	AATT	3 cut(s)	64, 171, 313
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.