Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006648.1

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Forward (+)

48648 .. 48938

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006648.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgcggctcgtgacagccttagttgacgtgtttgctagatgtggtgaccctcatagtgtattgaaggtgttcaataacatggcaagaagagatgtttctgcttcgactgcagccattggagcaatggccattatgggaaatggggaacgagctgtagagcttttcgatgacaagcaaggggtgaaaccagatgaagtagtctttatggcagtactaacagggtgcagccatgttggtcttttggaacaagggcggaacattttcaagtcaatgcagtcggtccatggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

96

Amino Acids

10.32

Weight (kDa)

6.82

Isoelectric Point (pI)

18.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	4, 253
AcoI	YGGCCR	1 cut(s)	126
AfaI	GTAC	1 cut(s)	213
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	64, 73, 265
AjiI	CACGTC	1 cut(s)	28
AluBI	AGCT	2 cut(s)	152, 160
AluI	AGCT	2 cut(s)	152, 160
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	110, 225
Asp700I	GAANNNNTTC	2 cut(s)	68, 260
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	56, 193
AvaII	GGWCC	1 cut(s)	280
BalI	TGGCCA	1 cut(s)	128
BauI	CACGAG	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	122, 237
BfaI	CTAG	2 cut(s)	36, 289
BfmI	CTRYAG	2 cut(s)	108, 153
BisI	GCNGC	3 cut(s)	5, 111, 226
BlsI	GCNGC	3 cut(s)	6, 112, 227
BmcAI	AGTACT	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	280
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	122, 237
BsgI	GTGCAG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	128
Bsp19I	CCATGG	1 cut(s)	283
BspACI	CCGC	2 cut(s)	4, 253
BspANI	GGCC	1 cut(s)	128
BspMAI	CTGCAG	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	283
BssSI	CACGAG	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	283
Bst2BI	CACGAG	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	19
BstDSI	CCRYGG	1 cut(s)	283
BstEII	GGTNACC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 119
BstPI	GGTNACC	1 cut(s)	44
BstSFI	CTRYAG	2 cut(s)	108, 153
BstV1I	GCAGC	2 cut(s)	122, 237
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	283
BtrI	CACGTC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	3 cut(s)	79, 230, 284
CviJI	RGCY	8 cut(s)	7, 17, 113, 128, 152, 160, 228, 288
CviKI_1	RGCY	8 cut(s)	7, 17, 113, 128, 152, 160, 228, 288
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
EciI	GGCGGA	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	280
Eco91I	GGTNACC	1 cut(s)	44
EcoO65I	GGTNACC	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	3 cut(s)	82, 233, 287
FaiI	YATR	6 cut(s)	54, 80, 134, 206, 231, 285
FatI	CATG	3 cut(s)	78, 229, 283
Fnu4HI	GCNGC	3 cut(s)	5, 111, 226
Fsp4HI	GCNGC	3 cut(s)	5, 111, 226
FspBI	CTAG	2 cut(s)	36, 289
GluI	GCNGC	3 cut(s)	5, 111, 226
HaeIII	GGCC	1 cut(s)	128
Hin1II	CATG	3 cut(s)	82, 233, 287
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HphI	GGTGA	2 cut(s)	56, 193
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	10
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	3 cut(s)	110, 225, 274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 119
HpyF3I	CTNAG	1 cut(s)	19
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	82, 233, 287
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	2 cut(s)	201, 204
Lsp1109I	GCAGC	2 cut(s)	122, 237
MaeI	CTAG	2 cut(s)	36, 289
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	10, 44
MboII	GAAGA	1 cut(s)	99
MlsI	TGGCCA	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	128
MnlI	CCTC	1 cut(s)	60
Mox20I	TGGCCA	1 cut(s)	128
MroXI	GAANNNNTTC	2 cut(s)	68, 260
MscI	TGGCCA	1 cut(s)	128
Msp20I	TGGCCA	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	107, 119
NcoI	CCATGG	1 cut(s)	283
NlaIII	CATG	3 cut(s)	82, 233, 287
NmuCI	GTSAC	2 cut(s)	10, 44
PdmI	GAANNNNTTC	2 cut(s)	68, 260
PkrI	GCNGC	3 cut(s)	6, 112, 227
PspEI	GGTNACC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SatI	GCNGC	3 cut(s)	5, 111, 226
Sau96I	GGNCC	1 cut(s)	280
ScaI	AGTACT	1 cut(s)	213
SetI	ASST	4 cut(s)	30, 69, 154, 162
SfcI	CTRYAG	2 cut(s)	108, 153
SinI	GGWCC	1 cut(s)	280
SsiI	CCGC	2 cut(s)	4, 253
SspMI	CTAG	2 cut(s)	36, 289
StyI	CCWWGG	1 cut(s)	283
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	104, 165
TaqII	GACCGA	1 cut(s)	268
TatI	WGTACW	1 cut(s)	211
TauI	GCSGC	1 cut(s)	7
TseFI	GTSAC	2 cut(s)	10, 44
TseI	GCWGC	2 cut(s)	110, 225
Tsp45I	GTSAC	2 cut(s)	10, 44
TspDTI	ATGAA	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmnI	GAANNNNTTC	2 cut(s)	68, 260
XspI	CTAG	2 cut(s)	36, 289
ZrmI	AGTACT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.