Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Forward (+)

63666558 .. 63667042

Gene Structure 485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010159

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTGGAGGTTGCATCTGGCTGCGGATATCTAGGAGCTCTTGATCTTGCAAGATGTGGCGACCCTCAAAGTGCAGTGAAGGTGTTCGATAACATGGCAAGAAGATATGTTTCTGCTTGGACAGCAGCCATTGGAGCAATGGTTATGCAAGGAAATGGGGAGCGAGCTCTAGAGCTTTTTGATGACATCCTTGAGCAAGGGGTGAAACCAGATGAAGTAGTCTTTGTGGCAGTACTAACAGCATGCAGCCATATTAGTCTTTTGGAACAAGGACGGAAGATTTTCATGTCAATGCAATCGGTCCATGGCATTTCCCCTCATATTGTTCATTACGGTTGCATGGTTGATCTACTTGGCCGAGCAGGGTGCTTGGAAGAAGCTGTTGATCTGGTAAAGAGCATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

136

Amino Acids

14.55

Weight (kDa)

4.96

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	37 - 83	2.1e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	24
AcoI	YGGCCR	1 cut(s)	355
AfaI	GTAC	1 cut(s)	234
AluBI	AGCT	4 cut(s)	38, 167, 175, 380
AluI	AGCT	4 cut(s)	38, 167, 175, 380
Alw21I	GWGCWC	2 cut(s)	40, 169
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	3 cut(s)	21, 125, 246
Asp700I	GAANNNNTTC	2 cut(s)	83, 281
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	301
BanII	GRGCYC	2 cut(s)	40, 169
Bbv12I	GWGCWC	2 cut(s)	40, 169
BbvI	GCAGC	3 cut(s)	8, 137, 258
BcgI	CGANNNNNNTGC	2 cut(s)	348, 382
BfaI	CTAG	2 cut(s)	32, 170
BisI	GCNGC	3 cut(s)	22, 126, 247
BlsI	GCNGC	3 cut(s)	23, 127, 248
BmcAI	AGTACT	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmsI	GCATC	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	304
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bse3DI	GCAATG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	144
BseXI	GCAGC	3 cut(s)	8, 137, 258
BsgI	GTGCAG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	357
BsiHKAI	GWGCWC	2 cut(s)	40, 169
BsnI	GGCC	1 cut(s)	357
Bsp1286I	GDGCHC	2 cut(s)	40, 169
Bsp143I	GATC	3 cut(s)	43, 346, 385
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	3 cut(s)	43, 346, 385
BssT1I	CCWWGG	1 cut(s)	304
Bst4CI	ACNGT	1 cut(s)	335
BstC8I	GCNNGC	2 cut(s)	165, 244
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	3 cut(s)	46, 349, 388
BstMBI	GATC	3 cut(s)	43, 346, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 134
BstNSI	RCATGY	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	8, 137, 258
BsuRI	GGCC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	186
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	2 cut(s)	165, 244
Cfr13I	GGNCC	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	6 cut(s)	94, 243, 286, 305, 340, 400
CviJI	RGCY	8 cut(s)	21, 38, 128, 167, 175, 249, 357, 380
CviKI_1	RGCY	8 cut(s)	21, 38, 128, 167, 175, 249, 357, 380
CviQI	GTAC	1 cut(s)	233
DpnI	GATC	3 cut(s)	45, 348, 387
DpnII	GATC	3 cut(s)	43, 346, 385
EaeI	YGGCCR	1 cut(s)	355
Ecl136II	GAGCTC	2 cut(s)	38, 167
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	2 cut(s)	40, 169
Eco32I	GATATC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	301
Eco53kI	GAGCTC	2 cut(s)	38, 167
EcoICRI	GAGCTC	2 cut(s)	38, 167
EcoRV	GATATC	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	304
EcoT38I	GRGCYC	2 cut(s)	40, 169
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	6 cut(s)	97, 246, 289, 308, 343, 403
FatI	CATG	6 cut(s)	93, 242, 285, 304, 339, 399
Fnu4HI	GCNGC	3 cut(s)	22, 126, 247
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	2 cut(s)	40, 169
Fsp4HI	GCNGC	3 cut(s)	22, 126, 247
FspBI	CTAG	2 cut(s)	32, 170
GluI	GCNGC	3 cut(s)	22, 126, 247
HaeIII	GGCC	1 cut(s)	357
Hin1II	CATG	6 cut(s)	97, 246, 289, 308, 343, 403
HphI	GGTGA	1 cut(s)	214
Hpy188III	TCNNGA	2 cut(s)	41, 170
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4V	TGCA	7 cut(s)	14, 50, 74, 148, 246, 295, 339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 134
Hsp92II	CATG	6 cut(s)	97, 246, 289, 308, 343, 403
Kzo9I	GATC	3 cut(s)	43, 346, 385
LmnI	GCTCC	3 cut(s)	35, 134, 160
LpnPI	CCDG	4 cut(s)	3, 222, 348, 374
Lsp1109I	GCAGC	3 cut(s)	8, 137, 258
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	2 cut(s)	32, 170
MalI	GATC	3 cut(s)	45, 348, 387
MboI	GATC	3 cut(s)	43, 346, 385
MboII	GAAGA	3 cut(s)	114, 289, 386
MhlI	GDGCHC	2 cut(s)	40, 169
MnlI	CCTC	2 cut(s)	75, 327
MroXI	GAANNNNTTC	2 cut(s)	83, 281
MslI	CAYNNNNRTG	1 cut(s)	290
MwoI	GCNNNNNNNGC	2 cut(s)	122, 134
NcoI	CCATGG	1 cut(s)	304
NdeII	GATC	3 cut(s)	43, 346, 385
NlaIII	CATG	6 cut(s)	97, 246, 289, 308, 343, 403
NmeAIII	GCCGAG	1 cut(s)	383
NspI	RCATGY	1 cut(s)	246
PaeI	GCATGC	1 cut(s)	246
PdmI	GAANNNNTTC	2 cut(s)	83, 281
PkrI	GCNGC	3 cut(s)	23, 127, 248
Psp124BI	GAGCTC	2 cut(s)	40, 169
PspPI	GGNCC	1 cut(s)	301
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
RseI	CAYNNNNRTG	1 cut(s)	290
SacI	GAGCTC	2 cut(s)	40, 169
SatI	GCNGC	3 cut(s)	22, 126, 247
Sau3AI	GATC	3 cut(s)	43, 346, 385
Sau96I	GGNCC	1 cut(s)	301
ScaI	AGTACT	1 cut(s)	234
SduI	GDGCHC	2 cut(s)	40, 169
SetI	ASST	6 cut(s)	12, 40, 84, 169, 177, 382
SfaNI	GCATC	1 cut(s)	23
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SphI	GCATGC	1 cut(s)	246
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	2 cut(s)	32, 170
SstI	GAGCTC	2 cut(s)	40, 169
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	335
TaqI	TCGA	1 cut(s)	87
TaqII	GACCGA	1 cut(s)	289
TatI	WGTACW	1 cut(s)	232
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	3 cut(s)	21, 125, 246
TspDTI	ATGAA	3 cut(s)	228, 274, 317
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	301
XbaI	TCTAGA	1 cut(s)	169
XceI	RCATGY	1 cut(s)	246
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XmnI	GAANNNNTTC	2 cut(s)	83, 281
XspI	CTAG	2 cut(s)	32, 170
ZrmI	AGTACT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.