Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Forward (+)

4199218 .. 4200547

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36221

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCTTGAGAGAAATACTGGGTCGTGGACTAGTTCGATTTATGCTTATGGTGACTATGGGCCTAAAACCCGACAAGGTTGCCATTTTGTCTGCAATCTCAGCTTTCGCACAACTAAGCGATTCTCTCACTGGAAAGTATTGCATGTTTATGTTCTAAGGAATGGACTGGAAGGTTGTAATACGATTTGCAATGCTATGATTGACATGTACATGAACTGCGGCCAACAAAAGATGGCTTGCAGAGTTTTTGACAATATGTCGAATAGGACTGTAGTATCATGGAACTCATTGATTTCTGGTTTCATAAGAACTGGTCATGTGAAGTCAGCTTGGAAATGTTCAAGCAAGTTTGGGGAAGCAATTGAACTTTTGAGGGTGATGCAGACTGAGGGAATAAAAGGAGATAGGGTGACCATGGTGGAGGCTGCATCTGCCTGCGGTTATCTAGGAGCCCTTGATCTTGCAAAGTGGATTCATGCTTATATCGAGAAAAAAATGAAATTAACTGTGACATGTGGCTCGATACAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

177

Amino Acids

19.98

Weight (kDa)

9.28

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	219, 438
AcoI	YGGCCR	1 cut(s)	220
AfaI	GTAC	1 cut(s)	209
AflIII	ACRYGT	2 cut(s)	204, 512
AgsI	TTSAA	2 cut(s)	342, 365
AhdI	GACNNNNNGTC	1 cut(s)	256
AhlI	ACTAGT	1 cut(s)	29
AluBI	AGCT	3 cut(s)	102, 329, 529
AluI	AGCT	3 cut(s)	102, 329, 529
AoxI	GGCC	2 cut(s)	59, 220
ApeKI	GCWGC	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	59
AsuHPI	GGTGA	3 cut(s)	62, 388, 421
BaeI	ACNNNNGTAYC	2 cut(s)	258, 291
BanII	GRGCYC	1 cut(s)	454
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	1 cut(s)	226
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	2 cut(s)	30, 446
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	2 cut(s)	220, 426
BlsI	GCNGC	2 cut(s)	221, 427
BmeRI	GACNNNNNGTC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	451
BmrI	ACTGGG	1 cut(s)	27
BmsI	GCATC	2 cut(s)	369, 437
BmuI	ACTGGG	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	414
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bse1I	ACTGG	4 cut(s)	22, 134, 171, 316
Bse3DI	GCAATG	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	414
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	2 cut(s)	112, 378
BseNI	ACTGG	4 cut(s)	22, 134, 171, 316
BseXI	GCAGC	1 cut(s)	412
BshFI	GGCC	2 cut(s)	61, 222
BsnI	GGCC	2 cut(s)	61, 222
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp1407I	TGTACA	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	457
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	2 cut(s)	219, 438
BspANI	GGCC	2 cut(s)	61, 222
BspCNI	CTCAG	2 cut(s)	111, 379
BspLI	GGNNCC	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	196
BsrGI	TGTACA	1 cut(s)	207
BsrI	ACTGG	4 cut(s)	22, 134, 171, 316
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	1 cut(s)	457
BssT1I	CCWWGG	1 cut(s)	414
Bst4CI	ACNGT	2 cut(s)	271, 508
BstAUI	TGTACA	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	238, 436
BstDEI	CTNAG	4 cut(s)	98, 114, 155, 387
BstDSI	CCRYGG	1 cut(s)	414
BstEII	GGTNACC	1 cut(s)	409
BstKTI	GATC	1 cut(s)	460
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 431
BstNSI	RCATGY	3 cut(s)	146, 208, 516
BstPI	GGTNACC	1 cut(s)	409
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	412
BsuRI	GGCC	2 cut(s)	61, 222
BtgI	CCRYGG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	238, 436
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	8 cut(s)	143, 205, 211, 279, 317, 415, 476, 513
CviJI	RGCY	9 cut(s)	61, 102, 222, 236, 329, 425, 452, 519, 529
CviKI_1	RGCY	9 cut(s)	61, 102, 222, 236, 329, 425, 452, 519, 529
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	4 cut(s)	98, 114, 155, 387
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
DriI	GACNNNNNGTC	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	220
Eam1105I	GACNNNNNGTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	454
Eco91I	GGTNACC	1 cut(s)	409
EcoO65I	GGTNACC	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	8 cut(s)	146, 208, 214, 282, 320, 418, 479, 516
FatI	CATG	8 cut(s)	142, 204, 210, 278, 316, 414, 475, 512
Fnu4HI	GCNGC	2 cut(s)	220, 426
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	2 cut(s)	220, 426
FspBI	CTAG	2 cut(s)	30, 446
GluI	GCNGC	2 cut(s)	220, 426
HaeIII	GGCC	2 cut(s)	61, 222
Hin1II	CATG	8 cut(s)	146, 208, 214, 282, 320, 418, 479, 516
HinfI	GANTC	2 cut(s)	120, 472
HphI	GGTGA	3 cut(s)	62, 388, 421
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188III	TCNNGA	1 cut(s)	487
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	164
HpyCH4III	ACNGT	2 cut(s)	271, 508
HpyCH4V	TGCA	7 cut(s)	93, 142, 189, 240, 382, 428, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 431
HpyF3I	CTNAG	4 cut(s)	98, 114, 155, 387
Hsp92II	CATG	8 cut(s)	146, 208, 214, 282, 320, 418, 479, 516
Kzo9I	GATC	1 cut(s)	457
LmnI	GCTCC	1 cut(s)	449
LpnPI	CCDG	6 cut(s)	3, 115, 152, 282, 297, 448
Lsp1109I	GCAGC	1 cut(s)	412
LweI	GCATC	2 cut(s)	369, 437
MaeI	CTAG	2 cut(s)	30, 446
MaeIII	GTNAC	3 cut(s)	50, 409, 508
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MfeI	CAATTG	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	2 cut(s)	360, 500
MnlI	CCTC	3 cut(s)	366, 382, 415
MseI	TTAA	1 cut(s)	503
MslI	CAYNNNNRTG	2 cut(s)	147, 209
MunI	CAATTG	1 cut(s)	360
MwoI	GCNNNNNNNGC	2 cut(s)	99, 431
NcoI	CCATGG	1 cut(s)	414
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	8 cut(s)	146, 208, 214, 282, 320, 418, 479, 516
NlaIV	GGNNCC	1 cut(s)	451
NmuCI	GTSAC	3 cut(s)	50, 409, 508
NspI	RCATGY	3 cut(s)	146, 208, 516
PciI	ACATGT	2 cut(s)	204, 512
PfeI	GAWTC	2 cut(s)	120, 472
PkrI	GCNGC	2 cut(s)	221, 427
PscI	ACATGT	2 cut(s)	204, 512
PspEI	GGTNACC	1 cut(s)	409
PspN4I	GGNNCC	1 cut(s)	451
PspPI	GGNCC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	2 cut(s)	147, 209
SaqAI	TTAA	1 cut(s)	503
SatI	GCNGC	2 cut(s)	220, 426
Sau3AI	GATC	1 cut(s)	457
Sau96I	GGNCC	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	454
SetI	ASST	5 cut(s)	79, 104, 175, 331, 531
SfaNI	GCATC	2 cut(s)	369, 437
SfcI	CTRYAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	2 cut(s)	147, 209
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
SpeI	ACTAGT	1 cut(s)	29
Sse9I	AATT	2 cut(s)	360, 500
SsiI	CCGC	2 cut(s)	219, 438
SspMI	CTAG	2 cut(s)	30, 446
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	2 cut(s)	271, 508
TaqI	TCGA	4 cut(s)	35, 260, 486, 521
TasI	AATT	2 cut(s)	360, 500
TatI	WGTACW	1 cut(s)	207
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	2 cut(s)	120, 472
Tru1I	TTAA	1 cut(s)	503
Tru9I	TTAA	1 cut(s)	503
TscAI	CASTG	1 cut(s)	134
TseFI	GTSAC	3 cut(s)	50, 409, 508
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	3 cut(s)	50, 409, 508
TspDTI	ATGAA	4 cut(s)	227, 292, 464, 512
TspRI	CASTG	1 cut(s)	134
XceI	RCATGY	3 cut(s)	146, 208, 516
XspI	CTAG	2 cut(s)	30, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.