Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Reverse (-)

2401101 .. 2401643

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36057

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCAGACCGAGGGAATAAAAGGAGATACGGTGACCATGGTGGAGGTTGCATCTGCCTGCGGATATCTAGGAGCTATTGATCTTGCAAAGTGGACTCATGCTTATATTGGAAAAGATAAAATTAACTGTGACATGCGGCTCGGGACATCTTTAGTTGACATGTTTGCTAGATGTGGCAACCCTCAAAGTGCAATAAAGGTGTTCGATAACATGGCAAGAAGAGATGTTTCTGCTTGGACAGCAGCCATTGGAGCAATGGCCATGCAAGGAAATGGGGAGCGAGCTCTAGAGCTTTTCGATAACATGCATAAGCAAGGGGTGAAACCAGATGAAGTAGTCTTTGTGGCAGTACTAACAGCATGCAGCCATGCTGGTCTTTTGGAACAAGGACGGAACATTTTCACATCAATGCAATCAGTCCATGGCATTTCCTCTCATATTGTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

149

Amino Acids

16.09

Weight (kDa)

6.27

Isoelectric Point (pI)

29.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	74 - 122	1.2e-09	PPR repeat family
PPR_3	PF13812	75 - 121	4.9e-06	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	60, 136
AcoI	YGGCCR	1 cut(s)	258
AfaI	GTAC	1 cut(s)	351
AflIII	ACRYGT	1 cut(s)	159
AluBI	AGCT	3 cut(s)	74, 284, 292
AluI	AGCT	3 cut(s)	74, 284, 292
Alw21I	GWGCWC	1 cut(s)	286
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	2 cut(s)	242, 363
Asp700I	GAANNNNTTC	1 cut(s)	398
AsuHPI	GGTGA	2 cut(s)	43, 331
AvaI	CYCGRG	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	2 cut(s)	254, 375
BfaI	CTAG	3 cut(s)	68, 168, 287
BisI	GCNGC	3 cut(s)	137, 243, 364
BlsI	GCNGC	3 cut(s)	138, 244, 365
BmcAI	AGTACT	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	59
BsaJI	CCNNGG	3 cut(s)	9, 36, 421
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	3 cut(s)	9, 36, 421
BseMI	GCAATG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	254, 375
BshFI	GGCC	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	286
BsiHKCI	CYCGRG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	79
Bsp19I	CCATGG	2 cut(s)	36, 421
BspACI	CCGC	2 cut(s)	60, 136
BspANI	GGCC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	261
BssECI	CCNNGG	3 cut(s)	9, 36, 421
BssMI	GATC	1 cut(s)	79
BssT1I	CCWWGG	2 cut(s)	36, 421
Bst4CI	ACNGT	2 cut(s)	31, 128
Bst6I	CTCTTC	1 cut(s)	214
BstC8I	GCNNGC	3 cut(s)	58, 282, 361
BstDSI	CCRYGG	2 cut(s)	36, 421
BstEII	GGTNACC	1 cut(s)	31
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 251
BstNSI	RCATGY	4 cut(s)	136, 163, 307, 363
BstPI	GGTNACC	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	254, 375
BsuRI	GGCC	1 cut(s)	260
BtgI	CCRYGG	2 cut(s)	36, 421
Cac8I	GCNNGC	3 cut(s)	58, 282, 361
Csp6I	GTAC	1 cut(s)	350
CviJI	RGCY	7 cut(s)	74, 139, 245, 260, 284, 292, 366
CviKI_1	RGCY	7 cut(s)	74, 139, 245, 260, 284, 292, 366
CviQI	GTAC	1 cut(s)	350
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Ecl136II	GAGCTC	1 cut(s)	284
Eco130I	CCWWGG	2 cut(s)	36, 421
Eco24I	GRGCYC	1 cut(s)	286
Eco32I	GATATC	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	140
Eco91I	GGTNACC	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	284
EcoO65I	GGTNACC	1 cut(s)	31
EcoRV	GATATC	1 cut(s)	65
EcoT14I	CCWWGG	2 cut(s)	36, 421
EcoT22I	ATGCAT	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	2 cut(s)	36, 421
FaqI	GGGAC	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	137, 243, 364
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	3 cut(s)	137, 243, 364
FspBI	CTAG	3 cut(s)	68, 168, 287
GluI	GCNGC	3 cut(s)	137, 243, 364
HaeIII	GGCC	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	1 cut(s)	94
HphI	GGTGA	2 cut(s)	43, 331
Hpy166II	GTNNAC	2 cut(s)	93, 157
Hpy188III	TCNNGA	2 cut(s)	142, 287
Hpy8I	GTNNAC	2 cut(s)	93, 157
HpyCH4III	ACNGT	2 cut(s)	31, 128
HpyCH4V	TGCA	8 cut(s)	4, 50, 86, 191, 265, 307, 363, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 251
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	3 cut(s)	71, 251, 277
LpnPI	CCDG	3 cut(s)	70, 339, 357
Lsp1109I	GCAGC	2 cut(s)	254, 375
LweI	GCATC	1 cut(s)	59
MaeI	CTAG	3 cut(s)	68, 168, 287
MaeIII	GTNAC	2 cut(s)	31, 128
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	286
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	1 cut(s)	120
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	4 cut(s)	4, 37, 192, 442
Mox20I	TGGCCA	1 cut(s)	260
Mph1103I	ATGCAT	1 cut(s)	309
MroXI	GAANNNNTTC	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	2 cut(s)	123, 448
MslI	CAYNNNNRTG	1 cut(s)	407
Msp20I	TGGCCA	1 cut(s)	260
MwoI	GCNNNNNNNGC	2 cut(s)	239, 251
NcoI	CCATGG	2 cut(s)	36, 421
NdeII	GATC	1 cut(s)	79
NmuCI	GTSAC	2 cut(s)	31, 128
NsiI	ATGCAT	1 cut(s)	309
NspI	RCATGY	4 cut(s)	136, 163, 307, 363
PaeI	GCATGC	1 cut(s)	363
PciI	ACATGT	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	398
PkrI	GCNGC	3 cut(s)	138, 244, 365
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PscI	ACATGT	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	286
PspEI	GGTNACC	1 cut(s)	31
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	407
SacI	GAGCTC	1 cut(s)	286
SaqAI	TTAA	2 cut(s)	123, 448
SatI	GCNGC	3 cut(s)	137, 243, 364
Sau3AI	GATC	1 cut(s)	79
ScaI	AGTACT	1 cut(s)	351
SchI	GAGTC	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	5 cut(s)	48, 76, 201, 286, 294
SfaNI	GCATC	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	407
SphI	GCATGC	1 cut(s)	363
Sse9I	AATT	1 cut(s)	120
SsiI	CCGC	2 cut(s)	60, 136
SspMI	CTAG	3 cut(s)	68, 168, 287
SstI	GAGCTC	1 cut(s)	286
StyI	CCWWGG	2 cut(s)	36, 421
TaaI	ACNGT	2 cut(s)	31, 128
TaqI	TCGA	2 cut(s)	204, 297
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	120
TatI	WGTACW	1 cut(s)	349
TauI	GCSGC	1 cut(s)	139
Tru1I	TTAA	2 cut(s)	123, 448
Tru9I	TTAA	2 cut(s)	123, 448
TseFI	GTSAC	2 cut(s)	31, 128
TseI	GCWGC	2 cut(s)	242, 363
Tsp45I	GTSAC	2 cut(s)	31, 128
TspDTI	ATGAA	2 cut(s)	345, 434
TspGWI	ACGGA	1 cut(s)	406
XbaI	TCTAGA	1 cut(s)	286
XceI	RCATGY	4 cut(s)	136, 163, 307, 363
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	3 cut(s)	68, 168, 287
ZrmI	AGTACT	1 cut(s)	351
Zsp2I	ATGCAT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.