Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018886.1

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 309

Gene Structure 308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018886.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 308 bp

atgagatgccaaagagttgatcttgtctcttggaacactatccaagtgagcaagtttggggaagcaattgaacttttccgggtgattccgagtgaaggaataaaaggagatagggtgaccatggtggaggctgtatctgcctgcggatatctagtagctcttgatctgcaaagtggactcatgcttatatcgaaaaaaaatgaaattaactgtgacatgcggcttggaacagctttagttcacatgtttgctagatgtggcgatcctcaaagtgcaatgaaggtgttcgataacatggcaagaagatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

102

Amino Acids

11.38

Weight (kDa)

8.45

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	144, 220
AclWI	GGATC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	243
AgsI	TTSAA	1 cut(s)	71
AluBI	AGCT	2 cut(s)	158, 233
AluI	AGCT	2 cut(s)	158, 233
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	284
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	2 cut(s)	94, 127
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	2 cut(s)	152, 252
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	19, 163, 262
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	2 cut(s)	144, 220
BspPI	GGATC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	3 cut(s)	19, 163, 262
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	142
BstDSI	CCRYGG	1 cut(s)	120
BstEII	GGTNACC	1 cut(s)	115
BstKTI	GATC	3 cut(s)	22, 166, 265
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	3 cut(s)	19, 163, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNSI	RCATGY	2 cut(s)	220, 247
BstPI	GGTNACC	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	142
CviAII	CATG	5 cut(s)	121, 181, 217, 244, 295
CviJI	RGCY	4 cut(s)	131, 158, 223, 233
CviKI_1	RGCY	4 cut(s)	131, 158, 223, 233
DpnI	GATC	3 cut(s)	21, 165, 264
DpnII	GATC	3 cut(s)	19, 163, 262
Eco130I	CCWWGG	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	149
Eco91I	GGTNACC	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	5 cut(s)	124, 184, 220, 247, 298
FaiI	YATR	6 cut(s)	122, 182, 188, 218, 245, 296
FatI	CATG	5 cut(s)	120, 180, 216, 243, 294
Fnu4HI	GCNGC	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	221
FspBI	CTAG	2 cut(s)	152, 252
GluI	GCNGC	1 cut(s)	221
HapII	CCGG	1 cut(s)	79
Hin1II	CATG	5 cut(s)	124, 184, 220, 247, 298
HinfI	GANTC	2 cut(s)	85, 177
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	2 cut(s)	94, 127
Hpy166II	GTNNAC	2 cut(s)	176, 241
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	2 cut(s)	176, 241
HpyAV	CCTTC	2 cut(s)	89, 274
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4V	TGCA	2 cut(s)	169, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
Hsp92II	CATG	5 cut(s)	124, 184, 220, 247, 298
Kzo9I	GATC	3 cut(s)	19, 163, 262
LpnPI	CCDG	2 cut(s)	92, 154
MaeI	CTAG	2 cut(s)	152, 252
MaeIII	GTNAC	2 cut(s)	115, 212
MalI	GATC	3 cut(s)	21, 165, 264
MboI	GATC	3 cut(s)	19, 163, 262
MfeI	CAATTG	1 cut(s)	66
MluCI	AATT	2 cut(s)	66, 204
MlyI	GAGTC	1 cut(s)	171
MnlI	CCTC	2 cut(s)	121, 276
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	1 cut(s)	207
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	80
MunI	CAATTG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	137
NciI	CCSGG	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	3 cut(s)	19, 163, 262
NlaIII	CATG	5 cut(s)	124, 184, 220, 247, 298
NmuCI	GTSAC	2 cut(s)	115, 212
NspI	RCATGY	2 cut(s)	220, 247
PciI	ACATGT	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	222
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
PscI	ACATGT	1 cut(s)	243
PspEI	GGTNACC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	3 cut(s)	19, 163, 262
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	80
SetI	ASST	3 cut(s)	160, 235, 285
Sse9I	AATT	2 cut(s)	66, 204
SsiI	CCGC	2 cut(s)	144, 220
SspMI	CTAG	2 cut(s)	152, 252
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	212
TaqI	TCGA	2 cut(s)	191, 288
TasI	AATT	2 cut(s)	66, 204
TauI	GCSGC	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseFI	GTSAC	2 cut(s)	115, 212
Tsp45I	GTSAC	2 cut(s)	115, 212
TspDTI	ATGAA	2 cut(s)	216, 293
XceI	RCATGY	2 cut(s)	220, 247
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	2 cut(s)	152, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.