Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Forward (+)

4375065 .. 4377058

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36250

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAACTCATTGATTTCTGGTTTCGTAAGAAATGGTCATGTGAAGTCAGCTTGGAAACGTTCAGTGAGATGCCAAAGAGTGATCTTGTTTCTTGGAACACTATAATTGGTGCTCTGTTCCAAGAGAGCAAGTTTGGGGAAGCAATTGAACTTTTCAGGGTGATGCAGACTGAGGGAATAAAAGGAGATAGGGTGACAACGGTGGAGGCTGCATCTGCCTGCGGATATCTAGGAGCTCTTGATCTTGCAAAGTGGATTCATGCTTATATTGAAGAAAAAAAAAACAAAATTAACTGTGACATGTGGCTCGGCACAGCTTTAGTTGACATGTTTGCTAGATGTGGTGACCTTCAAAATGCAATGAAGGTGTTCGATAACATGGCAAGAAGAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

131

Amino Acids

15.0

Weight (kDa)

5.21

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	28 - 66	1.9e-08	PPR repeat family
PPR	PF01535	30 - 60	2.6e-06	PPR repeat
TPR_24	PF23276	31 - 126	7.7e-06	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	222
AclI	AACGTT	1 cut(s)	59
AflIII	ACRYGT	2 cut(s)	300, 327
AgsI	TTSAA	3 cut(s)	149, 272, 353
AluBI	AGCT	3 cut(s)	51, 236, 317
AluI	AGCT	3 cut(s)	51, 236, 317
Alw21I	GWGCWC	2 cut(s)	115, 238
ApeKI	GCWGC	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	368
AsuHPI	GGTGA	3 cut(s)	172, 205, 356
BanII	GRGCYC	1 cut(s)	238
Bbv12I	GWGCWC	2 cut(s)	115, 238
BbvI	GCAGC	1 cut(s)	196
BfaI	CTAG	2 cut(s)	230, 336
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
BmsI	GCATC	3 cut(s)	60, 153, 221
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bse3DI	GCAATG	1 cut(s)	366
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	196
BsiHKAI	GWGCWC	2 cut(s)	115, 238
Bsp1286I	GDGCHC	2 cut(s)	115, 238
Bsp143I	GATC	2 cut(s)	82, 241
BspACI	CCGC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	366
BssMI	GATC	2 cut(s)	82, 241
Bst4CI	ACNGT	2 cut(s)	202, 296
Bst6I	CTCTTC	1 cut(s)	382
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	171
BstEII	GGTNACC	1 cut(s)	344
BstKTI	GATC	2 cut(s)	85, 244
BstMBI	GATC	2 cut(s)	82, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNSI	RCATGY	2 cut(s)	304, 331
BstPI	GGTNACC	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	220
CviAII	CATG	5 cut(s)	39, 260, 301, 328, 379
CviJI	RGCY	5 cut(s)	51, 209, 236, 307, 317
CviKI_1	RGCY	5 cut(s)	51, 209, 236, 307, 317
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	2 cut(s)	84, 243
DpnII	GATC	2 cut(s)	82, 241
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
Ecl136II	GAGCTC	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	238
Eco32I	GATATC	1 cut(s)	227
Eco53kI	GAGCTC	1 cut(s)	236
Eco91I	GGTNACC	1 cut(s)	344
EcoICRI	GAGCTC	1 cut(s)	236
EcoO65I	GGTNACC	1 cut(s)	344
EcoRV	GATATC	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	238
FaeI	CATG	5 cut(s)	42, 263, 304, 331, 382
FaiI	YATR	8 cut(s)	40, 104, 261, 267, 302, 329, 380, 394
FatI	CATG	5 cut(s)	38, 259, 300, 327, 378
Fnu4HI	GCNGC	1 cut(s)	210
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	2 cut(s)	230, 336
GluI	GCNGC	1 cut(s)	210
Hin1II	CATG	5 cut(s)	42, 263, 304, 331, 382
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	1 cut(s)	256
HphI	GGTGA	3 cut(s)	172, 205, 356
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	358, 359
HpyCH4III	ACNGT	2 cut(s)	202, 296
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	4 cut(s)	166, 212, 248, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	5 cut(s)	42, 263, 304, 331, 382
Kzo9I	GATC	2 cut(s)	82, 241
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	3 cut(s)	4, 142, 232
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	3 cut(s)	60, 153, 221
MaeI	CTAG	2 cut(s)	230, 336
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	3 cut(s)	193, 296, 344
MalI	GATC	2 cut(s)	84, 243
MboI	GATC	2 cut(s)	82, 241
MboII	GAAGA	1 cut(s)	284
MfeI	CAATTG	1 cut(s)	144
MhlI	GDGCHC	2 cut(s)	115, 238
MluCI	AATT	3 cut(s)	105, 144, 288
MnlI	CCTC	2 cut(s)	166, 199
MroXI	GAANNNNTTC	1 cut(s)	368
MseI	TTAA	1 cut(s)	291
MunI	CAATTG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	2 cut(s)	82, 241
NlaIII	CATG	5 cut(s)	42, 263, 304, 331, 382
NmeAIII	GCCGAG	1 cut(s)	288
NmuCI	GTSAC	3 cut(s)	193, 296, 344
NspI	RCATGY	2 cut(s)	304, 331
PciI	ACATGT	2 cut(s)	300, 327
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	211
PscI	ACATGT	2 cut(s)	300, 327
Psp124BI	GAGCTC	1 cut(s)	238
Psp1406I	AACGTT	1 cut(s)	59
PspEI	GGTNACC	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	2 cut(s)	82, 241
SduI	GDGCHC	2 cut(s)	115, 238
SetI	ASST	6 cut(s)	53, 62, 238, 319, 351, 369
SfaNI	GCATC	3 cut(s)	60, 153, 221
Sse9I	AATT	3 cut(s)	105, 144, 288
SsiI	CCGC	1 cut(s)	222
SspMI	CTAG	2 cut(s)	230, 336
SstI	GAGCTC	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	202, 296
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	1 cut(s)	372
TasI	AATT	3 cut(s)	105, 144, 288
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	3 cut(s)	193, 296, 344
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	3 cut(s)	193, 296, 344
TspDTI	ATGAA	2 cut(s)	248, 377
TspRI	CASTG	1 cut(s)	70
XceI	RCATGY	2 cut(s)	304, 331
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	2 cut(s)	230, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.