Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Forward (+)

4305759 .. 4306482

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36234

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGTTCAGTGAGATGCCAAAGAGTGATCTTGTCTCTTGGAACACTATAATTGGTGCTCTGTTCCAAGAAAGCAAGTTTGGGGAAGCAATTGAACTTTTCAGGGTGATGCAGACTGAGGGAATAAAAGGAGATAGGGTGACCATGGTGGAGGCTGCATCTGCTTGCGGATATCTAGGAGCTCTTGATCTTGAAAAGTGGATTCATGCTTATATCGGAAAAAAAAAAAAAAAAAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

79

Amino Acids

8.89

Weight (kDa)

8.76

Isoelectric Point (pI)

26.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	9 - 47	5e-09	PPR repeat family
PPR	PF01535	11 - 41	9.4e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	165
AgsI	TTSAA	2 cut(s)	92, 191
AjuI	GAANNNNNNNTTGG	2 cut(s)	60, 92
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
Alw21I	GWGCWC	2 cut(s)	58, 181
Alw26I	GTCTC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	152
AsuHPI	GGTGA	2 cut(s)	115, 148
BanII	GRGCYC	1 cut(s)	181
Bbv12I	GWGCWC	2 cut(s)	58, 181
BbvI	GCAGC	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	173
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
BmsI	GCATC	3 cut(s)	3, 96, 164
BsaJI	CCNNGG	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
BseDI	CCNNGG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	139
BsiHKAI	GWGCWC	2 cut(s)	58, 181
BsmAI	GTCTC	1 cut(s)	37
Bsp1286I	GDGCHC	2 cut(s)	58, 181
Bsp143I	GATC	2 cut(s)	25, 184
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	1 cut(s)	165
BspCNI	CTCAG	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	2 cut(s)	25, 184
BssT1I	CCWWGG	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	141
BstEII	GGTNACC	1 cut(s)	136
BstKTI	GATC	2 cut(s)	28, 187
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	25, 184
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstPI	GGTNACC	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	139
BtgI	CCRYGG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	163
CviAII	CATG	2 cut(s)	142, 203
CviJI	RGCY	2 cut(s)	152, 179
CviKI_1	RGCY	2 cut(s)	152, 179
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	2 cut(s)	27, 186
DpnII	GATC	2 cut(s)	25, 184
Ecl136II	GAGCTC	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	181
Eco32I	GATATC	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	179
Eco91I	GGTNACC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	179
EcoO65I	GGTNACC	1 cut(s)	136
EcoRV	GATATC	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	145, 206
FaiI	YATR	4 cut(s)	47, 143, 204, 210
FatI	CATG	2 cut(s)	141, 202
Fnu4HI	GCNGC	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	1 cut(s)	153
Hin1II	CATG	2 cut(s)	145, 206
HinfI	GANTC	1 cut(s)	199
HphI	GGTGA	2 cut(s)	115, 148
Hpy188I	TCNGA	1 cut(s)	215
Hpy188III	TCNNGA	2 cut(s)	182, 188
HpyCH4V	TGCA	2 cut(s)	109, 155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	145, 206
Kzo9I	GATC	2 cut(s)	25, 184
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	1 cut(s)	85
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	3 cut(s)	3, 96, 164
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	27, 186
MboI	GATC	2 cut(s)	25, 184
MfeI	CAATTG	1 cut(s)	87
MhlI	GDGCHC	2 cut(s)	58, 181
MluCI	AATT	3 cut(s)	48, 87, 235
MnlI	CCTC	2 cut(s)	109, 142
MseI	TTAA	1 cut(s)	238
MunI	CAATTG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	158
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	2 cut(s)	25, 184
NlaIII	CATG	2 cut(s)	145, 206
NmuCI	GTSAC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	181
PspEI	GGTNACC	1 cut(s)	136
SacI	GAGCTC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	238
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	25, 184
SduI	GDGCHC	2 cut(s)	58, 181
SetI	ASST	1 cut(s)	181
SfaNI	GCATC	3 cut(s)	3, 96, 164
Sse9I	AATT	3 cut(s)	48, 87, 235
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	181
StyI	CCWWGG	1 cut(s)	141
TasI	AATT	3 cut(s)	48, 87, 235
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	238
Tru9I	TTAA	1 cut(s)	238
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	13
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.