Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008380.1

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Forward (+)

84191 .. 85440

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008380.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atggctgcaatgcttcagctgagtcctctgctctcagccaccccaacggaccaaaacgaagcaccttccaaagccttccacttgttccttgaagaagaagaaataaagggtgtattgttcatgtacaattctctgatgagcggttgttactcgagtgctgggcttagtgacgaggcttttgggctcgaagattatggctttctgaggaatatgccaaaggaagctgttttctttgttttcgagagggtggctgccgggattaagcccaatttggtgacaatggtgtgcgtcatttctgcttgtgaaaagttgagggatgctccgttgagtgagagggaaggttgggataccatttgtaatgccatgattgatatgtacgtgaagtcatgcagtgcgcttggaaagtgttcaatgagatgccaaagagttgatcttgtctcttggaacactatccaagtgagcaagtttggggaagcaattgaacttttccgggtgattccgagtgaaggaataaaaggagatagggtgaccatggtggaggctgcatctgcctgcagatatctagtagctcttgatctgcaaagtggactcatgcttatatcgaaaaaaatgaaattaactgtgacatgccgcttgggacagctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

215

Amino Acids

23.75

Weight (kDa)

5.35

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	141
AciI	CCGC	2 cut(s)	141, 631
AfaI	GTAC	2 cut(s)	125, 377
AfiI	CCNNNNNNNGG	1 cut(s)	506
AgsI	TTSAA	3 cut(s)	92, 411, 482
AluBI	AGCT	4 cut(s)	19, 224, 569, 643
AluI	AGCT	4 cut(s)	19, 224, 569, 643
Alw26I	GTCTC	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	151
ApeKI	GCWGC	3 cut(s)	5, 251, 542
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
Asp700I	GAANNNNTTC	1 cut(s)	406
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	2 cut(s)	256, 491
AsuHPI	GGTGA	3 cut(s)	286, 505, 538
AvaI	CYCGRG	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	238, 529
BciVI	GTATCC	1 cut(s)	340
BcnI	CCSGG	2 cut(s)	256, 491
BcoDI	GTCTC	1 cut(s)	442
BfaI	CTAG	1 cut(s)	563
BfmI	CTRYAG	1 cut(s)	553
BfuI	GTATCC	1 cut(s)	340
BisI	GCNGC	4 cut(s)	6, 252, 543, 631
BlsI	GCNGC	4 cut(s)	7, 253, 544, 632
Bme1390I	CCNGG	2 cut(s)	256, 491
Bme18I	GGWCC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	49
BmrFI	CCNGG	2 cut(s)	256, 491
BmsI	GCATC	3 cut(s)	307, 407, 554
BplI	GAGNNNNNCTC	2 cut(s)	304, 336
BpuMI	CCSGG	2 cut(s)	256, 491
BsaAI	YACGTR	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	531
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse3DI	GCAATG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	531
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	3 cut(s)	11, 48, 194
BseXI	GCAGC	2 cut(s)	238, 529
BseYI	CCCAGC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	255, 490
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmAI	GTCTC	1 cut(s)	442
BsoBI	CYCGRG	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp1407I	TGTACA	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	430, 574
Bsp19I	CCATGG	1 cut(s)	531
BspACI	CCGC	2 cut(s)	141, 631
BspCNI	CTCAG	3 cut(s)	12, 47, 195
BspMAI	CTGCAG	1 cut(s)	557
BsrBI	CCGCTC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	15
BsrGI	TGTACA	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	531
BssMI	GATC	2 cut(s)	430, 574
BssT1I	CCWWGG	1 cut(s)	531
Bst4CI	ACNGT	1 cut(s)	622
BstAUI	TGTACA	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	553
BstDEI	CTNAG	4 cut(s)	20, 34, 164, 203
BstDSI	CCRYGG	1 cut(s)	531
BstEII	GGTNACC	1 cut(s)	526
BstF5I	GGATG	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	2 cut(s)	433, 577
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	2 cut(s)	430, 574
BstMWI	GCNNNNNNNGC	1 cut(s)	548
BstNSI	RCATGY	1 cut(s)	630
BstPI	GGTNACC	1 cut(s)	526
BstSCI	CCNGG	2 cut(s)	254, 489
BstSFI	CTRYAG	1 cut(s)	553
BstV1I	GCAGC	2 cut(s)	238, 529
BsuI	GTATCC	1 cut(s)	340
BtgI	CCRYGG	1 cut(s)	531
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	397
Cac8I	GCNNGC	1 cut(s)	553
CfoI	GCGC	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	49
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	124, 376
CviAII	CATG	6 cut(s)	121, 364, 387, 532, 592, 627
CviQI	GTAC	2 cut(s)	124, 376
DdeI	CTNAG	4 cut(s)	20, 34, 164, 203
DpnI	GATC	2 cut(s)	432, 576
DpnII	GATC	2 cut(s)	430, 574
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	49
Eco88I	CYCGRG	1 cut(s)	151
Eco91I	GGTNACC	1 cut(s)	526
EcoO65I	GGTNACC	1 cut(s)	526
EcoRV	GATATC	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	6 cut(s)	124, 367, 390, 535, 595, 630
FatI	CATG	6 cut(s)	120, 363, 386, 531, 591, 626
Fnu4HI	GCNGC	4 cut(s)	6, 252, 543, 631
FokI	GGATG	1 cut(s)	329
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	4 cut(s)	6, 252, 543, 631
FspBI	CTAG	1 cut(s)	563
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	4 cut(s)	6, 252, 543, 631
GsaI	CCCAGC	1 cut(s)	162
HapII	CCGG	2 cut(s)	255, 490
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	1 cut(s)	397
Hin1II	CATG	6 cut(s)	124, 367, 390, 535, 595, 630
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HinfI	GANTC	3 cut(s)	22, 496, 588
HpaII	CCGG	2 cut(s)	255, 490
HphI	GGTGA	3 cut(s)	286, 505, 538
Hpy166II	GTNNAC	1 cut(s)	587
Hpy188I	TCNGA	3 cut(s)	135, 204, 501
Hpy188III	TCNNGA	2 cut(s)	241, 572
Hpy8I	GTNNAC	1 cut(s)	587
HpyAV	CCTTC	4 cut(s)	75, 85, 332, 500
HpyCH4III	ACNGT	1 cut(s)	622
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	5 cut(s)	8, 390, 545, 555, 580
HpyF10VI	GCNNNNNNNGC	1 cut(s)	548
HpyF3I	CTNAG	4 cut(s)	20, 34, 164, 203
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	6 cut(s)	124, 367, 390, 535, 595, 630
HspAI	GCGC	1 cut(s)	395
Kzo9I	GATC	2 cut(s)	430, 574
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	4 cut(s)	144, 268, 503, 565
Lsp1109I	GCAGC	2 cut(s)	238, 529
LweI	GCATC	3 cut(s)	307, 407, 554
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	5 cut(s)	146, 167, 274, 526, 622
MalI	GATC	2 cut(s)	432, 576
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	2 cut(s)	430, 574
MboII	GAAGA	4 cut(s)	104, 107, 110, 200
MfeI	CAATTG	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	4 cut(s)	127, 268, 477, 614
MlyI	GAGTC	2 cut(s)	31, 582
MnlI	CCTC	7 cut(s)	36, 166, 198, 237, 306, 327, 532
MroXI	GAANNNNTTC	1 cut(s)	406
MseI	TTAA	2 cut(s)	261, 617
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	2 cut(s)	255, 490
MspR9I	CCNGG	2 cut(s)	256, 491
MunI	CAATTG	1 cut(s)	477
MwoI	GCNNNNNNNGC	1 cut(s)	548
NciI	CCSGG	2 cut(s)	256, 491
NcoI	CCATGG	1 cut(s)	531
NdeII	GATC	2 cut(s)	430, 574
NlaIII	CATG	6 cut(s)	124, 367, 390, 535, 595, 630
NmuCI	GTSAC	4 cut(s)	167, 274, 526, 622
NspI	RCATGY	1 cut(s)	630
PaeR7I	CTCGAG	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	496
PkrI	GCNGC	4 cut(s)	7, 253, 544, 632
PleI	GAGTC	2 cut(s)	30, 582
PpsI	GAGTC	2 cut(s)	30, 582
Ppu21I	YACGTR	1 cut(s)	379
PspEI	GGTNACC	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	49
PspXI	VCTCGAGB	1 cut(s)	151
PstI	CTGCAG	1 cut(s)	557
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	2 cut(s)	125, 377
RsaNI	GTAC	2 cut(s)	124, 376
SaqAI	TTAA	2 cut(s)	261, 617
SatI	GCNGC	4 cut(s)	6, 252, 543, 631
Sau3AI	GATC	2 cut(s)	430, 574
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	2 cut(s)	31, 582
ScrFI	CCNGG	2 cut(s)	256, 491
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	7 cut(s)	21, 67, 226, 343, 381, 571, 645
SfaNI	GCATC	3 cut(s)	307, 407, 554
SfcI	CTRYAG	1 cut(s)	553
Sfr274I	CTCGAG	1 cut(s)	151
SinI	GGWCC	1 cut(s)	49
SlaI	CTCGAG	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
Sse9I	AATT	4 cut(s)	127, 268, 477, 614
SsiI	CCGC	2 cut(s)	141, 631
SspMI	CTAG	1 cut(s)	563
StyD4I	CCNGG	2 cut(s)	254, 489
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	1 cut(s)	622
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	4 cut(s)	152, 186, 240, 602
TasI	AATT	4 cut(s)	127, 268, 477, 614
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	1 cut(s)	633
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	2 cut(s)	261, 617
Tru9I	TTAA	2 cut(s)	261, 617
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	4 cut(s)	167, 274, 526, 622
TseI	GCWGC	3 cut(s)	5, 251, 542
Tsp45I	GTSAC	4 cut(s)	167, 274, 526, 622
TspDTI	ATGAA	2 cut(s)	109, 626
TspGWI	ACGGA	2 cut(s)	62, 312
TspRI	CASTG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	1 cut(s)	630
XhoI	CTCGAG	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	406
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.