Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Forward (+)

2760034 .. 2763372

Gene Structure 3339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00335380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGTTTGGAGGAACACGTGTTGATTGGGAACTGGATCATGCCCGGAAGGTGTTTGATGAAATGCTTGAGAGAAATACTGTGTCGTGGACTAGTTCGATTTGTGCTTTTGGTGACTATGGTGCATGTCATTTCTGCTTGTGGGTTCATGCTTATATCGAAAAAAAAAAAAAAAAAAACGAAATTAACTGTGACATGTGGCTCGGCACAGCTTTATGACATGTTTGCTAGATGTGGTGACCTTCAAAGTGCAATGAAGGTGTTCGATAACATGGCAAGAAGAGATGTTTCTGCTTGGACAGCAGCCATTGGAGCAATGACCATGCAAGGAAATGGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

113

Amino Acids

12.61

Weight (kDa)

9.5

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	44
AcvI	CACGTG	1 cut(s)	19
AflIII	ACRYGT	4 cut(s)	16, 18, 194, 219
AgsI	TTSAA	1 cut(s)	245
AhlI	ACTAGT	1 cut(s)	91
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
AlwI	GGATC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	2 cut(s)	124, 248
BbrPI	CACGTG	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	45
BcuI	ACTAGT	1 cut(s)	91
BfaI	CTAG	2 cut(s)	92, 228
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	38
Bse3DI	GCAATG	2 cut(s)	258, 321
BseMI	GCAATG	2 cut(s)	258, 321
BseNI	ACTGG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	44
BsrDI	GCAATG	2 cut(s)	258, 321
BsrI	ACTGG	1 cut(s)	38
BssMI	GATC	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	81, 190
Bst6I	CTCTTC	1 cut(s)	274
BstBAI	YACGTR	1 cut(s)	19
BstEII	GGTNACC	1 cut(s)	236
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 311
BstNSI	RCATGY	3 cut(s)	128, 198, 223
BstPI	GGTNACC	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	314
CviAII	CATG	7 cut(s)	40, 125, 148, 195, 220, 271, 322
CviJI	RGCY	3 cut(s)	201, 211, 305
CviKI_1	RGCY	3 cut(s)	201, 211, 305
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
Eco72I	CACGTG	1 cut(s)	19
Eco91I	GGTNACC	1 cut(s)	236
EcoO65I	GGTNACC	1 cut(s)	236
FaeI	CATG	7 cut(s)	43, 128, 151, 198, 223, 274, 325
FatI	CATG	7 cut(s)	39, 124, 147, 194, 219, 270, 321
Fnu4HI	GCNGC	1 cut(s)	303
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	2 cut(s)	92, 228
GluI	GCNGC	1 cut(s)	303
HapII	CCGG	1 cut(s)	45
Hin1II	CATG	7 cut(s)	43, 128, 151, 198, 223, 274, 325
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	2 cut(s)	124, 248
Hpy166II	GTNNAC	1 cut(s)	89
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	3 cut(s)	42, 250, 251
HpyCH4III	ACNGT	2 cut(s)	81, 190
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	124, 251, 325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 311
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	7 cut(s)	43, 128, 151, 198, 223, 274, 325
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	311
LpnPI	CCDG	2 cut(s)	19, 58
Lsp1109I	GCAGC	1 cut(s)	314
MaeI	CTAG	2 cut(s)	92, 228
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	3 cut(s)	112, 190, 236
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	1 cut(s)	291
MluCI	AATT	1 cut(s)	182
MnlI	CCTC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	1 cut(s)	185
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	299, 311
NciI	CCSGG	1 cut(s)	45
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	7 cut(s)	43, 128, 151, 198, 223, 274, 325
NmeAIII	GCCGAG	1 cut(s)	182
NmuCI	GTSAC	3 cut(s)	112, 190, 236
NspI	RCATGY	3 cut(s)	128, 198, 223
PciI	ACATGT	2 cut(s)	194, 219
PdmI	GAANNNNTTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	304
PmaCI	CACGTG	1 cut(s)	19
PmlI	CACGTG	1 cut(s)	19
Ppu21I	YACGTR	1 cut(s)	19
PscI	ACATGT	2 cut(s)	194, 219
PspCI	CACGTG	1 cut(s)	19
PspEI	GGTNACC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	1 cut(s)	36
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	5 cut(s)	21, 53, 213, 243, 261
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SpeI	ACTAGT	1 cut(s)	91
Sse9I	AATT	1 cut(s)	182
SspMI	CTAG	2 cut(s)	92, 228
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	2 cut(s)	81, 190
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	3 cut(s)	97, 158, 264
TasI	AATT	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TseFI	GTSAC	3 cut(s)	112, 190, 236
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	3 cut(s)	112, 190, 236
TspDTI	ATGAA	3 cut(s)	74, 136, 269
XceI	RCATGY	3 cut(s)	128, 198, 223
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	2 cut(s)	92, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.