Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Reverse (-)

2016607 .. 2017157

Gene Structure 551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35988

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGGTGAAATGCTACAACAGGGCTTAAGACCCGACAATGTTATGTGCCATATCAGCTTTTGCCAACTAAGTGATTCTCTCTCTGGAAAGTGTTCCCATGGTTATGTTCTAAGGAATGGACCAGAAGGTTGGGATACGATTTGCAATGCCATGATTGACATGTACAAGAAGTGCAGCCAACCAGAAATGGCCTGCATAATTTTTGACAATATGTCGAATAAGATTGTACTATCACGGAACTCCTTGATTTCTGGTTTCATAAGAAGTGGTGATGTGAAGTCAGTTTGGAAAATGTTCAATGAGATGCGAAAAAGTGATCTTGTTTCTTGGAACTCTATGATTGGTGCTCTGGTCCAAGAGAGCAGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

123

Amino Acids

13.93

Weight (kDa)

7.59

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	80 - 105	2.6e-06	PPR repeat family
PPR	PF01535	80 - 106	4.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	354
AfaI	GTAC	2 cut(s)	164, 228
AflII	CTTAAG	1 cut(s)	25
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	298
AhdI	GACNNNNNGTC	1 cut(s)	211
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
Alw21I	GWGCWC	1 cut(s)	349
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	174
Asp700I	GAANNNNTTC	2 cut(s)	91, 293
AspS9I	GGNCC	2 cut(s)	119, 352
AsuHPI	GGTGA	2 cut(s)	17, 281
AvaII	GGWCC	2 cut(s)	119, 352
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	186
BciVI	GTATCC	1 cut(s)	127
BfrI	CTTAAG	1 cut(s)	25
BfuAI	ACCTGC	1 cut(s)	354
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme18I	GGWCC	2 cut(s)	119, 352
BmeRI	GACNNNNNGTC	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	119, 352
BmsI	GCATC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	193
BshFI	GGCC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp1407I	TGTACA	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	316
Bsp19I	CCATGG	1 cut(s)	97
BspANI	GGCC	1 cut(s)	191
BspMI	ACCTGC	1 cut(s)	354
BspTI	CTTAAG	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	151
BsrGI	TGTACA	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	97
BstAFI	CTTAAG	1 cut(s)	25
BstAUI	TGTACA	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	2 cut(s)	68, 110
BstDSI	CCRYGG	1 cut(s)	97
BstKTI	GATC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNSI	RCATGY	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	186
BstXI	CCANNNNNNTGG	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	97
BveI	ACCTGC	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	193
Cfr13I	GGNCC	2 cut(s)	119, 352
Csp6I	GTAC	2 cut(s)	163, 227
CviAII	CATG	3 cut(s)	98, 151, 160
CviJI	RGCY	4 cut(s)	24, 57, 177, 191
CviKI_1	RGCY	4 cut(s)	24, 57, 177, 191
CviQI	GTAC	2 cut(s)	163, 227
DdeI	CTNAG	2 cut(s)	68, 110
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
DriI	GACNNNNNGTC	1 cut(s)	211
Eam1105I	GACNNNNNGTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	97
Eco47I	GGWCC	2 cut(s)	119, 352
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	3 cut(s)	101, 154, 163
FatI	CATG	3 cut(s)	97, 150, 159
Fnu4HI	GCNGC	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	191
Hin1II	CATG	3 cut(s)	101, 154, 163
HinfI	GANTC	1 cut(s)	74
HphI	GGTGA	2 cut(s)	17, 281
Hpy188III	TCNNGA	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	119
HpyCH4V	TGCA	3 cut(s)	144, 174, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	2 cut(s)	68, 110
Hsp92II	CATG	3 cut(s)	101, 154, 163
Kzo9I	GATC	1 cut(s)	316
LpnPI	CCDG	8 cut(s)	5, 69, 135, 195, 205, 237, 335, 349
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	1 cut(s)	294
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	1 cut(s)	198
MroXI	GAANNNNTTC	2 cut(s)	91, 293
MseI	TTAA	1 cut(s)	26
MslI	CAYNNNNRTG	1 cut(s)	102
MspCI	CTTAAG	1 cut(s)	25
MwoI	GCNNNNNNNGC	1 cut(s)	54
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	3 cut(s)	101, 154, 163
NspI	RCATGY	1 cut(s)	163
PciI	ACATGT	1 cut(s)	159
PdmI	GAANNNNTTC	2 cut(s)	91, 293
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	176
PscI	ACATGT	1 cut(s)	159
PspPI	GGNCC	2 cut(s)	119, 352
RsaI	GTAC	2 cut(s)	164, 228
RsaNI	GTAC	2 cut(s)	163, 227
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	2 cut(s)	119, 352
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	3 cut(s)	59, 130, 368
SfaNI	GCATC	1 cut(s)	294
SinI	GGWCC	2 cut(s)	119, 352
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	97
TaqI	TCGA	1 cut(s)	215
TasI	AATT	1 cut(s)	198
TatI	WGTACW	2 cut(s)	162, 226
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseI	GCWGC	1 cut(s)	174
TspDTI	ATGAA	1 cut(s)	247
TspGWI	ACGGA	1 cut(s)	250
Vha464I	CTTAAG	1 cut(s)	25
VpaK11BI	GGWCC	2 cut(s)	119, 352
XceI	RCATGY	1 cut(s)	163
XmnI	GAANNNNTTC	2 cut(s)	91, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.