Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Reverse (-)

18654189 .. 18654623

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55847

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGCCCTGGAAGGAAATGGGGAGCGAGCTCTAGAGCTTTTCGATGACATTCTTAACCAAGGAGTGAAACCAGATGAAGTAGTCTTTGTGGCAGTACTAACAGCATGCAGCAATGTTGGTCTTTTGGAACATGGACGGAACATTTCATGTCAATGCAGTTGGTCCATGGCATTTTCCCTCATATTGTTCATTACGGTTGCACAGTCGATCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

71

Amino Acids

7.75

Weight (kDa)

4.33

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	2 cut(s)	29, 37
AluI	AGCT	2 cut(s)	29, 37
Alw21I	GWGCWC	1 cut(s)	31
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	108
AspS9I	GGNCC	2 cut(s)	4, 162
AvaII	GGWCC	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	8
BfaI	CTAG	2 cut(s)	32, 214
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
BmcAI	AGTACT	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	8
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	2 cut(s)	4, 162
BmrFI	CCNGG	1 cut(s)	8
BsaJI	CCNNGG	3 cut(s)	6, 58, 165
Bse3DI	GCAATG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	3 cut(s)	6, 58, 165
BseMI	GCAATG	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	120
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	207
Bsp19I	CCATGG	1 cut(s)	165
BspANI	GGCC	1 cut(s)	5
BsrDI	GCAATG	1 cut(s)	118
BssECI	CCNNGG	3 cut(s)	6, 58, 165
BssMI	GATC	1 cut(s)	207
BssT1I	CCWWGG	2 cut(s)	58, 165
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	196, 204
BstC8I	GCNNGC	2 cut(s)	27, 106
BstDSI	CCRYGG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	27, 106
Cfr13I	GGNCC	2 cut(s)	4, 162
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	4 cut(s)	105, 131, 147, 166
CviJI	RGCY	3 cut(s)	5, 29, 37
CviKI_1	RGCY	3 cut(s)	5, 29, 37
CviQI	GTAC	1 cut(s)	95
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	29
Eco130I	CCWWGG	2 cut(s)	58, 165
Eco24I	GRGCYC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	29
EcoICRI	GAGCTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	6
EcoT14I	CCWWGG	2 cut(s)	58, 165
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	2 cut(s)	58, 165
FaeI	CATG	4 cut(s)	108, 134, 150, 169
FaiI	YATR	5 cut(s)	106, 132, 148, 167, 182
FatI	CATG	4 cut(s)	104, 130, 146, 165
Fnu4HI	GCNGC	1 cut(s)	109
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	1 cut(s)	109
FspBI	CTAG	2 cut(s)	32, 214
GluI	GCNGC	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	108, 134, 150, 169
Hpy188III	TCNNGA	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	5
HpyCH4III	ACNGT	2 cut(s)	196, 204
HpyCH4V	TGCA	3 cut(s)	108, 156, 200
Hsp92II	CATG	4 cut(s)	108, 134, 150, 169
Kzo9I	GATC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	2 cut(s)	20, 84
Lsp1109I	GCAGC	1 cut(s)	120
MaeI	CTAG	2 cut(s)	32, 214
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	31
MnlI	CCTC	1 cut(s)	188
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	4 cut(s)	108, 134, 150, 169
NspI	RCATGY	1 cut(s)	108
PaeI	GCATGC	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	110
Psp124BI	GAGCTC	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	4, 162
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	1 cut(s)	207
Sau96I	GGNCC	2 cut(s)	4, 162
ScaI	AGTACT	1 cut(s)	96
ScrFI	CCNGG	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	2 cut(s)	31, 39
SinI	GGWCC	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	151
SphI	GCATGC	1 cut(s)	108
SspMI	CTAG	2 cut(s)	32, 214
SstI	GAGCTC	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	2 cut(s)	58, 165
TaaI	ACNGT	2 cut(s)	196, 204
TaqI	TCGA	2 cut(s)	42, 206
TatI	WGTACW	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseI	GCWGC	1 cut(s)	108
TspDTI	ATGAA	3 cut(s)	90, 135, 178
TspGWI	ACGGA	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	162
XbaI	TCTAGA	1 cut(s)	31
XceI	RCATGY	1 cut(s)	108
XspI	CTAG	2 cut(s)	32, 214
ZrmI	AGTACT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.