Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Reverse (-)

18603192 .. 18603566

Gene Structure 375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55842

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGATTGACATGTACATGAAGTGTAGCCAAGAAGAGATGGCCTGCATAATTTTTGACAATATGCCGAATAAGACTGTAGTATCATGGAACTCATTGATTTCTGGTTTCATAAGAAGTGGTGATGTGAAGTCAGCTTGGAAAGTGTTCAATGAGATGCAAAAGATTGATCTTGTCTCTTGGAACACTCTGATTGGTGCTCTGGTCCACGAGAGCAAGTTTGAGGAAGCAGTTGAACTTTTTCGCGTGATGAGGACTGAGGGAATAAAAGGAAATAGGGTGACCATGGTGGAGGTTGCATCTACCTGCGGATATCTAGGAGCTCTTGATCTTGCAAAGTGGACTCATGCATATATCGAAAAAAAAGAACATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

124

Amino Acids

14.19

Weight (kDa)

5.9

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	25 - 54	4e-10	PPR repeat family
PPR_1	PF12854	25 - 53	8.8e-08	PPR repeat
PPR	PF01535	27 - 55	6.1e-09	PPR repeat
PPR_2	PF13041	56 - 94	3e-09	PPR repeat family
PPR	PF01535	58 - 88	5.5e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	311
AccII	CGCG	1 cut(s)	243
AciI	CCGC	1 cut(s)	306
AfaI	GTAC	1 cut(s)	14
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	2 cut(s)	148, 233
AluBI	AGCT	2 cut(s)	134, 320
AluI	AGCT	2 cut(s)	134, 320
Alw21I	GWGCWC	2 cut(s)	199, 322
Alw26I	GTCTC	1 cut(s)	178
AoxI	GGCC	1 cut(s)	39
Asp700I	GAANNNNTTC	2 cut(s)	143, 237
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	131, 289
AvaII	GGWCC	1 cut(s)	202
BaeI	ACNNNNGTAYC	2 cut(s)	63, 96
BanII	GRGCYC	1 cut(s)	322
BauI	CACGAG	1 cut(s)	206
Bbv12I	GWGCWC	2 cut(s)	199, 322
BccI	CCATC	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
BmsI	GCATC	2 cut(s)	144, 305
BsaJI	CCNNGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	246
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	41
BsiHKAI	GWGCWC	2 cut(s)	199, 322
BsmAI	GTCTC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	2 cut(s)	199, 322
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	166, 325
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	243
BspMI	ACCTGC	1 cut(s)	311
BsrGI	TGTACA	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	2 cut(s)	166, 325
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	27
BstAUI	TGTACA	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	255
BstDSI	CCRYGG	1 cut(s)	282
BstEII	GGTNACC	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	243
BstKTI	GATC	2 cut(s)	169, 328
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	2 cut(s)	166, 325
BstNSI	RCATGY	1 cut(s)	13
BstPI	GGTNACC	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	75
BstUI	CGCG	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	282
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	5 cut(s)	10, 16, 84, 283, 344
CviJI	RGCY	4 cut(s)	27, 41, 134, 320
CviKI_1	RGCY	4 cut(s)	27, 41, 134, 320
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	2 cut(s)	168, 327
DpnII	GATC	2 cut(s)	166, 325
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	322
Eco32I	GATATC	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	320
Eco91I	GGTNACC	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	320
EcoO65I	GGTNACC	1 cut(s)	277
EcoRV	GATATC	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	5 cut(s)	13, 19, 87, 286, 347
FatI	CATG	5 cut(s)	9, 15, 83, 282, 343
FriOI	GRGCYC	1 cut(s)	322
FspBI	CTAG	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	41
Hin1II	CATG	5 cut(s)	13, 19, 87, 286, 347
HinfI	GANTC	1 cut(s)	340
HphI	GGTGA	2 cut(s)	131, 289
Hpy166II	GTNNAC	2 cut(s)	205, 339
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	1 cut(s)	323
Hpy8I	GTNNAC	2 cut(s)	205, 339
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	5 cut(s)	45, 157, 296, 332, 347
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	5 cut(s)	13, 19, 87, 286, 347
Kzo9I	GATC	2 cut(s)	166, 325
LmnI	GCTCC	1 cut(s)	317
LpnPI	CCDG	4 cut(s)	55, 87, 185, 316
LweI	GCATC	2 cut(s)	144, 305
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	2 cut(s)	168, 327
MboI	GATC	2 cut(s)	166, 325
MboII	GAAGA	1 cut(s)	44
MhlI	GDGCHC	2 cut(s)	199, 322
MluCI	AATT	2 cut(s)	48, 370
MlyI	GAGTC	1 cut(s)	334
MnlI	CCTC	4 cut(s)	214, 243, 250, 283
Mph1103I	ATGCAT	1 cut(s)	349
MroXI	GAANNNNTTC	2 cut(s)	143, 237
MseI	TTAA	1 cut(s)	373
MslI	CAYNNNNRTG	1 cut(s)	14
MvnI	CGCG	1 cut(s)	243
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	2 cut(s)	166, 325
NlaIII	CATG	5 cut(s)	13, 19, 87, 286, 347
NmuCI	GTSAC	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	1 cut(s)	13
PciI	ACATGT	1 cut(s)	9
PdmI	GAANNNNTTC	2 cut(s)	143, 237
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PscI	ACATGT	1 cut(s)	9
Psp124BI	GAGCTC	1 cut(s)	322
PspEI	GGTNACC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	202
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	14
SacI	GAGCTC	1 cut(s)	322
SaqAI	TTAA	1 cut(s)	373
Sau3AI	GATC	2 cut(s)	166, 325
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	334
SduI	GDGCHC	2 cut(s)	199, 322
SetI	ASST	4 cut(s)	136, 294, 305, 322
SfaNI	GCATC	2 cut(s)	144, 305
SfcI	CTRYAG	1 cut(s)	75
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	14
Sse9I	AATT	2 cut(s)	48, 370
SsiI	CCGC	1 cut(s)	306
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	322
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	1 cut(s)	354
TasI	AATT	2 cut(s)	48, 370
TatI	WGTACW	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	373
Tru9I	TTAA	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	32, 97
VpaK11BI	GGWCC	1 cut(s)	202
XceI	RCATGY	1 cut(s)	13
XmnI	GAANNNNTTC	2 cut(s)	143, 237
XspI	CTAG	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.