Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Forward (+)

10198861 .. 10200163

Gene Structure 1303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36701

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCTGCAAAGCGGCTTTTTGATGAATGCTGGTGACGTGAAATCAGCTTGGAAAATGTTCAATGAGATGCCAAGGAGTGATCTTGTCTCTTGGAACACTATGATTGGTGCTCTGGTCCAAGAGAGCAAGTTTGAGAAAGCAATTGAACTTTTCCGGGTGATTCAGAGTGAGGGAATAAAAGGATATAGGGTGACCATGGTGGAGATTGCGTCTGCCTGCGGATATCTAGGAGCTCTTGTTCTTGCAAAGTGGACTCATGCTTATATTGAAAAAAAAAAAAATGAAATTAACTGTAATATGCGGCTCGGGACAGCCTTAGTTGACATGTTTGCTAGATGTGGTGACCCTCAAAGTGCAATGAAGGTGTTCGATAATATGGCCAGAAGAGATGTTTCTGCTTGGACAGCAGCCATTGGGGCAATGACCATGGGGAAATGGGGAACGAGCTCTAGAGCTTTTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

154

Amino Acids

17.19

Weight (kDa)

9.4

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	27 - 60	2.2e-06	PPR repeat family
PPR	PF01535	29 - 59	4.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	12, 219, 301
AcoI	YGGCCR	1 cut(s)	378
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	3 cut(s)	61, 146, 269
AjiI	CACGTC	1 cut(s)	37
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
AluBI	AGCT	4 cut(s)	47, 233, 447, 455
AluI	AGCT	4 cut(s)	47, 233, 447, 455
Alw21I	GWGCWC	3 cut(s)	112, 235, 449
Alw26I	GTCTC	1 cut(s)	91
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	2 cut(s)	4, 407
Asp700I	GAANNNNTTC	2 cut(s)	56, 365
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	4 cut(s)	44, 169, 202, 353
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	115
BalI	TGGCCA	1 cut(s)	380
BanII	GRGCYC	2 cut(s)	235, 449
Bbv12I	GWGCWC	3 cut(s)	112, 235, 449
BbvI	GCAGC	1 cut(s)	419
BcnI	CCSGG	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	3 cut(s)	227, 333, 450
BglI	GCCNNNNNGGC	1 cut(s)	416
BisI	GCNGC	4 cut(s)	5, 13, 302, 408
BlsI	GCNGC	4 cut(s)	6, 14, 303, 409
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	305
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	71, 195, 426
BsaXI	ACNNNNNCTCC	4 cut(s)	194, 222, 224, 252
Bse3DI	GCAATG	2 cut(s)	363, 426
BseDI	CCNNGG	3 cut(s)	71, 195, 426
BseMI	GCAATG	2 cut(s)	363, 426
BseXI	GCAGC	1 cut(s)	419
BshFI	GGCC	1 cut(s)	380
BsiHKAI	GWGCWC	3 cut(s)	112, 235, 449
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	380
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	3 cut(s)	112, 235, 449
Bsp143I	GATC	1 cut(s)	79
Bsp19I	CCATGG	2 cut(s)	195, 426
BspACI	CCGC	3 cut(s)	12, 219, 301
BspANI	GGCC	1 cut(s)	380
BsrDI	GCAATG	2 cut(s)	363, 426
BssECI	CCNNGG	3 cut(s)	71, 195, 426
BssMI	GATC	1 cut(s)	79
BssT1I	CCWWGG	3 cut(s)	71, 195, 426
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	316
BstDSI	CCRYGG	2 cut(s)	195, 426
BstEII	GGTNACC	2 cut(s)	190, 341
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 416
BstNSI	RCATGY	1 cut(s)	328
BstPI	GGTNACC	2 cut(s)	190, 341
BstSCI	CCNGG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	380
BtgI	CCRYGG	2 cut(s)	195, 426
BtrI	CACGTC	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	115
CseI	GACGC	1 cut(s)	198
CviAII	CATG	4 cut(s)	196, 257, 325, 427
CviJI	RGCY	9 cut(s)	15, 47, 233, 304, 314, 380, 410, 447, 455
CviKI_1	RGCY	9 cut(s)	15, 47, 233, 304, 314, 380, 410, 447, 455
DdeI	CTNAG	1 cut(s)	316
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	379
Ecl136II	GAGCTC	2 cut(s)	233, 447
Eco130I	CCWWGG	3 cut(s)	71, 195, 426
Eco24I	GRGCYC	2 cut(s)	235, 449
Eco32I	GATATC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	115
Eco53kI	GAGCTC	2 cut(s)	233, 447
Eco88I	CYCGRG	1 cut(s)	305
Eco91I	GGTNACC	2 cut(s)	190, 341
EcoICRI	GAGCTC	2 cut(s)	233, 447
EcoO65I	GGTNACC	2 cut(s)	190, 341
EcoRV	GATATC	1 cut(s)	224
EcoT14I	CCWWGG	3 cut(s)	71, 195, 426
EcoT38I	GRGCYC	2 cut(s)	235, 449
ErhI	CCWWGG	3 cut(s)	71, 195, 426
FaeI	CATG	4 cut(s)	199, 260, 328, 430
FaiI	YATR	9 cut(s)	101, 186, 197, 258, 264, 299, 326, 377, 428
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	4 cut(s)	195, 256, 324, 426
Fnu4HI	GCNGC	4 cut(s)	5, 13, 302, 408
FriOI	GRGCYC	2 cut(s)	235, 449
Fsp4HI	GCNGC	4 cut(s)	5, 13, 302, 408
FspBI	CTAG	3 cut(s)	227, 333, 450
GluI	GCNGC	4 cut(s)	5, 13, 302, 408
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	1 cut(s)	154
HgaI	GACGC	1 cut(s)	198
Hin1II	CATG	4 cut(s)	199, 260, 328, 430
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	2 cut(s)	160, 253
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	4 cut(s)	44, 169, 202, 353
Hpy166II	GTNNAC	2 cut(s)	252, 322
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	2 cut(s)	307, 450
Hpy8I	GTNNAC	2 cut(s)	252, 322
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	7, 245, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 416
HpyF3I	CTNAG	1 cut(s)	316
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	4 cut(s)	199, 260, 328, 430
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	5 cut(s)	15, 98, 167, 229, 394
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	3 cut(s)	227, 333, 450
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	3 cut(s)	32, 190, 341
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	1 cut(s)	396
MfeI	CAATTG	1 cut(s)	141
MhlI	GDGCHC	3 cut(s)	112, 235, 449
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	2 cut(s)	141, 285
MluNI	TGGCCA	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	247
MnlI	CCTC	2 cut(s)	163, 357
Mox20I	TGGCCA	1 cut(s)	380
MroXI	GAANNNNTTC	2 cut(s)	56, 365
MscI	TGGCCA	1 cut(s)	380
MseI	TTAA	1 cut(s)	288
Msp20I	TGGCCA	1 cut(s)	380
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	1 cut(s)	155
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	404, 416
NciI	CCSGG	1 cut(s)	155
NcoI	CCATGG	2 cut(s)	195, 426
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	4 cut(s)	199, 260, 328, 430
NmuCI	GTSAC	3 cut(s)	32, 190, 341
NspI	RCATGY	1 cut(s)	328
PciI	ACATGT	1 cut(s)	324
PctI	GAATGC	1 cut(s)	31
PdmI	GAANNNNTTC	2 cut(s)	56, 365
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	4 cut(s)	6, 14, 303, 409
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PscI	ACATGT	1 cut(s)	324
Psp124BI	GAGCTC	2 cut(s)	235, 449
PspEI	GGTNACC	2 cut(s)	190, 341
PspPI	GGNCC	1 cut(s)	115
SacI	GAGCTC	2 cut(s)	235, 449
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	4 cut(s)	5, 13, 302, 408
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	3 cut(s)	112, 235, 449
SetI	ASST	6 cut(s)	39, 49, 235, 366, 449, 457
SfaNI	GCATC	1 cut(s)	57
SinI	GGWCC	1 cut(s)	115
Sse9I	AATT	2 cut(s)	141, 285
SsiI	CCGC	3 cut(s)	12, 219, 301
SspMI	CTAG	3 cut(s)	227, 333, 450
SstI	GAGCTC	2 cut(s)	235, 449
StyD4I	CCNGG	1 cut(s)	153
StyI	CCWWGG	3 cut(s)	71, 195, 426
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	369, 460
TasI	AATT	2 cut(s)	141, 285
TauI	GCSGC	2 cut(s)	15, 304
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseFI	GTSAC	3 cut(s)	32, 190, 341
TseI	GCWGC	2 cut(s)	4, 407
Tsp45I	GTSAC	3 cut(s)	32, 190, 341
TspDTI	ATGAA	3 cut(s)	38, 297, 374
VpaK11BI	GGWCC	1 cut(s)	115
XbaI	TCTAGA	1 cut(s)	449
XceI	RCATGY	1 cut(s)	328
XmnI	GAANNNNTTC	2 cut(s)	56, 365
XspI	CTAG	3 cut(s)	227, 333, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.