Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Forward (+)

32741733 .. 32743833

Gene Structure 2101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0308300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAAGCTCGCAGGACTCAAATCAATCGACGACGCTCACGACGAGTCGGTATGGGCCGTCACCTGGGTTCCGGCCACCGAAGCCCGACCCGCTTTGTTGTTAACCGGGTCACTCGACGAGACCGTTCGGCTATGGCAACCGGACGAGCTGGTGAACCGGGGAAAGATGACCGGACACTGCCTCGGCGTGGCTTCCGTGGCGGCTCACCCCTCCGGCTACATCGCCGCCTCGGCTTCGCTTGATAGCTTCGTTAGGATCTTCGACGTTGACTCCAACACCACCATCGCCAGTTTCGAGGCGCCGCCCTCTGAAGTCTGGCAATTACGCTTCAATCCCCAGGGTACCATGCTAGCCGCAGCTGGTGGTGGCAGTGCCTCAGTAAAGGTCTGGGACACCAGCACGTGGAACGTGGTTGCCACATTGTCGATTCCTCGCCCAGAAGGAACCAAGCCTGCTGACAAAAGCAGCAGCAAGAAGTTTGTGCTATCAGTTGCCTGGAGTCCTGATGGGAGACGCATAGCTTGTGGCTCCATGGATGGAACTGTTTCTGTTTTCGACACAGATCGCGGCAAGTTCCTGCACCACCTGGAAGGCCACTGCATGCCCGTGAGGTCTCTTGTGTTTTCCCCTGTTGAACCGCGGTTACTCTTCACTGGCTCAGACGATCAACATGTGCACATGTATGATGCTGAGGGGAAAACCCAGGTTGGGTCCATGTCAGGGCATAACGGCTGGGTCTTGAGTGTCGATGCAAGCACAGATGGGGCAGCCCTTGCAACTGGTTCAAGTGATAGAACTGTGAAGCTGTGGGATATTGGCATGAAGGCAGCTGTGCAGACAATGAGCAACCATAATGACCAAGTCTGGGGAGTGGCCTTTCGACCTGGAGGAATGCCTGGCAGACTTGCTAGTGTCTCTGATGACAAGAGCATATCACTGTATGACTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

317

Amino Acids

33.91

Weight (kDa)

5.65

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_2nd	PF25172	7 - 87	3.6e-06	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	11 - 144	1.3e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	12 - 131	4.4e-14	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	12 - 142	7.9e-20	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	13 - 140	1.1e-18	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	13 - 141	4.7e-18	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	13 - 140	1.5e-09	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	25 - 136	8.6e-08	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	31 - 218	1.4e-20	WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	32 - 123	8.6e-06	WDR90/POC16, second beta-propeller
Beta-prop_EML	PF23409	41 - 232	5.2e-08	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR19_1st	PF23389	71 - 234	4.1e-08	WDR19 first beta-propeller
Beta-prop_WDR3_2nd	PF25172	85 - 315	7.4e-27	WDR3 second beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	105 - 235	6.8e-08	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	125 - 315	1.1e-34	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	125 - 289	6.5e-19	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	153 - 315	7.5e-26	CDC20/Fizzy WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	153 - 236	2.6e-07	MABP1/WDR62 second WD40 domain
ANAPC4_WD40	PF12894	155 - 199	4.3e-06	Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	155 - 233	5.5e-06	WDR90/POC16, second beta-propeller
WD40_Prp19	PF24814	156 - 209	1.2e-06	Prp19 WD40 domain
Beta-prop_RIG_2nd	PF23775	157 - 208	1.4e-06	RIG second beta-propeller
Beta-prop_WDR5	PF25175	157 - 316	1.1e-33	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	158 - 243	7.3e-19	THOC3 beta-propeller domain
WDR55	PF24796	158 - 295	5e-15	WDR55
WD40	PF00400	159 - 186	1.9e-07	WD domain, G-beta repeat
WD40_Gbeta	PF25391	159 - 316	6e-16	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st	PF25171	159 - 270	4.9e-08	WDR36/Utp21 first beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	173 - 297	3.4e-09	WDR36/Utp21 first beta-propeller
WD40	PF00400	190 - 229	8.8e-06	WD domain, G-beta repeat
EIF3I	PF24805	196 - 295	2e-11	EIF3I
WD40_Prp19	PF24814	212 - 316	1e-15	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	214 - 281	1.2e-09	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	215 - 297	5.2e-07	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	234 - 271	4.1e-09	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	237 - 316	1.5e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	239 - 316	6.5e-07	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	242 - 316	5.7e-14	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	341
AccB1I	GGYRCC	2 cut(s)	298, 341
AccB7I	CCANNNNNTGG	1 cut(s)	402
AccII	CGCG	2 cut(s)	567, 640
AciI	CCGC	8 cut(s)	90, 200, 225, 302, 354, 567, 638, 640
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	330
AcvI	CACGTG	1 cut(s)	402
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	6 cut(s)	63, 187, 402, 708, 720, 865
AflIII	ACRYGT	2 cut(s)	670, 678
AgsI	TTSAA	3 cut(s)	331, 635, 786
AjnI	CCWGG	7 cut(s)	62, 336, 494, 585, 702, 883, 895
AluBI	AGCT	7 cut(s)	7, 148, 246, 359, 521, 805, 830
AluI	AGCT	7 cut(s)	7, 148, 246, 359, 521, 805, 830
Alw21I	GWGCWC	1 cut(s)	678
Alw26I	GTCTC	4 cut(s)	113, 505, 618, 919
Alw44I	GTGCAC	1 cut(s)	674
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	4 cut(s)	54, 72, 592, 873
ApaLI	GTGCAC	1 cut(s)	674
ApeKI	GCWGC	5 cut(s)	356, 465, 468, 767, 827
Asp700I	GAANNNNTTC	1 cut(s)	544
Asp718I	GGTACC	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	54, 711
AsuC2I	CCSGG	2 cut(s)	106, 158
AsuHPI	GGTGA	3 cut(s)	52, 163, 197
AsuNHI	GCTAGC	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	711
BaeGI	GKGCMC	1 cut(s)	678
BanI	GGYRCC	2 cut(s)	298, 341
BbrPI	CACGTG	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	678
BbvCI	CCTCAGC	1 cut(s)	690
BbvI	GCAGC	5 cut(s)	368, 477, 480, 779, 839
BccI	CCATC	4 cut(s)	290, 500, 530, 755
BceAI	ACGGC	2 cut(s)	41, 745
BciT130I	CCWGG	7 cut(s)	64, 338, 496, 587, 704, 885, 897
BcnI	CCSGG	2 cut(s)	106, 158
BcoDI	GTCTC	4 cut(s)	113, 505, 618, 919
BfaI	CTAG	2 cut(s)	350, 909
BfoI	RGCGCY	1 cut(s)	302
BglI	GCCNNNNNGGC	1 cut(s)	230
Bme1390I	CCNGG	9 cut(s)	64, 106, 158, 338, 496, 587, 704, 885, 897
Bme18I	GGWCC	1 cut(s)	711
BmgT120I	GGNCC	2 cut(s)	54, 711
BmiI	GGNNCC	6 cut(s)	69, 300, 343, 445, 529, 712
BmrFI	CCNGG	9 cut(s)	64, 106, 158, 338, 496, 587, 704, 885, 897
BmsI	GCATC	2 cut(s)	676, 739
BmtI	GCTAGC	1 cut(s)	353
BpmI	CTGGAG	2 cut(s)	517, 906
Bpu10I	CCTNAGC	1 cut(s)	690
BpuEI	CTTGAG	1 cut(s)	760
BpuMI	CCSGG	2 cut(s)	106, 158
BsaAI	YACGTR	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	299
BsaI	GGTCTC	2 cut(s)	113, 618
BsaWI	WCCGGW	2 cut(s)	139, 170
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	6 cut(s)	63, 187, 402, 708, 720, 865
Bse1I	ACTGG	3 cut(s)	288, 658, 784
BseBI	CCWGG	7 cut(s)	64, 338, 496, 587, 704, 885, 897
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	6 cut(s)	63, 187, 402, 708, 720, 865
BseMII	CTCAG	3 cut(s)	390, 672, 681
BseNI	ACTGG	3 cut(s)	288, 658, 784
BseSI	GKGCMC	1 cut(s)	678
BseXI	GCAGC	5 cut(s)	368, 477, 480, 779, 839
BseYI	CCCAGC	1 cut(s)	732
BsgI	GTGCAG	2 cut(s)	563, 854
Bsh1236I	CGCG	2 cut(s)	567, 640
BshFI	GGCC	4 cut(s)	56, 74, 594, 875
BshNI	GGYRCC	2 cut(s)	298, 341
BsiHKAI	GWGCWC	1 cut(s)	678
BsiSI	CCGG	6 cut(s)	71, 105, 140, 157, 171, 213
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	6 cut(s)	63, 187, 402, 708, 720, 865
BsmAI	GTCTC	4 cut(s)	113, 505, 618, 919
BsmBI	CGTCTC	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	404
BsmI	GAATGC	1 cut(s)	897
BsnI	GGCC	4 cut(s)	56, 74, 594, 875
Bso31I	GGTCTC	2 cut(s)	113, 618
Bsp1286I	GDGCHC	1 cut(s)	678
Bsp143I	GATC	3 cut(s)	255, 562, 664
Bsp19I	CCATGG	1 cut(s)	531
BspACI	CCGC	8 cut(s)	90, 200, 225, 302, 354, 567, 638, 640
BspANI	GGCC	4 cut(s)	56, 74, 594, 875
BspCNI	CTCAG	3 cut(s)	389, 671, 682
BspFNI	CGCG	2 cut(s)	567, 640
BspLI	GGNNCC	6 cut(s)	69, 300, 343, 445, 529, 712
BspOI	GCTAGC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	2 cut(s)	298, 341
BspTNI	GGTCTC	2 cut(s)	113, 618
BsrI	ACTGG	3 cut(s)	288, 658, 784
BssMI	GATC	3 cut(s)	255, 562, 664
BssNI	GRCGYC	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	7 cut(s)	64, 338, 496, 587, 704, 885, 897
Bst4CI	ACNGT	4 cut(s)	124, 544, 799, 939
Bst6I	CTCTTC	1 cut(s)	653
BstACI	GRCGYC	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstBAI	YACGTR	1 cut(s)	402
BstC8I	GCNNGC	5 cut(s)	9, 351, 453, 602, 754
BstDEI	CTNAG	3 cut(s)	376, 658, 690
BstDSI	CCRYGG	3 cut(s)	195, 531, 638
BstF5I	GGATG	1 cut(s)	541
BstFNI	CGCG	2 cut(s)	567, 640
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	3 cut(s)	258, 565, 667
BstMAI	GTCTC	4 cut(s)	113, 505, 618, 919
BstMBI	GATC	3 cut(s)	255, 562, 664
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 89, 197, 230, 773
BstNI	CCWGG	7 cut(s)	64, 338, 496, 587, 704, 885, 897
BstNSI	RCATGY	3 cut(s)	604, 674, 682
BstSCI	CCNGG	9 cut(s)	62, 104, 156, 336, 494, 585, 702, 883, 895
BstSLI	GKGCMC	1 cut(s)	678
BstUI	CGCG	2 cut(s)	567, 640
BstV1I	GCAGC	5 cut(s)	368, 477, 480, 779, 839
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BsuRI	GGCC	4 cut(s)	56, 74, 594, 875
BtgI	CCRYGG	3 cut(s)	195, 531, 638
BtgZI	GCGATG	2 cut(s)	205, 268
BtsCI	GGATG	1 cut(s)	541
BtsI	GCAGTG	3 cut(s)	175, 376, 595
BtsIMutI	CAGTG	5 cut(s)	175, 376, 595, 651, 935
Cac8I	GCNNGC	5 cut(s)	9, 351, 453, 602, 754
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	54, 711
Cfr42I	CCGCGG	1 cut(s)	641
CseI	GACGC	2 cut(s)	41, 522
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	7 cut(s)	346, 532, 601, 671, 679, 715, 820
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	3 cut(s)	376, 658, 690
DinI	GGCGCC	1 cut(s)	300
DpnI	GATC	3 cut(s)	257, 564, 666
DpnII	GATC	3 cut(s)	255, 562, 664
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	653
EarI	CTCTTC	1 cut(s)	653
Eco130I	CCWWGG	1 cut(s)	531
Eco31I	GGTCTC	2 cut(s)	113, 618
Eco47I	GGWCC	1 cut(s)	711
Eco57I	CTGAAG	1 cut(s)	330
Eco72I	CACGTG	1 cut(s)	402
EcoRII	CCWGG	7 cut(s)	62, 336, 494, 585, 702, 883, 895
EcoT14I	CCWWGG	1 cut(s)	531
EgeI	GGCGCC	1 cut(s)	300
EheI	GGCGCC	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	531
Esp3I	CGTCTC	1 cut(s)	505
FaeI	CATG	7 cut(s)	349, 535, 604, 674, 682, 718, 823
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	7 cut(s)	345, 531, 600, 670, 678, 714, 819
FauI	CCCGC	1 cut(s)	97
FokI	GGATG	1 cut(s)	548
FspBI	CTAG	2 cut(s)	350, 909
GlaI	GCGC	1 cut(s)	300
GsaI	CCCAGC	1 cut(s)	736
GsuI	CTGGAG	2 cut(s)	517, 906
HaeII	RGCGCY	1 cut(s)	302
HaeIII	GGCC	4 cut(s)	56, 74, 594, 875
HapII	CCGG	6 cut(s)	71, 105, 140, 157, 171, 213
HgaI	GACGC	2 cut(s)	41, 522
HhaI	GCGC	1 cut(s)	301
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	7 cut(s)	349, 535, 604, 674, 682, 718, 823
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HincII	GTYRAC	2 cut(s)	102, 268
HindII	GTYRAC	2 cut(s)	102, 268
HinfI	GANTC	5 cut(s)	15, 44, 269, 427, 499
HpaI	GTTAAC	1 cut(s)	102
HpaII	CCGG	6 cut(s)	71, 105, 140, 157, 171, 213
HphI	GGTGA	3 cut(s)	52, 163, 197
Hpy166II	GTNNAC	4 cut(s)	102, 154, 268, 676
Hpy188I	TCNGA	3 cut(s)	310, 661, 919
Hpy188III	TCNNGA	4 cut(s)	38, 503, 739, 951
Hpy8I	GTNNAC	4 cut(s)	102, 154, 268, 676
Hpy99I	CGWCG	5 cut(s)	32, 35, 44, 119, 266
HpyAV	CCTTC	3 cut(s)	434, 584, 817
HpyCH4III	ACNGT	4 cut(s)	124, 544, 799, 939
HpyCH4IV	ACGT	3 cut(s)	264, 401, 408
HpyCH4V	TGCA	6 cut(s)	580, 600, 676, 752, 776, 835
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 89, 197, 230, 773
HpyF3I	CTNAG	3 cut(s)	376, 658, 690
HpySE526I	ACGT	3 cut(s)	264, 401, 408
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	7 cut(s)	349, 535, 604, 674, 682, 718, 823
HspAI	GCGC	1 cut(s)	299
KasI	GGCGCC	1 cut(s)	298
KpnI	GGTACC	1 cut(s)	345
KspAI	GTTAAC	1 cut(s)	102
KspI	CCGCGG	1 cut(s)	641
Kzo9I	GATC	3 cut(s)	255, 562, 664
LmnI	GCTCC	1 cut(s)	533
Lsp1109I	GCAGC	5 cut(s)	368, 477, 480, 779, 839
LweI	GCATC	2 cut(s)	676, 739
MaeI	CTAG	2 cut(s)	350, 909
MaeII	ACGT	3 cut(s)	264, 401, 408
MaeIII	GTNAC	3 cut(s)	58, 108, 642
MalI	GATC	3 cut(s)	257, 564, 666
MboI	GATC	3 cut(s)	255, 562, 664
MboII	GAAGA	2 cut(s)	250, 640
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	678
MluCI	AATT	1 cut(s)	320
Mly113I	GGCGCC	1 cut(s)	299
MlyI	GAGTC	4 cut(s)	9, 53, 263, 508
MmeI	TCCRAC	1 cut(s)	297
MroXI	GAANNNNTTC	1 cut(s)	544
MseI	TTAA	1 cut(s)	101
MslI	CAYNNNNRTG	2 cut(s)	605, 681
MspA1I	CMGCKG	3 cut(s)	359, 640, 830
MspI	CCGG	6 cut(s)	71, 105, 140, 157, 171, 213
MspR9I	CCNGG	9 cut(s)	64, 106, 158, 338, 496, 587, 704, 885, 897
Mva1269I	GAATGC	1 cut(s)	897
MvaI	CCWGG	7 cut(s)	64, 338, 496, 587, 704, 885, 897
MvnI	CGCG	2 cut(s)	567, 640
MwoI	GCNNNNNNNGC	5 cut(s)	80, 89, 197, 230, 773
NarI	GGCGCC	1 cut(s)	299
NciI	CCSGG	2 cut(s)	106, 158
NcoI	CCATGG	1 cut(s)	531
NdeII	GATC	3 cut(s)	255, 562, 664
NheI	GCTAGC	1 cut(s)	349
NlaIII	CATG	7 cut(s)	349, 535, 604, 674, 682, 718, 823
NlaIV	GGNNCC	6 cut(s)	69, 300, 343, 445, 529, 712
NmeAIII	GCCGAG	2 cut(s)	162, 209
NmuCI	GTSAC	2 cut(s)	58, 108
NspI	RCATGY	3 cut(s)	604, 674, 682
PaeI	GCATGC	1 cut(s)	604
PasI	CCCWGGG	1 cut(s)	337
PciI	ACATGT	2 cut(s)	670, 678
PcsI	WCGNNNNNNNCGW	4 cut(s)	36, 39, 120, 291
PctI	GAATGC	1 cut(s)	897
PdmI	GAANNNNTTC	1 cut(s)	544
PfeI	GAWTC	1 cut(s)	427
PflFI	GACNNNGTC	1 cut(s)	860
PflMI	CCANNNNNTGG	1 cut(s)	402
PleI	GAGTC	4 cut(s)	9, 52, 263, 507
PluTI	GGCGCC	1 cut(s)	302
PmaCI	CACGTG	1 cut(s)	402
PmlI	CACGTG	1 cut(s)	402
PpsI	GAGTC	4 cut(s)	9, 52, 263, 507
Ppu21I	YACGTR	1 cut(s)	402
PscI	ACATGT	2 cut(s)	670, 678
Psp6I	CCWGG	7 cut(s)	62, 336, 494, 585, 702, 883, 895
PspCI	CACGTG	1 cut(s)	402
PspFI	CCCAGC	1 cut(s)	732
PspGI	CCWGG	7 cut(s)	62, 336, 494, 585, 702, 883, 895
PspN4I	GGNNCC	6 cut(s)	69, 300, 343, 445, 529, 712
PspPI	GGNCC	2 cut(s)	54, 711
PsrI	GAACNNNNNNTAC	2 cut(s)	627, 659
PsuI	RGATCY	1 cut(s)	255
PsyI	GACNNNGTC	1 cut(s)	860
PvuII	CAGCTG	2 cut(s)	359, 830
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
RseI	CAYNNNNRTG	2 cut(s)	605, 681
SacII	CCGCGG	1 cut(s)	641
SaqAI	TTAA	1 cut(s)	101
Sau3AI	GATC	3 cut(s)	255, 562, 664
Sau96I	GGNCC	2 cut(s)	54, 711
SchI	GAGTC	4 cut(s)	9, 53, 263, 508
ScrFI	CCNGG	9 cut(s)	64, 106, 158, 338, 496, 587, 704, 885, 897
SduI	GDGCHC	1 cut(s)	678
SfaNI	GCATC	2 cut(s)	676, 739
SfoI	GGCGCC	1 cut(s)	300
Sfr303I	CCGCGG	1 cut(s)	641
SgrBI	CCGCGG	1 cut(s)	641
SinI	GGWCC	1 cut(s)	711
SmiMI	CAYNNNNRTG	2 cut(s)	605, 681
SmlI	CTYRAG	1 cut(s)	739
SmoI	CTYRAG	1 cut(s)	739
SphI	GCATGC	1 cut(s)	604
Sse9I	AATT	1 cut(s)	320
SsiI	CCGC	8 cut(s)	90, 200, 225, 302, 354, 567, 638, 640
SspDI	GGCGCC	1 cut(s)	298
SspMI	CTAG	2 cut(s)	350, 909
StyD4I	CCNGG	9 cut(s)	62, 104, 156, 336, 494, 585, 702, 883, 895
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	4 cut(s)	124, 544, 799, 939
TaiI	ACGT	3 cut(s)	267, 404, 411
TaqI	TCGA	8 cut(s)	27, 114, 261, 294, 425, 555, 747, 880
TasI	AATT	1 cut(s)	320
TauI	GCSGC	5 cut(s)	203, 227, 304, 356, 570
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	5 cut(s)	182, 376, 602, 658, 942
TseFI	GTSAC	2 cut(s)	58, 108
TseI	GCWGC	5 cut(s)	356, 465, 468, 767, 827
Tsp45I	GTSAC	2 cut(s)	58, 108
TspDTI	ATGAA	2 cut(s)	17, 836
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	5 cut(s)	182, 376, 602, 658, 942
Tth111I	GACNNNGTC	1 cut(s)	860
Van91I	CCANNNNNTGG	1 cut(s)	402
VneI	GTGCAC	1 cut(s)	674
VpaK11BI	GGWCC	1 cut(s)	711
XceI	RCATGY	3 cut(s)	604, 674, 682
XmnI	GAANNNNTTC	1 cut(s)	544
XspI	CTAG	2 cut(s)	350, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.