Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Reverse (-)

34241 .. 34618

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G000010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCAGACTGAGGGAATAAAAGGAGATAGGGTGACAAAGGAGGAGGTTGGATCTGTCTGCGGATATCTAGGAGCTCTTGATCTTGCAAAGTGGACCCATACTTATATCGAAAAAAATGAAATTAACTGTGACATGCGGCTCGGGACAGCTTTGTTTGACATGTTTGGTAGATGTGGAGACCCTCAAAGTGCAATGAAGGTGTTCGATAACATGGCAAGAAGAGATGTTTCTGCTTGGACAGCAGCCATTGGAGCAATGGTTATGCAAGGAAATGGGGAGCGAGCTCTAGAGCTTTTTGATGACATGCTTTGTGGGGTGAAACCAGATAAAGTAGTCTTTGTGGCAGTACTAAGTACTAACAGCATACAACCATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

125

Amino Acids

13.76

Weight (kDa)

4.9

Isoelectric Point (pI)

16.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	74 - 114	8.3e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	60, 136
AclWI	GGATC	1 cut(s)	58
AfaI	GTAC	2 cut(s)	348, 355
AflIII	ACRYGT	1 cut(s)	159
AluBI	AGCT	4 cut(s)	74, 149, 284, 292
AluI	AGCT	4 cut(s)	74, 149, 284, 292
Alw21I	GWGCWC	2 cut(s)	76, 286
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	58
Ama87I	CYCGRG	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	242
Asp700I	GAANNNNTTC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	2 cut(s)	43, 328
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	93
BanII	GRGCYC	2 cut(s)	76, 286
Bbv12I	GWGCWC	2 cut(s)	76, 286
BbvI	GCAGC	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	2 cut(s)	68, 287
BisI	GCNGC	2 cut(s)	137, 243
BlsI	GCNGC	2 cut(s)	138, 244
BmcAI	AGTACT	2 cut(s)	348, 355
Bme18I	GGWCC	1 cut(s)	93
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	171
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 243, 273
Bse3DI	GCAATG	2 cut(s)	198, 261
BseMI	GCAATG	2 cut(s)	198, 261
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	254
BsiHKAI	GWGCWC	2 cut(s)	76, 286
BsiHKCI	CYCGRG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	157
Bso31I	GGTCTC	1 cut(s)	171
BsoBI	CYCGRG	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	76, 286
Bsp143I	GATC	2 cut(s)	50, 79
BspACI	CCGC	2 cut(s)	60, 136
BspLI	GGNNCC	1 cut(s)	95
BspPI	GGATC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	171
BsrDI	GCAATG	2 cut(s)	198, 261
BssMI	GATC	2 cut(s)	50, 79
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	2 cut(s)	9, 350
BstKTI	GATC	2 cut(s)	53, 82
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	2 cut(s)	50, 79
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 251
BstNSI	RCATGY	3 cut(s)	136, 163, 307
BstV1I	GCAGC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	347, 354
CviAII	CATG	4 cut(s)	133, 160, 211, 304
CviJI	RGCY	6 cut(s)	74, 139, 149, 245, 284, 292
CviKI_1	RGCY	6 cut(s)	74, 139, 149, 245, 284, 292
CviQI	GTAC	2 cut(s)	347, 354
DdeI	CTNAG	2 cut(s)	9, 350
DpnI	GATC	2 cut(s)	52, 81
DpnII	GATC	2 cut(s)	50, 79
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Ecl136II	GAGCTC	2 cut(s)	74, 284
Eco24I	GRGCYC	2 cut(s)	76, 286
Eco31I	GGTCTC	1 cut(s)	171
Eco32I	GATATC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	93
Eco53kI	GAGCTC	2 cut(s)	74, 284
Eco88I	CYCGRG	1 cut(s)	140
EcoICRI	GAGCTC	2 cut(s)	74, 284
EcoRV	GATATC	1 cut(s)	65
EcoT38I	GRGCYC	2 cut(s)	76, 286
FaeI	CATG	4 cut(s)	136, 163, 214, 307
FaiI	YATR	9 cut(s)	99, 105, 134, 161, 212, 263, 305, 365, 373
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	4 cut(s)	132, 159, 210, 303
Fnu4HI	GCNGC	2 cut(s)	137, 243
FriOI	GRGCYC	2 cut(s)	76, 286
Fsp4HI	GCNGC	2 cut(s)	137, 243
FspBI	CTAG	2 cut(s)	68, 287
GluI	GCNGC	2 cut(s)	137, 243
Hin1II	CATG	4 cut(s)	136, 163, 214, 307
HphI	GGTGA	2 cut(s)	43, 328
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188III	TCNNGA	3 cut(s)	77, 142, 287
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4V	TGCA	4 cut(s)	4, 86, 191, 265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 251
HpyF3I	CTNAG	2 cut(s)	9, 350
Hsp92II	CATG	4 cut(s)	136, 163, 214, 307
Kzo9I	GATC	2 cut(s)	50, 79
LmnI	GCTCC	3 cut(s)	71, 251, 277
LpnPI	CCDG	1 cut(s)	336
Lsp1109I	GCAGC	1 cut(s)	254
MaeI	CTAG	2 cut(s)	68, 287
MaeIII	GTNAC	2 cut(s)	31, 128
MalI	GATC	2 cut(s)	52, 81
MboI	GATC	2 cut(s)	50, 79
MboII	GAAGA	1 cut(s)	231
MflI	RGATCY	1 cut(s)	50
MhlI	GDGCHC	2 cut(s)	76, 286
MluCI	AATT	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	4 cut(s)	4, 34, 37, 192
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	239, 251
NdeII	GATC	2 cut(s)	50, 79
NlaIII	CATG	4 cut(s)	136, 163, 214, 307
NlaIV	GGNNCC	1 cut(s)	95
NmuCI	GTSAC	2 cut(s)	31, 128
NspI	RCATGY	3 cut(s)	136, 163, 307
PciI	ACATGT	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	138, 244
PscI	ACATGT	1 cut(s)	159
Psp124BI	GAGCTC	2 cut(s)	76, 286
PspN4I	GGNNCC	1 cut(s)	95
PspPI	GGNCC	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	2 cut(s)	348, 355
RsaNI	GTAC	2 cut(s)	347, 354
SacI	GAGCTC	2 cut(s)	76, 286
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	137, 243
Sau3AI	GATC	2 cut(s)	50, 79
Sau96I	GGNCC	1 cut(s)	93
ScaI	AGTACT	2 cut(s)	348, 355
SduI	GDGCHC	2 cut(s)	76, 286
SetI	ASST	6 cut(s)	48, 76, 151, 201, 286, 294
SinI	GGWCC	1 cut(s)	93
Sse9I	AATT	1 cut(s)	120
SsiI	CCGC	2 cut(s)	60, 136
SspMI	CTAG	2 cut(s)	68, 287
SstI	GAGCTC	2 cut(s)	76, 286
TaaI	ACNGT	1 cut(s)	128
TaqI	TCGA	2 cut(s)	108, 204
TasI	AATT	1 cut(s)	120
TatI	WGTACW	2 cut(s)	346, 353
TauI	GCSGC	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseFI	GTSAC	2 cut(s)	31, 128
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	2 cut(s)	31, 128
TspDTI	ATGAA	2 cut(s)	132, 209
VpaK11BI	GGWCC	1 cut(s)	93
XbaI	TCTAGA	1 cut(s)	286
XceI	RCATGY	3 cut(s)	136, 163, 307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	2 cut(s)	68, 287
ZrmI	AGTACT	2 cut(s)	348, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.