Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005233.1

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Forward (+)

15346 .. 17339

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005233.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgcagactgagggaataaaagcagatagggtgaccatggtggaggtgttcaagaacatgtcaataagagatgtttctgcttggacagcagccattggagcaatggccatggaaggaaatgaggagcgagctctagagctttttgatgacatgcttaagcaagcggtgaaaccagataaagtagtctttgtggcagtaccagcagtgtgtagccatgttggtcttccaggaacaagggcggaacgttttcatgtcaacgcagtcgatgaactggtcaagatacttgaatgcagaaaatcaaaaaggcaggaggttagagtggttttctacaaggtggatccatcagatgtacggcaccaaagagttgctttcggtgacgcatttgctacacttgatcaatggaaatacaaggatagcatgggcaaatggaggaaggctcttgaggaagcagcagatttgtctggatggcctttcaaggatggcgagtatgtctttaacccctccactagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

170

Amino Acids

19.22

Weight (kDa)

6.32

Isoelectric Point (pI)

25.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	354
AciI	CCGC	2 cut(s)	164, 239
AclI	AACGTT	1 cut(s)	244
AclWI	GGATC	2 cut(s)	332, 345
AcoI	YGGCCR	1 cut(s)	105
AfaI	GTAC	2 cut(s)	198, 351
AflII	CTTAAG	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	3 cut(s)	52, 287, 475
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	3 cut(s)	131, 139, 510
AluI	AGCT	3 cut(s)	131, 139, 510
Alw21I	GWGCWC	1 cut(s)	133
AlwI	GGATC	2 cut(s)	332, 345
AoxI	GGCC	2 cut(s)	105, 467
ApeKI	GCWGC	2 cut(s)	89, 449
Asp700I	GAANNNNTTC	1 cut(s)	246
AsuHPI	GGTGA	3 cut(s)	43, 178, 386
BalI	TGGCCA	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	2 cut(s)	101, 461
BccI	CCATC	3 cut(s)	349, 459, 473
BceAI	ACGGC	1 cut(s)	368
BciT130I	CCWGG	1 cut(s)	228
BclI	TGATCA	1 cut(s)	394
BfaI	CTAG	3 cut(s)	134, 507, 511
BfrI	CTTAAG	1 cut(s)	155
BisI	GCNGC	2 cut(s)	90, 450
BlsI	GCNGC	2 cut(s)	91, 451
Bme1390I	CCNGG	1 cut(s)	228
BmiI	GGNNCC	2 cut(s)	339, 356
BmrFI	CCNGG	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	215
BplI	GAGNNNNNCTC	2 cut(s)	421, 453
BpuEI	CTTGAG	1 cut(s)	461
BsaJI	CCNNGG	2 cut(s)	36, 108
Bse1I	ACTGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	36, 108
BseGI	GGATG	2 cut(s)	470, 484
BseMI	GCAATG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	2 cut(s)	101, 461
BshFI	GGCC	2 cut(s)	107, 469
BshNI	GGYRCC	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	133
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	107, 469
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	337, 394
Bsp19I	CCATGG	2 cut(s)	36, 108
BspACI	CCGC	2 cut(s)	164, 239
BspANI	GGCC	2 cut(s)	107, 469
BspLI	GGNNCC	2 cut(s)	339, 356
BspPI	GGATC	2 cut(s)	332, 345
BspT107I	GGYRCC	1 cut(s)	354
BspTI	CTTAAG	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	2 cut(s)	36, 108
BssMI	GATC	2 cut(s)	337, 394
BssT1I	CCWWGG	2 cut(s)	36, 108
Bst2UI	CCWGG	1 cut(s)	228
BstAFI	CTTAAG	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	129, 162
BstDEI	CTNAG	1 cut(s)	9
BstDSI	CCRYGG	2 cut(s)	36, 108
BstEII	GGTNACC	1 cut(s)	31
BstF5I	GGATG	2 cut(s)	470, 484
BstKTI	GATC	2 cut(s)	340, 397
BstMBI	GATC	2 cut(s)	337, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 98, 200
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	2 cut(s)	61, 154
BstPI	GGTNACC	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	101, 461
BstV2I	GAAGAC	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	107, 469
BtgI	CCRYGG	2 cut(s)	36, 108
BtsCI	GGATG	2 cut(s)	470, 484
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	2 cut(s)	129, 162
CseI	GACGC	1 cut(s)	386
Csp6I	GTAC	2 cut(s)	197, 350
CviAII	CATG	7 cut(s)	37, 58, 109, 151, 215, 251, 418
CviJI	RGCY	8 cut(s)	92, 107, 131, 139, 213, 437, 469, 510
CviKI_1	RGCY	8 cut(s)	92, 107, 131, 139, 213, 437, 469, 510
CviQI	GTAC	2 cut(s)	197, 350
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	2 cut(s)	339, 396
DpnII	GATC	2 cut(s)	337, 394
EaeI	YGGCCR	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	131
Eco130I	CCWWGG	2 cut(s)	36, 108
Eco24I	GRGCYC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	131
Eco91I	GGTNACC	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	131
EcoO65I	GGTNACC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	2 cut(s)	36, 108
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	2 cut(s)	36, 108
FaeI	CATG	7 cut(s)	40, 61, 112, 154, 218, 254, 421
FaiI	YATR	8 cut(s)	38, 59, 110, 152, 216, 252, 419, 489
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FatI	CATG	7 cut(s)	36, 57, 108, 150, 214, 250, 417
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	2 cut(s)	90, 450
FokI	GGATG	2 cut(s)	477, 491
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	2 cut(s)	90, 450
FspBI	CTAG	3 cut(s)	134, 507, 511
GluI	GCNGC	2 cut(s)	90, 450
HaeIII	GGCC	2 cut(s)	107, 469
HgaI	GACGC	1 cut(s)	386
Hin1II	CATG	7 cut(s)	40, 61, 112, 154, 218, 254, 421
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HphI	GGTGA	3 cut(s)	43, 178, 386
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	5 cut(s)	52, 134, 277, 440, 462
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	107, 427
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	2 cut(s)	4, 291
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 98, 200
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	7 cut(s)	40, 61, 112, 154, 218, 254, 421
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	337, 394
LmnI	GCTCC	2 cut(s)	98, 124
LpnPI	CCDG	7 cut(s)	186, 213, 213, 240, 257, 293, 447
Lsp1109I	GCAGC	2 cut(s)	101, 461
MaeI	CTAG	3 cut(s)	134, 507, 511
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	2 cut(s)	31, 374
MalI	GATC	2 cut(s)	339, 396
MboI	GATC	2 cut(s)	337, 394
MboII	GAAGA	1 cut(s)	215
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	133
MlsI	TGGCCA	1 cut(s)	107
MluNI	TGGCCA	1 cut(s)	107
MnlI	CCTC	7 cut(s)	4, 37, 115, 304, 423, 436, 511
Mox20I	TGGCCA	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	2 cut(s)	156, 495
Msp20I	TGGCCA	1 cut(s)	107
MspCI	CTTAAG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	3 cut(s)	86, 98, 200
NcoI	CCATGG	2 cut(s)	36, 108
NdeII	GATC	2 cut(s)	337, 394
NlaIII	CATG	7 cut(s)	40, 61, 112, 154, 218, 254, 421
NlaIV	GGNNCC	2 cut(s)	339, 356
NmuCI	GTSAC	2 cut(s)	31, 374
NspI	RCATGY	2 cut(s)	61, 154
PciI	ACATGT	1 cut(s)	57
PctI	GAATGC	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	246
PfoI	TCCNGGA	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	91, 451
PscI	ACATGT	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	133
Psp1406I	AACGTT	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	226
PspEI	GGTNACC	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	339, 356
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	2 cut(s)	198, 351
RsaNI	GTAC	2 cut(s)	197, 350
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	2 cut(s)	156, 495
SatI	GCNGC	2 cut(s)	90, 450
Sau3AI	GATC	2 cut(s)	337, 394
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	7 cut(s)	48, 133, 141, 247, 315, 336, 512
SmlI	CTYRAG	2 cut(s)	155, 440
SmoI	CTYRAG	2 cut(s)	155, 440
SsiI	CCGC	2 cut(s)	164, 239
SspMI	CTAG	3 cut(s)	134, 507, 511
SstI	GAGCTC	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	2 cut(s)	36, 108
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	1 cut(s)	264
Tru1I	TTAA	2 cut(s)	156, 495
Tru9I	TTAA	2 cut(s)	156, 495
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	2 cut(s)	31, 374
TseI	GCWGC	2 cut(s)	89, 449
Tsp45I	GTSAC	2 cut(s)	31, 374
TspDTI	ATGAA	2 cut(s)	239, 282
TspRI	CASTG	1 cut(s)	210
Vha464I	CTTAAG	1 cut(s)	155
XbaI	TCTAGA	1 cut(s)	133
XceI	RCATGY	2 cut(s)	61, 154
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	3 cut(s)	134, 507, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.