Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Reverse (-)

18297115 .. 18297889

Gene Structure 775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55823

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTGGTTCAGGCTATTGGGATTTCTGTGAAGGGGGTTCAGCTCCATGGTTCGCTTGTGAAGATGGGTTTGGAGGAAGCTGTGTTTATTGGCAATTTTTTGATTCATTTCTACGCAGAATGTGGGCACTTGGATTATGCCCAGAAGGTGCTGTTTCTTTGTTTTTCCGAGATGGTGGCTAAGCACAATTCGGTGACTCTGGTGTGTGTCATTTCTGCTTACGCAAAGTTGAAGGATGAGCGCTTAACTTGGGAGTCTGAACTGAAGAGTAATATGCTTATGTTTGAGGAAGCAATTGAACTTTTCCGGGTGATGCGGACTGAGGGAATAAAAGGAGATAGGGTGACCATGGTGGAGGTTGCATCTACCTGCGGATATCTAGGAGCTCTTGATCTTGCAAAGTTGACTCCTGCTTATATCCAGAATAAAAAACACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

146

Amino Acids

16.33

Weight (kDa)

6.51

Isoelectric Point (pI)

27.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	377
AciI	CCGC	2 cut(s)	316, 372
AcuI	CTGAAG	1 cut(s)	284
AfeI	AGCGCT	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	232, 299
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	3 cut(s)	43, 80, 386
AluI	AGCT	3 cut(s)	43, 80, 386
Alw21I	GWGCWC	1 cut(s)	388
Aor51HI	AGCGCT	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	243
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	3 cut(s)	205, 322, 355
BaeGI	GKGCMC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	388
BccI	CCATC	2 cut(s)	58, 166
BcnI	CCSGG	1 cut(s)	308
BfaI	CTAG	1 cut(s)	380
BfoI	RGCGCY	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	377
BlpI	GCTNAGC	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	308
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	2 cut(s)	303, 371
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuMI	CCSGG	1 cut(s)	308
BsaJI	CCNNGG	2 cut(s)	46, 348
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
BseDI	CCNNGG	2 cut(s)	46, 348
BseGI	GGATG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	312
BseSI	GKGCMC	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	307
Bsp1286I	GDGCHC	2 cut(s)	129, 388
Bsp143I	GATC	1 cut(s)	391
Bsp1720I	GCTNAGC	1 cut(s)	180
Bsp19I	CCATGG	2 cut(s)	46, 348
BspACI	CCGC	2 cut(s)	316, 372
BspCNI	CTCAG	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	377
BssECI	CCNNGG	2 cut(s)	46, 348
BssMI	GATC	1 cut(s)	391
BssT1I	CCWWGG	2 cut(s)	46, 348
Bst6I	CTCTTC	1 cut(s)	260
BstDEI	CTNAG	2 cut(s)	180, 321
BstDSI	CCRYGG	2 cut(s)	46, 348
BstEII	GGTNACC	1 cut(s)	343
BstF5I	GGATG	1 cut(s)	241
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	1 cut(s)	394
BstMBI	GATC	1 cut(s)	391
BstPI	GGTNACC	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	306
BstSLI	GKGCMC	1 cut(s)	129
BtgI	CCRYGG	2 cut(s)	46, 348
BtsCI	GGATG	1 cut(s)	241
BveI	ACCTGC	1 cut(s)	377
CfoI	GCGC	1 cut(s)	243
CviAII	CATG	2 cut(s)	47, 349
CviJI	RGCY	5 cut(s)	14, 43, 80, 179, 386
CviKI_1	RGCY	5 cut(s)	14, 43, 80, 179, 386
DdeI	CTNAG	2 cut(s)	180, 321
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	386
Eco130I	CCWWGG	2 cut(s)	46, 348
Eco24I	GRGCYC	1 cut(s)	388
Eco32I	GATATC	1 cut(s)	377
Eco47III	AGCGCT	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	284
Eco91I	GGTNACC	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	386
EcoO65I	GGTNACC	1 cut(s)	343
EcoRV	GATATC	1 cut(s)	377
EcoT14I	CCWWGG	2 cut(s)	46, 348
EcoT38I	GRGCYC	1 cut(s)	388
ErhI	CCWWGG	2 cut(s)	46, 348
FaeI	CATG	2 cut(s)	50, 352
FaiI	YATR	6 cut(s)	48, 138, 275, 281, 350, 417
FatI	CATG	2 cut(s)	46, 348
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	388
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	244
HapII	CCGG	1 cut(s)	307
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	50, 352
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	4 cut(s)	103, 196, 254, 406
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	3 cut(s)	205, 322, 355
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188I	TCNGA	2 cut(s)	169, 259
Hpy188III	TCNNGA	2 cut(s)	389, 421
Hpy8I	GTNNAC	1 cut(s)	405
HpyAV	CCTTC	3 cut(s)	25, 139, 226
HpyCH4V	TGCA	2 cut(s)	362, 398
HpyF3I	CTNAG	2 cut(s)	180, 321
Hsp92II	CATG	2 cut(s)	50, 352
HspAI	GCGC	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	2 cut(s)	48, 383
LpnPI	CCDG	6 cut(s)	155, 185, 320, 382, 423, 434
LweI	GCATC	2 cut(s)	303, 371
MaeI	CTAG	1 cut(s)	380
MaeIII	GTNAC	2 cut(s)	193, 343
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	2 cut(s)	73, 277
MfeI	CAATTG	2 cut(s)	294, 436
MhlI	GDGCHC	2 cut(s)	129, 388
MluCI	AATT	4 cut(s)	94, 187, 294, 436
MlyI	GAGTC	3 cut(s)	190, 263, 400
MnlI	CCTC	4 cut(s)	67, 280, 316, 349
MseI	TTAA	1 cut(s)	245
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	1 cut(s)	308
MunI	CAATTG	2 cut(s)	294, 436
NciI	CCSGG	1 cut(s)	308
NcoI	CCATGG	2 cut(s)	46, 348
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	2 cut(s)	50, 352
NmuCI	GTSAC	2 cut(s)	193, 343
PfeI	GAWTC	1 cut(s)	103
PleI	GAGTC	3 cut(s)	190, 262, 400
PpsI	GAGTC	3 cut(s)	190, 262, 400
Psp124BI	GAGCTC	1 cut(s)	388
PspEI	GGTNACC	1 cut(s)	343
SacI	GAGCTC	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	245
Sau3AI	GATC	1 cut(s)	391
SchI	GAGTC	3 cut(s)	190, 263, 400
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	2 cut(s)	129, 388
SetI	ASST	6 cut(s)	45, 82, 150, 360, 371, 388
SfaNI	GCATC	2 cut(s)	303, 371
Sse9I	AATT	4 cut(s)	94, 187, 294, 436
SsiI	CCGC	2 cut(s)	316, 372
SspMI	CTAG	1 cut(s)	380
SstI	GAGCTC	1 cut(s)	388
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	2 cut(s)	46, 348
TasI	AATT	4 cut(s)	94, 187, 294, 436
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TseFI	GTSAC	2 cut(s)	193, 343
Tsp45I	GTSAC	2 cut(s)	193, 343
TspDTI	ATGAA	1 cut(s)	95
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.