Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Reverse (-)

24260768 .. 24265881

Gene Structure 5114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0232600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2487 bp

ATGGCCACCATTCCCACCACAAACGCCTTCCTCGCCACACCAACCAAAACCCCATCGGACAAATCATCCCACTCCCGGAAACACCCCCACCCCAATTCCACCGCCGCAAACGACATGTCGTCCTTCTCCTCCCTCTCCAACTCCAAGTCCCGGTTCGAGGCCTACAACCGCCTCCAAGCAGCCACGGTGGCCTTCGGCGAGAAGCTCCCGATCCCCGAGATCGTCGCCCTCGGCGGCCAATCCGACGGCAAGAGCTCCCTCCTCGAAGCTCTCTTAGGGTTTCGATTCAATGTCCGCGAGGTCGAGATGGGGACTCGTAGACCTCTCATTCTCCAGATGATCCACGACCCCACCGCTCTCGAGCCCCGGTGCCGATTCCAGGAGGAGGATTCTGAAGAATATGGAAGTCCGATCGTGTTGCCATCTGCAATTGCGGATGTTATAAAGTCCAGAACAGATGGGCTTTTGAAGAAGACGAAAACTGCAGTTTCTTCCAAGCCAATTGTGATGAGAGCGGAATATGCTCATTGTCCAAATCTAACAATTATTGATACTCCAGGCTTTGTTCTTAAGGCGAAGAAAGGAGAACCTGAAAGGACACCTGAAGAAATTCTTTCGATGGTGAAGTCATTGGCTAGTCCTCCCCATCGCATTCTCCTCTTCCTTCAACAAAGTAGTGTGGAGTGGTGCTCATCCTTGTGGTTGGATTCCATTCGTGAAATTGATCCAACATTTAAAAGGACTATAATTGTTGTCTCGAAATTTGATAATCGTCTAAAGGAATTTTCTGACCGGTGGGAAGTGGACCGCTATCTGAGTGCAAGTGGTTACCTTGGAGATAACACTCACCCATATTTTGTTGCCTTGCCAAAGGATAGGAATACCATTTCAAATGACGAGTTCCGCAAGCAAATATCTCAGGTAGACTCAGAAGTTCTACGACATCTGCGTGAAGGTGTGAAGGGAGGATTTGATGAAGAAAAGTTTAGGCCTTACATTGGTTTTGGCTCTTTGAGAGAATATTTGGAGTCTGAACTACAAAAAAGGTATAAAGAAGCTGCCCCAGCTACTCTTGCTTTGCTTGAAGAGCGCTGCAGTCAAGTCACTACCGAACTAGCCACGATGGATTCAAAAATACAGGCCACCTCTGATGTTTCTCAGCTTAGAAGATCTGCAATGTTGTACACAGCTTCTATAAGCAATCATGTGGGGGCTTTGATTGATGGAGCAGCAGATCCTGCCCCCGAGCAATGGGGAAAAACAACTTTTGATGAGCGGTCAGAAAGTGGTATTGGGGGTTGGCCTGGTGTTACAGCAGATATAAGGCCTCCCAATGCTACTCTTCGACTGTATGGAGGAGCTGCATTTGAAAGGGTGATGCATGAATTCCACTGTGCTGCATATTCAATTGAATGCCCTCCAGTGTCGAGGGAGAAGGTAGCAAATATACTACTTGCCCATGCTAGCAGAGGTGGGGGTAGAGGGGTGACAGAGGCAGCTGCAGAGATTGCACGTGCTGCTGCCCGATCATGGCTTGCTCCTCTTCTTGACACTGCATGTGATCGGCTTTCTTTTGTTTTGGGAAATCTCTTTGAGCTTGCTCTAGAACGGACTCGCTACCGTGATTCAGAAAATGGGAGGAAATCAGGAAATATGGATGGGTATGTTGGTTTTCATGCTGCTCTAAGGCAGGCTTACAATCGCTTTGTAAAAGATCTATCTAAACAGTGCAAGCAACTAGTCCGCCACCACCTGGACTCGGTTACAAGTCCATACTCATTGGTTGGTTATGAGAATGATTTCCAAGGAGGCTATGGCTCCAGTGCAACCTCTTTTGTCAGATCTAACCAATCCTCAGTCAATTCATTTTTACTAGAGTTGTCTGATGTGACAATGATAGATCAGGAGAATATCCCTCCAGAAAAGAATGCACAGCAAACAACACCAGGAAAAGGTTCAGAGGCCAGAGATTCTCTTCGAGAATGCCAAATGACTGTGCCTGAGACCCCATCACCTGATCAGCCCTGTGATGGTGCTGCAAAGAAGGATCTTGGAAATGGCATTGATATTGGACCCAGAAAGCGGGTATCAAGAATGGCAGGCAATAACAAATATTTTGACAATGTAAGAGCACAAAATGGGGGTGCTCTTCTCTTTGGAAATGGTGATGATGCTTTAAGATCAGGCTCGCCTTATTCAGAAATCTGTTCATCTGCTGCACAGCATTTTGCACGCATACGCGAAGTTCTTGTTGAGAGAAATGTAGCCTCAGCTCTGAATTCTGGGTTCCTAACCCCTTGTCGGGATCGGCTTGTTCTGGCACTTGGTCTGGATTTGTTTGCTGTGAATGATGACAAATTCATGGACATGTTTATTGTCCCTGGTGCCATTGATCTGCTACAAAACGAGCGGCAGTCACTCCAGAAGCGCCAAAAGACACTCCAGTCTTGCTTGACTGAGTTTAAAACTCTTGCTCGAGCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

828

Amino Acids

91.51

Weight (kDa)

6.98

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	74 - 254	8.1e-34	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	443
AasI	GACNNNNNNGTC	1 cut(s)	2443
AccB1I	GGYRCC	2 cut(s)	369, 2384
AccB7I	CCANNNNNTGG	1 cut(s)	1753
AccBSI	CCGCTC	4 cut(s)	356, 515, 1276, 2410
AccI	GTMKAC	2 cut(s)	319, 924
AccII	CGCG	2 cut(s)	297, 2241
AclWI	GGATC	6 cut(s)	205, 334, 719, 1229, 2055, 2313
AcoI	YGGCCR	2 cut(s)	3, 235
AcsI	RAATTY	6 cut(s)	609, 761, 782, 1385, 2278, 2357
AcuI	CTGAAG	2 cut(s)	414, 624
AcvI	CACGTG	1 cut(s)	1514
AfaI	GTAC	1 cut(s)	1184
AfeI	AGCGCT	1 cut(s)	1091
AflII	CTTAAG	1 cut(s)	569
AflIII	ACRYGT	2 cut(s)	114, 2367
AgeI	ACCGGT	1 cut(s)	792
AgsI	TTSAA	9 cut(s)	289, 469, 668, 891, 1085, 1131, 1370, 1407, 1412
AhdI	GACNNNNNGTC	1 cut(s)	118
AhlI	ACTAGT	1 cut(s)	1738
AjnI	CCWGG	6 cut(s)	378, 556, 1303, 1752, 1945, 2380
AjuI	GAANNNNNNNTTGG	4 cut(s)	137, 169, 1275, 1307
Alw21I	GWGCWC	5 cut(s)	257, 692, 2134, 2149, 2482
Alw26I	GTCTC	2 cut(s)	760, 1997
AlwI	GGATC	6 cut(s)	205, 334, 719, 1229, 2055, 2313
AlwNI	CAGNNNCTG	1 cut(s)	1238
Ama87I	CYCGRG	4 cut(s)	215, 359, 1244, 2475
Aor51HI	AGCGCT	1 cut(s)	1091
AoxI	GGCC	9 cut(s)	3, 159, 189, 235, 989, 1140, 1301, 1325, 1962
ApoI	RAATTY	6 cut(s)	609, 761, 782, 1385, 2278, 2357
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AsiGI	ACCGGT	1 cut(s)	792
Asp700I	GAANNNNTTC	3 cut(s)	609, 1799, 1954
AspLEI	GCGC	2 cut(s)	1092, 2430
AspS9I	GGNCC	2 cut(s)	805, 2072
AsuC2I	CCSGG	3 cut(s)	76, 151, 367
AsuHPI	GGTGA	6 cut(s)	634, 839, 1387, 1498, 2004, 2177
AsuNHI	GCTAGC	1 cut(s)	1463
AvaI	CYCGRG	4 cut(s)	215, 359, 1244, 2475
AvaII	GGWCC	2 cut(s)	805, 2072
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	369, 2384
BanII	GRGCYC	2 cut(s)	257, 366
BbrPI	CACGTG	1 cut(s)	1514
BbsI	GAAGAC	1 cut(s)	479
Bbv12I	GWGCWC	5 cut(s)	257, 692, 2134, 2149, 2482
BbvCI	CCTCAGC	1 cut(s)	2269
BceAI	ACGGC	1 cut(s)	262
BcgI	CGANNNNNNTGC	2 cut(s)	400, 434
BciT130I	CCWGG	6 cut(s)	380, 558, 1305, 1754, 1947, 2382
BclI	TGATCA	1 cut(s)	2017
BcnI	CCSGG	3 cut(s)	76, 151, 367
BcoDI	GTCTC	2 cut(s)	760, 1997
BcuI	ACTAGT	1 cut(s)	1738
BfaI	CTAG	6 cut(s)	636, 1115, 1464, 1604, 1739, 1874
BfmI	CTRYAG	3 cut(s)	483, 1093, 1500
BfoI	RGCGCY	2 cut(s)	1093, 2431
BfrI	CTTAAG	1 cut(s)	569
BglI	GCCNNNNNGGC	1 cut(s)	188
BglII	AGATCT	3 cut(s)	1169, 1714, 1841
Bme1390I	CCNGG	9 cut(s)	76, 151, 367, 380, 558, 1305, 1754, 1947, 2382
Bme18I	GGWCC	2 cut(s)	805, 2072
BmeRI	GACNNNNNGTC	1 cut(s)	118
BmeT110I	CYCGRG	4 cut(s)	215, 359, 1244, 2475
BmgT120I	GGNCC	2 cut(s)	805, 2072
BmiI	GGNNCC	5 cut(s)	371, 1819, 2074, 2288, 2386
BmrFI	CCNGG	9 cut(s)	76, 151, 367, 380, 558, 1305, 1754, 1947, 2382
BmsI	GCATC	2 cut(s)	1368, 2161
BmtI	GCTAGC	1 cut(s)	1467
BpiI	GAAGAC	1 cut(s)	479
BplI	GAGNNNNNCTC	2 cut(s)	674, 706
BpmI	CTGGAG	7 cut(s)	317, 540, 1404, 1804, 1902, 2405, 2426
Bpu10I	CCTNAGC	1 cut(s)	2269
BpuMI	CCSGG	3 cut(s)	76, 151, 367
BsaAI	YACGTR	1 cut(s)	1514
BsaI	GGTCTC	1 cut(s)	1997
BsaJI	CCNNGG	6 cut(s)	183, 229, 365, 832, 1804, 2380
BsaWI	WCCGGW	1 cut(s)	792
Bse118I	RCCGGY	1 cut(s)	792
Bse1I	ACTGG	3 cut(s)	1421, 1821, 2443
Bse3DI	GCAATG	2 cut(s)	1182, 1256
BseBI	CCWGG	6 cut(s)	380, 558, 1305, 1754, 1947, 2382
BseDI	CCNNGG	6 cut(s)	183, 229, 365, 832, 1804, 2380
BseGI	GGATG	4 cut(s)	65, 442, 692, 1663
BseMI	GCAATG	2 cut(s)	1182, 1256
BseMII	CTCAG	8 cut(s)	806, 932, 942, 1172, 1869, 1992, 2283, 2448
BseNI	ACTGG	3 cut(s)	1421, 1821, 2443
BseRI	GAGGAG	6 cut(s)	118, 251, 398, 647, 1371, 1530
BseYI	CCCAGC	1 cut(s)	1063
BsgI	GTGCAG	1 cut(s)	2202
Bsh1236I	CGCG	2 cut(s)	297, 2241
Bsh1285I	CGRYCG	1 cut(s)	414
BshFI	GGCC	9 cut(s)	5, 161, 191, 237, 991, 1142, 1303, 1327, 1964
BshNI	GGYRCC	2 cut(s)	369, 2384
BshTI	ACCGGT	1 cut(s)	792
BsiEI	CGRYCG	1 cut(s)	414
BsiHKAI	GWGCWC	5 cut(s)	257, 692, 2134, 2149, 2482
BsiHKCI	CYCGRG	4 cut(s)	215, 359, 1244, 2475
BsiSI	CCGG	4 cut(s)	76, 151, 367, 793
BslFI	GGGAC	3 cut(s)	133, 325, 2363
BsmAI	GTCTC	2 cut(s)	760, 1997
BsmFI	GGGAC	3 cut(s)	133, 325, 2363
BsmI	GAATGC	4 cut(s)	651, 1418, 1933, 1988
BsnI	GGCC	9 cut(s)	5, 161, 191, 237, 991, 1142, 1303, 1327, 1964
Bso31I	GGTCTC	1 cut(s)	1997
BsoBI	CYCGRG	4 cut(s)	215, 359, 1244, 2475
Bsp1286I	GDGCHC	6 cut(s)	257, 366, 692, 2134, 2149, 2482
Bsp1407I	TGTACA	1 cut(s)	1182
BspANI	GGCC	9 cut(s)	5, 161, 191, 237, 991, 1142, 1303, 1327, 1964
BspCNI	CTCAG	8 cut(s)	807, 931, 941, 1171, 1868, 1993, 2282, 2449
BspFNI	CGCG	2 cut(s)	297, 2241
BspLI	GGNNCC	5 cut(s)	371, 1819, 2074, 2288, 2386
BspMAI	CTGCAG	3 cut(s)	487, 1097, 1504
BspOI	GCTAGC	1 cut(s)	1467
BspPI	GGATC	6 cut(s)	205, 334, 719, 1229, 2055, 2313
BspQI	GCTCTTC	2 cut(s)	1080, 2154
BspT107I	GGYRCC	2 cut(s)	369, 2384
BspTI	CTTAAG	1 cut(s)	569
BspTNI	GGTCTC	1 cut(s)	1997
BsrBI	CCGCTC	4 cut(s)	356, 515, 1276, 2410
BsrDI	GCAATG	2 cut(s)	1182, 1256
BsrFI	RCCGGY	1 cut(s)	792
BsrGI	TGTACA	1 cut(s)	1182
BsrI	ACTGG	3 cut(s)	1421, 1821, 2443
BssAI	RCCGGY	1 cut(s)	792
BssECI	CCNNGG	6 cut(s)	183, 229, 365, 832, 1804, 2380
BssT1I	CCWWGG	2 cut(s)	832, 1804
Bst2UI	CCWGG	6 cut(s)	380, 558, 1305, 1754, 1947, 2382
Bst4CI	ACNGT	6 cut(s)	187, 1350, 1394, 1622, 1728, 1996
Bst6I	CTCTTC	6 cut(s)	665, 1080, 1347, 1548, 1980, 2154
BstAFI	CTTAAG	1 cut(s)	569
BstAPI	GCANNNNNTGC	3 cut(s)	1238, 1508, 1517
BstAUI	TGTACA	1 cut(s)	1182
BstBAI	YACGTR	1 cut(s)	1514
BstC8I	GCNNGC	9 cut(s)	908, 1465, 1536, 1599, 1692, 1733, 2101, 2189, 2233
BstDSI	CCRYGG	1 cut(s)	183
BstEII	GGTNACC	1 cut(s)	827
BstF5I	GGATG	4 cut(s)	65, 442, 692, 1663
BstFNI	CGCG	2 cut(s)	297, 2241
BstH2I	RGCGCY	2 cut(s)	1093, 2431
BstHHI	GCGC	2 cut(s)	1092, 2430
BstMAI	GTCTC	2 cut(s)	760, 1997
BstMCI	CGRYCG	1 cut(s)	414
BstMWI	GCNNNNNNNGC	9 cut(s)	32, 188, 521, 1064, 1073, 1087, 1238, 1508, 1517
BstNI	CCWGG	6 cut(s)	380, 558, 1305, 1754, 1947, 2382
BstNSI	RCATGY	3 cut(s)	118, 1560, 2371
BstPI	GGTNACC	1 cut(s)	827
BstSCI	CCNGG	9 cut(s)	74, 149, 365, 378, 556, 1303, 1752, 1945, 2380
BstSFI	CTRYAG	3 cut(s)	483, 1093, 1500
BstUI	CGCG	2 cut(s)	297, 2241
BstV2I	GAAGAC	1 cut(s)	479
BstX2I	RGATCY	5 cut(s)	1169, 1234, 1714, 1841, 2047
BstYI	RGATCY	5 cut(s)	1169, 1234, 1714, 1841, 2047
BsuRI	GGCC	9 cut(s)	5, 161, 191, 237, 991, 1142, 1303, 1327, 1964
BtgI	CCRYGG	1 cut(s)	183
BtgZI	GCGATG	1 cut(s)	632
BtsCI	GGATG	4 cut(s)	65, 442, 692, 1663
BtsI	GCAGTG	1 cut(s)	1551
BtsIMutI	CAGTG	5 cut(s)	1390, 1428, 1551, 1733, 1828
Cac8I	GCNNGC	9 cut(s)	908, 1465, 1536, 1599, 1692, 1733, 2101, 2189, 2233
CaiI	CAGNNNCTG	1 cut(s)	1238
CfoI	GCGC	2 cut(s)	1092, 2430
Cfr10I	RCCGGY	1 cut(s)	792
Cfr13I	GGNCC	2 cut(s)	805, 2072
Csp6I	GTAC	1 cut(s)	1183
CspAI	ACCGGT	1 cut(s)	792
CviAII	CATG	9 cut(s)	115, 1205, 1382, 1460, 1530, 1557, 1676, 2362, 2368
CviQI	GTAC	1 cut(s)	1183
DraI	TTTAAA	2 cut(s)	736, 2464
DrdI	GACNNNNNNGTC	1 cut(s)	2443
DriI	GACNNNNNGTC	1 cut(s)	118
DseDI	GACNNNNNNGTC	1 cut(s)	2443
EaeI	YGGCCR	2 cut(s)	3, 235
Eam1104I	CTCTTC	6 cut(s)	665, 1080, 1347, 1548, 1980, 2154
Eam1105I	GACNNNNNGTC	1 cut(s)	118
EarI	CTCTTC	6 cut(s)	665, 1080, 1347, 1548, 1980, 2154
EciI	GGCGGA	1 cut(s)	1733
Ecl136II	GAGCTC	1 cut(s)	255
Eco130I	CCWWGG	2 cut(s)	832, 1804
Eco147I	AGGCCT	3 cut(s)	161, 991, 1327
Eco24I	GRGCYC	2 cut(s)	257, 366
Eco31I	GGTCTC	1 cut(s)	1997
Eco47I	GGWCC	2 cut(s)	805, 2072
Eco47III	AGCGCT	1 cut(s)	1091
Eco53kI	GAGCTC	1 cut(s)	255
Eco57I	CTGAAG	2 cut(s)	414, 624
Eco72I	CACGTG	1 cut(s)	1514
Eco88I	CYCGRG	4 cut(s)	215, 359, 1244, 2475
Eco91I	GGTNACC	1 cut(s)	827
EcoICRI	GAGCTC	1 cut(s)	255
EcoO65I	GGTNACC	1 cut(s)	827
EcoRI	GAATTC	2 cut(s)	1385, 2278
EcoRII	CCWGG	6 cut(s)	378, 556, 1303, 1752, 1945, 2380
EcoT14I	CCWWGG	2 cut(s)	832, 1804
EcoT22I	ATGCAT	1 cut(s)	1383
EcoT38I	GRGCYC	2 cut(s)	257, 366
ErhI	CCWWGG	2 cut(s)	832, 1804
FaeI	CATG	9 cut(s)	118, 1208, 1385, 1463, 1533, 1560, 1679, 2365, 2371
FalI	AAGNNNNNCTT	4 cut(s)	597, 629, 1678, 1710
FaqI	GGGAC	3 cut(s)	133, 325, 2363
FatI	CATG	9 cut(s)	114, 1204, 1381, 1459, 1529, 1556, 1675, 2361, 2367
FauI	CCCGC	1 cut(s)	2076
FbaI	TGATCA	1 cut(s)	2017
FblI	GTMKAC	2 cut(s)	319, 924
FokI	GGATG	4 cut(s)	52, 449, 679, 1670
FriOI	GRGCYC	2 cut(s)	257, 366
FspBI	CTAG	6 cut(s)	636, 1115, 1464, 1604, 1739, 1874
GlaI	GCGC	2 cut(s)	1091, 2429
GsaI	CCCAGC	1 cut(s)	1067
GsuI	CTGGAG	7 cut(s)	317, 540, 1404, 1804, 1902, 2405, 2426
HaeII	RGCGCY	2 cut(s)	1093, 2431
HaeIII	GGCC	9 cut(s)	5, 161, 191, 237, 991, 1142, 1303, 1327, 1964
HapII	CCGG	4 cut(s)	76, 151, 367, 793
HhaI	GCGC	2 cut(s)	1092, 2430
Hin1II	CATG	9 cut(s)	118, 1208, 1385, 1463, 1533, 1560, 1679, 2365, 2371
Hin6I	GCGC	2 cut(s)	1090, 2428
HinP1I	GCGC	2 cut(s)	1090, 2428
HpaII	CCGG	4 cut(s)	76, 151, 367, 793
HphI	GGTGA	6 cut(s)	634, 839, 1387, 1498, 2004, 2177
Hpy166II	GTNNAC	4 cut(s)	320, 805, 925, 1185
Hpy8I	GTNNAC	4 cut(s)	320, 805, 925, 1185
Hpy99I	CGWCG	2 cut(s)	227, 248
HpyAV	CCTTC	8 cut(s)	37, 133, 202, 674, 947, 955, 1429, 2038
HpyCH4III	ACNGT	6 cut(s)	187, 1350, 1394, 1622, 1728, 1996
HpyCH4IV	ACGT	1 cut(s)	1513
HpyF10VI	GCNNNNNNNGC	9 cut(s)	32, 188, 521, 1064, 1073, 1087, 1238, 1508, 1517
HpySE526I	ACGT	1 cut(s)	1513
Hsp92II	CATG	9 cut(s)	118, 1208, 1385, 1463, 1533, 1560, 1679, 2365, 2371
HspAI	GCGC	2 cut(s)	1090, 2428
Ksp22I	TGATCA	1 cut(s)	2017
LguI	GCTCTTC	2 cut(s)	1080, 2154
LmnI	GCTCC	6 cut(s)	210, 260, 1226, 1358, 1543, 1823
LweI	GCATC	2 cut(s)	1368, 2161
MaeI	CTAG	6 cut(s)	636, 1115, 1464, 1604, 1739, 1874
MaeII	ACGT	1 cut(s)	1513
MaeIII	GTNAC	7 cut(s)	827, 1102, 1309, 1486, 1762, 1888, 2415
MbiI	CCGCTC	4 cut(s)	356, 515, 1276, 2410
MfeI	CAATTG	3 cut(s)	429, 501, 1407
MflI	RGATCY	5 cut(s)	1169, 1234, 1714, 1841, 2047
MhlI	GDGCHC	6 cut(s)	257, 366, 692, 2134, 2149, 2482
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	5 cut(s)	307, 920, 1037, 1606, 1751
MmeI	TCCRAC	4 cut(s)	162, 267, 684, 752
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	1383
MroXI	GAANNNNTTC	3 cut(s)	609, 1799, 1954
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	570, 735, 2177, 2463
MslI	CAYNNNNRTG	3 cut(s)	697, 948, 2366
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	1499
MspCI	CTTAAG	1 cut(s)	569
MspI	CCGG	4 cut(s)	76, 151, 367, 793
MspR9I	CCNGG	9 cut(s)	76, 151, 367, 380, 558, 1305, 1754, 1947, 2382
MunI	CAATTG	3 cut(s)	429, 501, 1407
Mva1269I	GAATGC	4 cut(s)	651, 1418, 1933, 1988
MvaI	CCWGG	6 cut(s)	380, 558, 1305, 1754, 1947, 2382
MvnI	CGCG	2 cut(s)	297, 2241
MwoI	GCNNNNNNNGC	9 cut(s)	32, 188, 521, 1064, 1073, 1087, 1238, 1508, 1517
NciI	CCSGG	3 cut(s)	76, 151, 367
NheI	GCTAGC	1 cut(s)	1463
NlaIII	CATG	9 cut(s)	118, 1208, 1385, 1463, 1533, 1560, 1679, 2365, 2371
NlaIV	GGNNCC	5 cut(s)	371, 1819, 2074, 2288, 2386
NmeAIII	GCCGAG	1 cut(s)	210
NmuCI	GTSAC	4 cut(s)	1102, 1486, 1888, 2415
NsiI	ATGCAT	1 cut(s)	1383
NspI	RCATGY	3 cut(s)	118, 1560, 2371
PaeR7I	CTCGAG	2 cut(s)	359, 2475
PceI	AGGCCT	3 cut(s)	161, 991, 1327
PciI	ACATGT	2 cut(s)	114, 2367
PciSI	GCTCTTC	2 cut(s)	1080, 2154
PcsI	WCGNNNNNNNCGW	1 cut(s)	946
PctI	GAATGC	4 cut(s)	651, 1418, 1933, 1988
PdmI	GAANNNNTTC	3 cut(s)	609, 1799, 1954
PfeI	GAWTC	7 cut(s)	285, 375, 389, 707, 1127, 1625, 1970
PflMI	CCANNNNNTGG	1 cut(s)	1753
PfoI	TCCNGGA	2 cut(s)	74, 378
PinAI	ACCGGT	1 cut(s)	792
Ple19I	CGATCG	1 cut(s)	414
PleI	GAGTC	5 cut(s)	307, 920, 1036, 1606, 1751
PmaCI	CACGTG	1 cut(s)	1514
PmlI	CACGTG	1 cut(s)	1514
PpsI	GAGTC	5 cut(s)	307, 920, 1036, 1606, 1751
Ppu21I	YACGTR	1 cut(s)	1514
PscI	ACATGT	2 cut(s)	114, 2367
PsiI	TTATAA	1 cut(s)	443
Psp124BI	GAGCTC	1 cut(s)	257
Psp6I	CCWGG	6 cut(s)	378, 556, 1303, 1752, 1945, 2380
PspCI	CACGTG	1 cut(s)	1514
PspEI	GGTNACC	1 cut(s)	827
PspFI	CCCAGC	1 cut(s)	1063
PspGI	CCWGG	6 cut(s)	378, 556, 1303, 1752, 1945, 2380
PspN4I	GGNNCC	5 cut(s)	371, 1819, 2074, 2288, 2386
PspPI	GGNCC	2 cut(s)	805, 2072
PspXI	VCTCGAGB	1 cut(s)	2475
PstI	CTGCAG	3 cut(s)	487, 1097, 1504
PstNI	CAGNNNCTG	1 cut(s)	1238
PsuI	RGATCY	5 cut(s)	1169, 1234, 1714, 1841, 2047
PvuI	CGATCG	1 cut(s)	414
PvuII	CAGCTG	1 cut(s)	1499
RsaI	GTAC	1 cut(s)	1184
RsaNI	GTAC	1 cut(s)	1183
RseI	CAYNNNNRTG	3 cut(s)	697, 948, 2366
SacI	GAGCTC	1 cut(s)	257
SapI	GCTCTTC	2 cut(s)	1080, 2154
SaqAI	TTAA	4 cut(s)	570, 735, 2177, 2463
Sau96I	GGNCC	2 cut(s)	805, 2072
SchI	GAGTC	5 cut(s)	307, 920, 1037, 1606, 1751
ScrFI	CCNGG	9 cut(s)	76, 151, 367, 380, 558, 1305, 1754, 1947, 2382
SduI	GDGCHC	6 cut(s)	257, 366, 692, 2134, 2149, 2482
SfaNI	GCATC	2 cut(s)	1368, 2161
SfcI	CTRYAG	3 cut(s)	483, 1093, 1500
Sfr274I	CTCGAG	2 cut(s)	359, 2475
SinI	GGWCC	2 cut(s)	805, 2072
SlaI	CTCGAG	2 cut(s)	359, 2475
SmiMI	CAYNNNNRTG	3 cut(s)	697, 948, 2366
SmlI	CTYRAG	3 cut(s)	359, 569, 2475
SmoI	CTYRAG	3 cut(s)	359, 569, 2475
SpeI	ACTAGT	1 cut(s)	1738
SseBI	AGGCCT	3 cut(s)	161, 991, 1327
SspI	AATATT	2 cut(s)	1022, 2114
SspMI	CTAG	6 cut(s)	636, 1115, 1464, 1604, 1739, 1874
SstI	GAGCTC	1 cut(s)	257
StuI	AGGCCT	3 cut(s)	161, 991, 1327
StyD4I	CCNGG	9 cut(s)	74, 149, 365, 378, 556, 1303, 1752, 1945, 2380
StyI	CCWWGG	2 cut(s)	832, 1804
TaaI	ACNGT	6 cut(s)	187, 1350, 1394, 1622, 1728, 1996
TaiI	ACGT	1 cut(s)	1516
TatI	WGTACW	1 cut(s)	1182
TauI	GCSGC	3 cut(s)	107, 237, 2413
TfiI	GAWTC	7 cut(s)	285, 375, 389, 707, 1127, 1625, 1970
Tru1I	TTAA	4 cut(s)	570, 735, 2177, 2463
Tru9I	TTAA	4 cut(s)	570, 735, 2177, 2463
TscAI	CASTG	5 cut(s)	1397, 1428, 1558, 1733, 1828
TseFI	GTSAC	4 cut(s)	1102, 1486, 1888, 2415
Tsp45I	GTSAC	4 cut(s)	1102, 1486, 1888, 2415
TspDTI	ATGAA	6 cut(s)	990, 1398, 1664, 1854, 2199, 2350
TspGWI	ACGGA	1 cut(s)	1624
TspRI	CASTG	5 cut(s)	1397, 1428, 1558, 1733, 1828
Van91I	CCANNNNNTGG	1 cut(s)	1753
Vha464I	CTTAAG	1 cut(s)	569
VpaK11BI	GGWCC	2 cut(s)	805, 2072
XapI	RAATTY	6 cut(s)	609, 761, 782, 1385, 2278, 2357
XbaI	TCTAGA	1 cut(s)	1603
XceI	RCATGY	3 cut(s)	118, 1560, 2371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1811
XhoI	CTCGAG	2 cut(s)	359, 2475
XmiI	GTMKAC	2 cut(s)	319, 924
XmnI	GAANNNNTTC	3 cut(s)	609, 1799, 1954
XspI	CTAG	6 cut(s)	636, 1115, 1464, 1604, 1739, 1874
Zsp2I	ATGCAT	1 cut(s)	1383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.