Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002221.1

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2233

Gene Structure 2233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002221.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 818 bp

ctccatgggtcgcttgtaaagacgggtttggaggaacacgtgtttattgggaactggatcatgcccggaaggtgtttgatgaaatgcttgagagaaatactgggtcgtggactagttcgattcgtgcttatggtgactactatggtgcgtgtcatttctgcttgtgcaaagttgaaggatgttgcgttgactttggcacaactaagcgattctctcactggaaagtattgcatgttcatgttctaaggaatggactggaaggttgtaatacgatttgcaatgctatgattgacatgtacatgaactgcggccaacaagagatggcctgcagagtttttgacaatatgttgaataggactgtagtatcatggaactcattgatttctggtttcataagaaatggtcatgtgaagtcagcttggaaatgttcagtgagatgccaaaagagtgatcttgtctcttggaacaccataattggtgctctgttccaagagagcaagtttggggaagcaattgaacttttcagggtgatgcagactgagggaataaaaggagatagggtgaccatggtggaggctgcatctgcctgcggatatctaggagctcttgatcttgcaaagtggattcatgcttatatcgaaaaaaaaaaaaacgaaattaactgtgacatgtggctcggcacagctttagttgacatgttggctagatgtagtgaacttcaaagtgcgatgaaggtgttcgataacatggcaagaggagatgtttctgcttggacagcagccattggagcaatggccatgcaaggaaatggggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

271

Amino Acids

30.41

Weight (kDa)

7.26

Isoelectric Point (pI)

26.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	308, 590
AclWI	GGATC	1 cut(s)	65
AcoI	YGGCCR	2 cut(s)	309, 794
AcvI	CACGTG	1 cut(s)	40
AfaI	GTAC	1 cut(s)	298
AflIII	ACRYGT	5 cut(s)	37, 39, 293, 668, 695
AgsI	TTSAA	4 cut(s)	175, 351, 517, 721
AhlI	ACTAGT	1 cut(s)	112
AluBI	AGCT	3 cut(s)	418, 604, 685
AluI	AGCT	3 cut(s)	418, 604, 685
Alw21I	GWGCWC	2 cut(s)	483, 606
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	1 cut(s)	65
AoxI	GGCC	3 cut(s)	309, 323, 794
ApeKI	GCWGC	2 cut(s)	577, 778
Asp700I	GAANNNNTTC	1 cut(s)	736
AsuC2I	CCSGG	1 cut(s)	66
AsuHPI	GGTGA	3 cut(s)	145, 540, 573
BaeI	ACNNNNGTAYC	2 cut(s)	347, 380
BalI	TGGCCA	1 cut(s)	796
BanII	GRGCYC	1 cut(s)	606
BbrPI	CACGTG	1 cut(s)	40
Bbv12I	GWGCWC	2 cut(s)	483, 606
BbvI	GCAGC	2 cut(s)	564, 790
BccI	CCATC	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	462
BcuI	ACTAGT	1 cut(s)	112
BfaI	CTAG	3 cut(s)	113, 598, 704
BfmI	CTRYAG	2 cut(s)	327, 359
BisI	GCNGC	3 cut(s)	309, 578, 779
BlsI	GCNGC	3 cut(s)	310, 579, 780
Bme1390I	CCNGG	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	66
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	3 cut(s)	427, 521, 589
BmuI	ACTGGG	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	109
BpuMI	CCSGG	1 cut(s)	66
BsaAI	YACGTR	1 cut(s)	40
BsaJI	CCNNGG	2 cut(s)	4, 566
BsaXI	ACNNNNNCTCC	2 cut(s)	545, 575
Bse1I	ACTGG	4 cut(s)	59, 105, 223, 260
Bse3DI	GCAATG	2 cut(s)	285, 797
BseDI	CCNNGG	2 cut(s)	4, 566
BseGI	GGATG	1 cut(s)	184
BseMI	GCAATG	2 cut(s)	285, 797
BseMII	CTCAG	1 cut(s)	530
BseNI	ACTGG	4 cut(s)	59, 105, 223, 260
BseRI	GAGGAG	1 cut(s)	770
BseXI	GCAGC	2 cut(s)	564, 790
BshFI	GGCC	3 cut(s)	311, 325, 796
BsiHKAI	GWGCWC	2 cut(s)	483, 606
BsiSI	CCGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	462
BsnI	GGCC	3 cut(s)	311, 325, 796
Bsp1286I	GDGCHC	2 cut(s)	483, 606
Bsp1407I	TGTACA	1 cut(s)	296
Bsp143I	GATC	3 cut(s)	57, 450, 609
Bsp19I	CCATGG	2 cut(s)	4, 566
BspACI	CCGC	2 cut(s)	308, 590
BspANI	GGCC	3 cut(s)	311, 325, 796
BspCNI	CTCAG	1 cut(s)	531
BspMAI	CTGCAG	1 cut(s)	331
BspPI	GGATC	1 cut(s)	65
BsrDI	GCAATG	2 cut(s)	285, 797
BsrGI	TGTACA	1 cut(s)	296
BsrI	ACTGG	4 cut(s)	59, 105, 223, 260
BssECI	CCNNGG	2 cut(s)	4, 566
BssMI	GATC	3 cut(s)	57, 450, 609
BssT1I	CCWWGG	2 cut(s)	4, 566
Bst4CI	ACNGT	2 cut(s)	360, 664
BstAUI	TGTACA	1 cut(s)	296
BstBAI	YACGTR	1 cut(s)	40
BstC8I	GCNNGC	2 cut(s)	327, 588
BstDEI	CTNAG	3 cut(s)	203, 244, 539
BstDSI	CCRYGG	2 cut(s)	4, 566
BstEII	GGTNACC	1 cut(s)	561
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	3 cut(s)	60, 453, 612
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	3 cut(s)	57, 450, 609
BstMWI	GCNNNNNNNGC	3 cut(s)	583, 775, 787
BstNSI	RCATGY	4 cut(s)	235, 297, 672, 699
BstPI	GGTNACC	1 cut(s)	561
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	2 cut(s)	327, 359
BstV1I	GCAGC	2 cut(s)	564, 790
BsuRI	GGCC	3 cut(s)	311, 325, 796
BtgI	CCRYGG	2 cut(s)	4, 566
BtgZI	GCGATG	1 cut(s)	742
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	2 cut(s)	216, 437
Cac8I	GCNNGC	2 cut(s)	327, 588
Csp6I	GTAC	1 cut(s)	297
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	3 cut(s)	203, 244, 539
DpnI	GATC	3 cut(s)	59, 452, 611
DpnII	GATC	3 cut(s)	57, 450, 609
EaeI	YGGCCR	2 cut(s)	309, 794
Ecl136II	GAGCTC	1 cut(s)	604
Eco130I	CCWWGG	2 cut(s)	4, 566
Eco24I	GRGCYC	1 cut(s)	606
Eco32I	GATATC	1 cut(s)	595
Eco53kI	GAGCTC	1 cut(s)	604
Eco72I	CACGTG	1 cut(s)	40
Eco91I	GGTNACC	1 cut(s)	561
EcoICRI	GAGCTC	1 cut(s)	604
EcoO65I	GGTNACC	1 cut(s)	561
EcoRV	GATATC	1 cut(s)	595
EcoT14I	CCWWGG	2 cut(s)	4, 566
EcoT38I	GRGCYC	1 cut(s)	606
ErhI	CCWWGG	2 cut(s)	4, 566
Fnu4HI	GCNGC	3 cut(s)	309, 578, 779
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	606
Fsp4HI	GCNGC	3 cut(s)	309, 578, 779
FspBI	CTAG	3 cut(s)	113, 598, 704
GluI	GCNGC	3 cut(s)	309, 578, 779
HaeIII	GGCC	3 cut(s)	311, 325, 796
HapII	CCGG	1 cut(s)	66
HincII	GTYRAC	2 cut(s)	189, 693
HindII	GTYRAC	2 cut(s)	189, 693
HinfI	GANTC	3 cut(s)	120, 209, 624
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	3 cut(s)	145, 540, 573
Hpy166II	GTNNAC	4 cut(s)	110, 189, 693, 715
Hpy188III	TCNNGA	1 cut(s)	607
Hpy8I	GTNNAC	4 cut(s)	110, 189, 693, 715
HpyAV	CCTTC	4 cut(s)	63, 169, 253, 726
HpyCH4III	ACNGT	2 cut(s)	360, 664
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	8 cut(s)	167, 231, 278, 329, 534, 580, 616, 801
HpyF10VI	GCNNNNNNNGC	3 cut(s)	583, 775, 787
HpyF3I	CTNAG	3 cut(s)	203, 244, 539
HpySE526I	ACGT	1 cut(s)	39
Kzo9I	GATC	3 cut(s)	57, 450, 609
LmnI	GCTCC	2 cut(s)	601, 787
LpnPI	CCDG	9 cut(s)	40, 79, 86, 204, 241, 339, 371, 510, 600
Lsp1109I	GCAGC	2 cut(s)	564, 790
LweI	GCATC	3 cut(s)	427, 521, 589
MaeI	CTAG	3 cut(s)	113, 598, 704
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	3 cut(s)	133, 561, 664
MalI	GATC	3 cut(s)	59, 452, 611
MboI	GATC	3 cut(s)	57, 450, 609
MfeI	CAATTG	1 cut(s)	512
MhlI	GDGCHC	2 cut(s)	483, 606
MlsI	TGGCCA	1 cut(s)	796
MluCI	AATT	3 cut(s)	473, 512, 656
MluNI	TGGCCA	1 cut(s)	796
MnlI	CCTC	4 cut(s)	25, 534, 567, 748
Mox20I	TGGCCA	1 cut(s)	796
MroXI	GAANNNNTTC	1 cut(s)	736
MscI	TGGCCA	1 cut(s)	796
MseI	TTAA	1 cut(s)	659
MslI	CAYNNNNRTG	2 cut(s)	236, 298
Msp20I	TGGCCA	1 cut(s)	796
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	66
MunI	CAATTG	1 cut(s)	512
MwoI	GCNNNNNNNGC	3 cut(s)	583, 775, 787
NciI	CCSGG	1 cut(s)	66
NcoI	CCATGG	2 cut(s)	4, 566
NdeII	GATC	3 cut(s)	57, 450, 609
NmeAIII	GCCGAG	1 cut(s)	656
NmuCI	GTSAC	3 cut(s)	133, 561, 664
NspI	RCATGY	4 cut(s)	235, 297, 672, 699
PciI	ACATGT	3 cut(s)	293, 668, 695
PdmI	GAANNNNTTC	1 cut(s)	736
PfeI	GAWTC	3 cut(s)	120, 209, 624
PkrI	GCNGC	3 cut(s)	310, 579, 780
PmaCI	CACGTG	1 cut(s)	40
PmlI	CACGTG	1 cut(s)	40
Ppu21I	YACGTR	1 cut(s)	40
PscI	ACATGT	3 cut(s)	293, 668, 695
Psp124BI	GAGCTC	1 cut(s)	606
PspCI	CACGTG	1 cut(s)	40
PspEI	GGTNACC	1 cut(s)	561
PsrI	GAACNNNNNNTAC	2 cut(s)	218, 250
PstI	CTGCAG	1 cut(s)	331
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	2 cut(s)	236, 298
SacI	GAGCTC	1 cut(s)	606
SaqAI	TTAA	1 cut(s)	659
SatI	GCNGC	3 cut(s)	309, 578, 779
Sau3AI	GATC	3 cut(s)	57, 450, 609
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	2 cut(s)	483, 606
SetI	ASST	7 cut(s)	42, 74, 264, 420, 606, 687, 737
SfaNI	GCATC	3 cut(s)	427, 521, 589
SfcI	CTRYAG	2 cut(s)	327, 359
SmiMI	CAYNNNNRTG	2 cut(s)	236, 298
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
SpeI	ACTAGT	1 cut(s)	112
Sse9I	AATT	3 cut(s)	473, 512, 656
SsiI	CCGC	2 cut(s)	308, 590
SspMI	CTAG	3 cut(s)	113, 598, 704
SstI	GAGCTC	1 cut(s)	606
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	2 cut(s)	4, 566
TaaI	ACNGT	2 cut(s)	360, 664
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	3 cut(s)	118, 638, 740
TasI	AATT	3 cut(s)	473, 512, 656
TatI	WGTACW	1 cut(s)	296
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	3 cut(s)	120, 209, 624
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TscAI	CASTG	2 cut(s)	223, 437
TseFI	GTSAC	3 cut(s)	133, 561, 664
TseI	GCWGC	2 cut(s)	577, 778
Tsp45I	GTSAC	3 cut(s)	133, 561, 664
TspDTI	ATGAA	6 cut(s)	95, 226, 316, 381, 616, 745
TspRI	CASTG	2 cut(s)	223, 437
XceI	RCATGY	4 cut(s)	235, 297, 672, 699
XcmI	CCANNNNNNNNNTGG	1 cut(s)	789
XmnI	GAANNNNTTC	1 cut(s)	736
XspI	CTAG	3 cut(s)	113, 598, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.