Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Reverse (-)

61573596 .. 61574845

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009995

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTGCTGGCGTTGTATGCTGAGGTTATTTCAGCTCCATGGGTCGCTTGTAAGGACGGGTTTGGGGGAACACGTGTTTATTGGGAACTGGATCATGCCCGGAAGGTGTTTGATGAAATGCTTGAGAGAAATACTGGGTCGTGGACTTGTTCGATTCGTGCTTATGGTGACTACTATGGTGCGTGTCATTTCTGCTTGTGCAAAGTTGAAGGATGTTGCGTTGATAGGGATTTGTCAAATTATGTGCGCCAGGGACTGGCTGGTGAAGCAGTTTCGGCACTGGCTGGTGAAGCAGTTTTGGTGATGGGTGAAATGCCACAACAGGGCCTAAGACCCGACAAGGTGATGCAGACTGAGGGAATAAAAGGAGATTGGGTGACCATGGTGGAGGCTGCATCTGCCTGCGGATATCTAGGAGCTCTTGATCTTGCAAAGTGGATTCATGCTTATATCGAAAAAAAAAAAACCGAAATTAACTGTGACATGTGGCTCGGCACAGCTTTAGTTGACATGTTGGCTAGATGTAGTGAACTTCAAAGTGCAATGAAGGTGTTCGATAACATGGCAAGAGGAGATGTTTCTGCTTGGACAGCAGCCATTGGAGCAATGGCCATGCAAGGAAATGGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

211

Amino Acids

22.97

Weight (kDa)

4.94

Isoelectric Point (pI)

25.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	256
AciI	CCGC	1 cut(s)	405
AclWI	GGATC	1 cut(s)	99
AcoI	YGGCCR	1 cut(s)	609
AcvI	CACGTG	1 cut(s)	74
AfiI	CCNNNNNNNGG	2 cut(s)	256, 323
AflIII	ACRYGT	4 cut(s)	71, 73, 483, 510
AgsI	TTSAA	2 cut(s)	209, 536
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	3 cut(s)	35, 419, 500
AluI	AGCT	3 cut(s)	35, 419, 500
Alw21I	GWGCWC	1 cut(s)	421
AlwI	GGATC	1 cut(s)	99
AlwNI	CAGNNNCTG	1 cut(s)	256
AoxI	GGCC	2 cut(s)	325, 609
ApeKI	GCWGC	2 cut(s)	392, 593
Asp700I	GAANNNNTTC	1 cut(s)	551
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	325
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	7 cut(s)	179, 275, 299, 313, 320, 355, 388
BalI	TGGCCA	1 cut(s)	611
BanII	GRGCYC	1 cut(s)	421
BbrPI	CACGTG	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	421
BbvCI	CCTCAGC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	379, 605
BccI	CCATC	1 cut(s)	298
BciT130I	CCWGG	1 cut(s)	251
BcnI	CCSGG	1 cut(s)	100
BfaI	CTAG	2 cut(s)	413, 519
BisI	GCNGC	2 cut(s)	393, 594
BlsI	GCNGC	2 cut(s)	394, 595
Bme1390I	CCNGG	2 cut(s)	100, 251
BmgT120I	GGNCC	1 cut(s)	325
BmrFI	CCNGG	2 cut(s)	100, 251
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	2 cut(s)	336, 404
BmuI	ACTGGG	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	100
BsaAI	YACGTR	1 cut(s)	74
BsaJI	CCNNGG	3 cut(s)	38, 250, 381
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 323
Bse1I	ACTGG	4 cut(s)	93, 139, 261, 285
Bse3DI	GCAATG	2 cut(s)	549, 612
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	3 cut(s)	38, 250, 381
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	2 cut(s)	256, 323
BseMI	GCAATG	2 cut(s)	549, 612
BseMII	CTCAG	2 cut(s)	12, 345
BseNI	ACTGG	4 cut(s)	93, 139, 261, 285
BseRI	GAGGAG	1 cut(s)	585
BseXI	GCAGC	2 cut(s)	379, 605
BshFI	GGCC	2 cut(s)	327, 611
BsiHKAI	GWGCWC	1 cut(s)	421
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	2 cut(s)	256, 323
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	2 cut(s)	327, 611
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	2 cut(s)	91, 424
Bsp19I	CCATGG	2 cut(s)	38, 381
BspACI	CCGC	1 cut(s)	405
BspANI	GGCC	2 cut(s)	327, 611
BspCNI	CTCAG	2 cut(s)	13, 346
BspPI	GGATC	1 cut(s)	99
BsrDI	GCAATG	2 cut(s)	549, 612
BsrI	ACTGG	4 cut(s)	93, 139, 261, 285
BssECI	CCNNGG	3 cut(s)	38, 250, 381
BssMI	GATC	2 cut(s)	91, 424
BssT1I	CCWWGG	2 cut(s)	38, 381
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	479
BstBAI	YACGTR	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	9, 403
BstDEI	CTNAG	3 cut(s)	21, 329, 354
BstDSI	CCRYGG	2 cut(s)	38, 381
BstEII	GGTNACC	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	2 cut(s)	94, 427
BstMBI	GATC	2 cut(s)	91, 424
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 266, 275, 290, 398, 590, 602
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	2 cut(s)	487, 514
BstPI	GGTNACC	1 cut(s)	376
BstSCI	CCNGG	2 cut(s)	98, 249
BstV1I	GCAGC	2 cut(s)	379, 605
BsuRI	GGCC	2 cut(s)	327, 611
BtgI	CCRYGG	2 cut(s)	38, 381
BtsCI	GGATG	1 cut(s)	218
BtsIMutI	CAGTG	1 cut(s)	278
Cac8I	GCNNGC	2 cut(s)	9, 403
CaiI	CAGNNNCTG	1 cut(s)	256
CfoI	GCGC	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	325
CviAII	CATG	8 cut(s)	39, 95, 382, 443, 484, 511, 562, 613
DdeI	CTNAG	3 cut(s)	21, 329, 354
DpnI	GATC	2 cut(s)	93, 426
DpnII	GATC	2 cut(s)	91, 424
EaeI	YGGCCR	1 cut(s)	609
Ecl136II	GAGCTC	1 cut(s)	419
Eco130I	CCWWGG	2 cut(s)	38, 381
Eco24I	GRGCYC	1 cut(s)	421
Eco32I	GATATC	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	419
Eco72I	CACGTG	1 cut(s)	74
Eco91I	GGTNACC	1 cut(s)	376
EcoICRI	GAGCTC	1 cut(s)	419
EcoO109I	RGGNCCY	1 cut(s)	325
EcoO65I	GGTNACC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	249
EcoRV	GATATC	1 cut(s)	410
EcoT14I	CCWWGG	2 cut(s)	38, 381
EcoT38I	GRGCYC	1 cut(s)	421
ErhI	CCWWGG	2 cut(s)	38, 381
FaeI	CATG	8 cut(s)	42, 98, 385, 446, 487, 514, 565, 616
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	8 cut(s)	38, 94, 381, 442, 483, 510, 561, 612
Fnu4HI	GCNGC	2 cut(s)	393, 594
FokI	GGATG	1 cut(s)	225
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	2 cut(s)	393, 594
FspBI	CTAG	2 cut(s)	413, 519
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	2 cut(s)	393, 594
HaeIII	GGCC	2 cut(s)	327, 611
HapII	CCGG	1 cut(s)	100
HhaI	GCGC	1 cut(s)	249
Hin1II	CATG	8 cut(s)	42, 98, 385, 446, 487, 514, 565, 616
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	2 cut(s)	154, 439
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	7 cut(s)	179, 275, 299, 313, 320, 355, 388
Hpy166II	GTNNAC	3 cut(s)	144, 508, 530
Hpy188III	TCNNGA	1 cut(s)	422
Hpy8I	GTNNAC	3 cut(s)	144, 508, 530
HpyAV	CCTTC	3 cut(s)	97, 203, 541
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	6 cut(s)	201, 349, 395, 431, 542, 616
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 266, 275, 290, 398, 590, 602
HpyF3I	CTNAG	3 cut(s)	21, 329, 354
HpySE526I	ACGT	1 cut(s)	73
Hsp92II	CATG	8 cut(s)	42, 98, 385, 446, 487, 514, 565, 616
HspAI	GCGC	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	91, 424
LmnI	GCTCC	3 cut(s)	40, 416, 602
Lsp1109I	GCAGC	2 cut(s)	379, 605
LweI	GCATC	2 cut(s)	336, 404
MaeI	CTAG	2 cut(s)	413, 519
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	3 cut(s)	167, 376, 479
MalI	GATC	2 cut(s)	93, 426
MboI	GATC	2 cut(s)	91, 424
MhlI	GDGCHC	1 cut(s)	421
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	2 cut(s)	238, 471
MluNI	TGGCCA	1 cut(s)	611
MnlI	CCTC	4 cut(s)	16, 349, 382, 563
Mox20I	TGGCCA	1 cut(s)	611
MroXI	GAANNNNTTC	1 cut(s)	551
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	1 cut(s)	474
Msp20I	TGGCCA	1 cut(s)	611
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	2 cut(s)	100, 251
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	7 cut(s)	17, 266, 275, 290, 398, 590, 602
NciI	CCSGG	1 cut(s)	100
NcoI	CCATGG	2 cut(s)	38, 381
NdeII	GATC	2 cut(s)	91, 424
NlaIII	CATG	8 cut(s)	42, 98, 385, 446, 487, 514, 565, 616
NmeAIII	GCCGAG	1 cut(s)	471
NmuCI	GTSAC	3 cut(s)	167, 376, 479
NspI	RCATGY	2 cut(s)	487, 514
PciI	ACATGT	2 cut(s)	483, 510
PdmI	GAANNNNTTC	1 cut(s)	551
PfeI	GAWTC	2 cut(s)	154, 439
PflMI	CCANNNNNTGG	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	394, 595
PmaCI	CACGTG	1 cut(s)	74
PmlI	CACGTG	1 cut(s)	74
Ppu21I	YACGTR	1 cut(s)	74
PscI	ACATGT	2 cut(s)	483, 510
Psp124BI	GAGCTC	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	249
PspCI	CACGTG	1 cut(s)	74
PspEI	GGTNACC	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	256
SacI	GAGCTC	1 cut(s)	421
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	2 cut(s)	393, 594
Sau3AI	GATC	2 cut(s)	91, 424
Sau96I	GGNCC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	100, 251
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	8 cut(s)	27, 37, 76, 108, 345, 421, 502, 552
SfaNI	GCATC	2 cut(s)	336, 404
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	238, 471
SsiI	CCGC	1 cut(s)	405
SspMI	CTAG	2 cut(s)	413, 519
SstI	GAGCTC	1 cut(s)	421
StyD4I	CCNGG	2 cut(s)	98, 249
StyI	CCWWGG	2 cut(s)	38, 381
TaaI	ACNGT	1 cut(s)	479
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	3 cut(s)	152, 453, 555
TasI	AATT	2 cut(s)	238, 471
TfiI	GAWTC	2 cut(s)	154, 439
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	3 cut(s)	167, 376, 479
TseI	GCWGC	2 cut(s)	392, 593
Tsp45I	GTSAC	3 cut(s)	167, 376, 479
TspDTI	ATGAA	3 cut(s)	129, 431, 560
TspRI	CASTG	1 cut(s)	285
Van91I	CCANNNNNTGG	1 cut(s)	256
XceI	RCATGY	2 cut(s)	487, 514
XcmI	CCANNNNNNNNNTGG	2 cut(s)	257, 604
XmnI	GAANNNNTTC	1 cut(s)	551
XspI	CTAG	2 cut(s)	413, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.