Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Reverse (-)

2166085 .. 2166528

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36011

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGATTGGTGCTCTGGTCCAAGAGAGCAAGTTTGGGGAAGCAATTGAACTTTTCCGGGTGATGAGGACTGAGGGAATAAAAGGAGATAGGGTGACCATGGTGGAGGTTGCATCTGCCTGCGGATATCTAGGAGCTCTTGATCTTGCAAAGTGGACTCATGCTTATTTTGAAAAAAATGAAATTAACTGTGACATGCGGCTCGGGACAGCTTTAGTTGACATGTTTGCTAGATGTGGTGAACCTCAAAGTGCAATGAAGCGGTTCAATAACATGGCAAGAAGAGATGTTTCTGCTTTGACTGCAGCCATTGGAGCAATGGTCATTATGGGAAATGGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

113

Amino Acids

12.37

Weight (kDa)

5.85

Isoelectric Point (pI)

26.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	120, 196, 259
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	3 cut(s)	47, 170, 265
AluBI	AGCT	2 cut(s)	134, 209
AluI	AGCT	2 cut(s)	134, 209
Alw21I	GWGCWC	2 cut(s)	13, 136
Ama87I	CYCGRG	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	70, 103, 248
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	136
Bbv12I	GWGCWC	2 cut(s)	13, 136
BbvI	GCAGC	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	56
BfaI	CTAG	2 cut(s)	128, 228
BfmI	CTRYAG	1 cut(s)	300
BisI	GCNGC	2 cut(s)	197, 303
BlsI	GCNGC	2 cut(s)	198, 304
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	96
BsaXI	ACNNNNNCTCC	4 cut(s)	75, 105, 303, 333
Bse3DI	GCAATG	2 cut(s)	258, 321
BseDI	CCNNGG	1 cut(s)	96
BseMI	GCAATG	2 cut(s)	258, 321
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	314
BsiHKAI	GWGCWC	2 cut(s)	13, 136
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	55
BslFI	GGGAC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	217
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	13, 136
Bsp143I	GATC	1 cut(s)	139
Bsp19I	CCATGG	1 cut(s)	96
BspACI	CCGC	3 cut(s)	120, 196, 259
BspCNI	CTCAG	1 cut(s)	61
BspMAI	CTGCAG	1 cut(s)	304
BsrDI	GCAATG	2 cut(s)	258, 321
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	96
BstEII	GGTNACC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 311
BstNSI	RCATGY	2 cut(s)	196, 223
BstPI	GGTNACC	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	314
BtgI	CCRYGG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	16
CviAII	CATG	5 cut(s)	97, 158, 193, 220, 271
CviJI	RGCY	4 cut(s)	134, 199, 209, 305
CviKI_1	RGCY	4 cut(s)	134, 199, 209, 305
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	16
Eco53kI	GAGCTC	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	200
Eco91I	GGTNACC	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	134
EcoO65I	GGTNACC	1 cut(s)	91
EcoRV	GATATC	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	5 cut(s)	100, 161, 196, 223, 274
FaiI	YATR	6 cut(s)	98, 159, 194, 221, 272, 326
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	5 cut(s)	96, 157, 192, 219, 270
Fnu4HI	GCNGC	2 cut(s)	197, 303
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	2 cut(s)	197, 303
FspBI	CTAG	2 cut(s)	128, 228
GluI	GCNGC	2 cut(s)	197, 303
HapII	CCGG	1 cut(s)	55
Hin1II	CATG	5 cut(s)	100, 161, 196, 223, 274
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	3 cut(s)	70, 103, 248
Hpy166II	GTNNAC	3 cut(s)	153, 217, 239
Hpy188III	TCNNGA	2 cut(s)	137, 202
Hpy8I	GTNNAC	3 cut(s)	153, 217, 239
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4V	TGCA	4 cut(s)	110, 146, 251, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 311
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	5 cut(s)	100, 161, 196, 223, 274
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	131, 311
LpnPI	CCDG	2 cut(s)	68, 130
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	2 cut(s)	128, 228
MaeIII	GTNAC	2 cut(s)	91, 188
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	1 cut(s)	291
MfeI	CAATTG	1 cut(s)	42
MhlI	GDGCHC	2 cut(s)	13, 136
MluCI	AATT	2 cut(s)	42, 180
MlyI	GAGTC	1 cut(s)	148
MnlI	CCTC	4 cut(s)	57, 64, 97, 252
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	1 cut(s)	183
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	42
MwoI	GCNNNNNNNGC	2 cut(s)	299, 311
NciI	CCSGG	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	5 cut(s)	100, 161, 196, 223, 274
NmuCI	GTSAC	2 cut(s)	91, 188
NspI	RCATGY	2 cut(s)	196, 223
PciI	ACATGT	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	198, 304
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PscI	ACATGT	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	136
PspEI	GGTNACC	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	304
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	2 cut(s)	197, 303
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	2 cut(s)	13, 136
SetI	ASST	4 cut(s)	108, 136, 211, 244
SfaNI	GCATC	1 cut(s)	119
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	2 cut(s)	42, 180
SsiI	CCGC	3 cut(s)	120, 196, 259
SspMI	CTAG	2 cut(s)	128, 228
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	188
TasI	AATT	2 cut(s)	42, 180
TauI	GCSGC	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseFI	GTSAC	2 cut(s)	91, 188
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	2 cut(s)	91, 188
TspDTI	ATGAA	2 cut(s)	192, 269
VpaK11BI	GGWCC	1 cut(s)	16
XceI	RCATGY	2 cut(s)	196, 223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	2 cut(s)	128, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.