Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Reverse (-)

2254255 .. 2254719

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36024

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTCGAATAAGAGGGTAGTATCATGGAACTCGTTGATTTCTGGTTTCAAAAGAAGTGGTGATGTGAAGTCAGCTTGGAAAGTTGCTTGTGCCTGCGGATATCTAGGAGCTCTTGATCTTGCAAAGTGGACTCATGCTTATATTGAAGAAAATGAAATTAACTGTGACATGCAGCTTGGGACAGCTTTAGTTGACATGTTTGCTAGATGTGGCGACCCTCAAAGTGCAATGAAGGTGTTCGATAACATGGCAAGAAGAGATGTTTCTGCTTGGACAACAGCCATTGGAGCAATGGCCGTGCAAAGAAATGGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

105

Amino Acids

11.54

Weight (kDa)

7.65

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	96
AcoI	YGGCCR	1 cut(s)	294
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	2 cut(s)	49, 146
AluBI	AGCT	4 cut(s)	74, 110, 175, 185
AluI	AGCT	4 cut(s)	74, 110, 175, 185
Alw21I	GWGCWC	1 cut(s)	112
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	172
Asp700I	GAANNNNTTC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	184
BceAI	ACGGC	1 cut(s)	281
BfaI	CTAG	2 cut(s)	104, 204
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
Bse3DI	GCAATG	2 cut(s)	234, 297
BseMI	GCAATG	2 cut(s)	234, 297
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	296
BsrDI	GCAATG	2 cut(s)	234, 297
BssMI	GATC	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	94
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNSI	RCATGY	2 cut(s)	172, 199
BstV1I	GCAGC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	94
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	5 cut(s)	24, 134, 169, 196, 247
CviJI	RGCY	6 cut(s)	74, 110, 175, 185, 281, 296
CviKI_1	RGCY	6 cut(s)	74, 110, 175, 185, 281, 296
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Ecl136II	GAGCTC	1 cut(s)	110
Eco24I	GRGCYC	1 cut(s)	112
Eco32I	GATATC	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	110
EcoRV	GATATC	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	112
FaeI	CATG	5 cut(s)	27, 137, 172, 199, 250
FaiI	YATR	6 cut(s)	25, 135, 141, 170, 197, 248
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	5 cut(s)	23, 133, 168, 195, 246
Fnu4HI	GCNGC	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	2 cut(s)	104, 204
GluI	GCNGC	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	296
Hin1II	CATG	5 cut(s)	27, 137, 172, 199, 250
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	1 cut(s)	130
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	129, 193
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	2 cut(s)	129, 193
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4V	TGCA	4 cut(s)	122, 172, 227, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
Hsp92II	CATG	5 cut(s)	27, 137, 172, 199, 250
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	2 cut(s)	107, 287
LpnPI	CCDG	2 cut(s)	27, 106
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	2 cut(s)	104, 204
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	2 cut(s)	158, 267
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	2 cut(s)	6, 228
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	5 cut(s)	27, 137, 172, 199, 250
NmuCI	GTSAC	1 cut(s)	164
NspI	RCATGY	2 cut(s)	172, 199
PciI	ACATGT	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	174
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PscI	ACATGT	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	112
SacI	GAGCTC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	5 cut(s)	76, 112, 177, 187, 237
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	2 cut(s)	104, 204
SstI	GAGCTC	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	164
TaqI	TCGA	2 cut(s)	5, 240
TasI	AATT	1 cut(s)	156
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	168, 245
XceI	RCATGY	2 cut(s)	172, 199
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	2 cut(s)	104, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.