Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Reverse (-)

61542042 .. 61542523

Gene Structure 482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009989

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAACTCATTGATTTCTGGTTTCGTAAGAAATGGTCATGTGAAGTCAGCTTGGAAATGTTCAGTGAGATGCCAAAGAGTGATCTTGTTTCTTGGAACACTATAATTGGTGCTCTGTTCCAAGAGAGCAAGTTTGGGGAAGCAATTGAACTTTTCAGGGTGATGCAGACTGAGGGAATAAAAGGAGATAGGGTGACCATGGTGGAGGCTGCATCTGCCTGCGGATATCTAGGAGCTCTTGATCTTGCAAAATATGGTGTCCTTCAAAGTGCAATGAAGTTGTTCGATAACATGGCAAGAAGAGATGTTTCTGCTTGGACAGCAGCCATTGGAGCAATGGCCATGGCTGCTGTCCATGCAAGGAAATGGGGAGTGAGCTATAGAGCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

131

Amino Acids

14.59

Weight (kDa)

6.58

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	28 - 66	1.5e-08	PPR repeat family
PPR	PF01535	30 - 60	2.5e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	222
AcoI	YGGCCR	1 cut(s)	339
AgsI	TTSAA	2 cut(s)	149, 266
AluBI	AGCT	4 cut(s)	51, 236, 378, 386
AluI	AGCT	4 cut(s)	51, 236, 378, 386
Alw21I	GWGCWC	2 cut(s)	115, 238
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	3 cut(s)	209, 323, 347
Asp700I	GAANNNNTTC	1 cut(s)	281
AsuHPI	GGTGA	2 cut(s)	172, 205
BalI	TGGCCA	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	238
Bbv12I	GWGCWC	2 cut(s)	115, 238
BbvI	GCAGC	3 cut(s)	196, 334, 335
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	379
BisI	GCNGC	3 cut(s)	210, 324, 348
BlsI	GCNGC	3 cut(s)	211, 325, 349
BmsI	GCATC	3 cut(s)	60, 153, 221
BsaJI	CCNNGG	2 cut(s)	198, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bse3DI	GCAATG	2 cut(s)	279, 342
BseDI	CCNNGG	2 cut(s)	198, 342
BseMI	GCAATG	2 cut(s)	279, 342
BseMII	CTCAG	1 cut(s)	162
BseXI	GCAGC	3 cut(s)	196, 334, 335
BshFI	GGCC	1 cut(s)	341
BsiHKAI	GWGCWC	2 cut(s)	115, 238
BsnI	GGCC	1 cut(s)	341
Bsp1286I	GDGCHC	2 cut(s)	115, 238
Bsp143I	GATC	2 cut(s)	82, 241
Bsp19I	CCATGG	2 cut(s)	198, 342
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	341
BspCNI	CTCAG	1 cut(s)	163
BsrDI	GCAATG	2 cut(s)	279, 342
BssECI	CCNNGG	2 cut(s)	198, 342
BssMI	GATC	2 cut(s)	82, 241
BssT1I	CCWWGG	2 cut(s)	198, 342
Bst6I	CTCTTC	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	171
BstDSI	CCRYGG	2 cut(s)	198, 342
BstEII	GGTNACC	1 cut(s)	193
BstKTI	GATC	2 cut(s)	85, 244
BstMBI	GATC	2 cut(s)	82, 241
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 320, 332, 347, 356
BstPI	GGTNACC	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	379
BstV1I	GCAGC	3 cut(s)	196, 334, 335
BsuRI	GGCC	1 cut(s)	341
BtgI	CCRYGG	2 cut(s)	198, 342
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	220
CviAII	CATG	5 cut(s)	39, 199, 292, 343, 356
CviJI	RGCY	8 cut(s)	51, 209, 236, 326, 341, 347, 378, 386
CviKI_1	RGCY	8 cut(s)	51, 209, 236, 326, 341, 347, 378, 386
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	2 cut(s)	84, 243
DpnII	GATC	2 cut(s)	82, 241
EaeI	YGGCCR	1 cut(s)	339
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Ecl136II	GAGCTC	1 cut(s)	236
Eco130I	CCWWGG	2 cut(s)	198, 342
Eco24I	GRGCYC	1 cut(s)	238
Eco32I	GATATC	1 cut(s)	227
Eco53kI	GAGCTC	1 cut(s)	236
Eco91I	GGTNACC	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	236
EcoO65I	GGTNACC	1 cut(s)	193
EcoRV	GATATC	1 cut(s)	227
EcoT14I	CCWWGG	2 cut(s)	198, 342
EcoT38I	GRGCYC	1 cut(s)	238
ErhI	CCWWGG	2 cut(s)	198, 342
FaeI	CATG	5 cut(s)	42, 202, 295, 346, 359
FaiI	YATR	8 cut(s)	40, 104, 200, 255, 293, 344, 357, 381
FatI	CATG	5 cut(s)	38, 198, 291, 342, 355
Fnu4HI	GCNGC	3 cut(s)	210, 324, 348
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	3 cut(s)	210, 324, 348
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	3 cut(s)	210, 324, 348
HaeIII	GGCC	1 cut(s)	341
Hin1II	CATG	5 cut(s)	42, 202, 295, 346, 359
HphI	GGTGA	2 cut(s)	172, 205
Hpy188III	TCNNGA	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	272
HpyCH4V	TGCA	5 cut(s)	166, 212, 248, 272, 359
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 320, 332, 347, 356
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	5 cut(s)	42, 202, 295, 346, 359
Kzo9I	GATC	2 cut(s)	82, 241
LmnI	GCTCC	2 cut(s)	233, 332
LpnPI	CCDG	3 cut(s)	4, 142, 232
Lsp1109I	GCAGC	3 cut(s)	196, 334, 335
LweI	GCATC	3 cut(s)	60, 153, 221
MaeI	CTAG	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	2 cut(s)	84, 243
MboI	GATC	2 cut(s)	82, 241
MboII	GAAGA	1 cut(s)	312
MfeI	CAATTG	1 cut(s)	144
MhlI	GDGCHC	2 cut(s)	115, 238
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	2 cut(s)	105, 144
MluNI	TGGCCA	1 cut(s)	341
MnlI	CCTC	2 cut(s)	166, 199
Mox20I	TGGCCA	1 cut(s)	341
MroXI	GAANNNNTTC	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	341
Msp20I	TGGCCA	1 cut(s)	341
MunI	CAATTG	1 cut(s)	144
MwoI	GCNNNNNNNGC	5 cut(s)	215, 320, 332, 347, 356
NcoI	CCATGG	2 cut(s)	198, 342
NdeII	GATC	2 cut(s)	82, 241
NlaIII	CATG	5 cut(s)	42, 202, 295, 346, 359
NmuCI	GTSAC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	281
PkrI	GCNGC	3 cut(s)	211, 325, 349
Psp124BI	GAGCTC	1 cut(s)	238
PspEI	GGTNACC	1 cut(s)	193
SacI	GAGCTC	1 cut(s)	238
SatI	GCNGC	3 cut(s)	210, 324, 348
Sau3AI	GATC	2 cut(s)	82, 241
SduI	GDGCHC	2 cut(s)	115, 238
SetI	ASST	4 cut(s)	53, 238, 380, 388
SfaNI	GCATC	3 cut(s)	60, 153, 221
SfcI	CTRYAG	1 cut(s)	379
Sse9I	AATT	2 cut(s)	105, 144
SsiI	CCGC	1 cut(s)	222
SspMI	CTAG	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	238
StyI	CCWWGG	2 cut(s)	198, 342
TaqI	TCGA	1 cut(s)	285
TasI	AATT	2 cut(s)	105, 144
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	3 cut(s)	209, 323, 347
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	70
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.