pycom14g01660
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0003940
Physical Location & Seq
Reverse (-)
1214469 .. 1214756
288 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 288 bp
ATGGTGGCGGCTTTGGCGGAGGACGATCTGGCTCGGTCAACGAGCCAGAGGAGCTGGGGGTCGGGGAGCGAGCAGAGTTGGGCGTCCACGAGTTTCCGGGAAGTGTGGCAGGCACCACCGGATGTGCTCAACAGAAGCGGGCAGCAGGACGACGAGGAGGAGCTGCGGTGGGCGGCGATCCGACGACTGCCGACGTATGACAGGTTGAAAAGAGGGATGCTGAGGCAGGTGCTGGATAACGGGAAGGTGGTGACTGATGAGGTGGACGTGAGGAGGCAGGGAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

96

Amino Acids

10.86

Weight (kDa)

5.11

Isoelectric Point (pI)

71.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 217
Acc36I ACCTGC 1 cut(s) 217
AccB1I GGYRCC 1 cut(s) 112
AciI CCGC 5 cut(s) 8, 17, 138, 166, 173
AclWI GGATC 1 cut(s) 172
AcyI GRCGYC 1 cut(s) 83
AgsI TTSAA 1 cut(s) 208
AjiI CACGTC 1 cut(s) 268
AluBI AGCT 2 cut(s) 54, 163
AluI AGCT 2 cut(s) 54, 163
Alw21I GWGCWC 1 cut(s) 129
AlwI GGATC 1 cut(s) 172
AlwNI CAGNNNCTG 1 cut(s) 232
ApeKI GCWGC 2 cut(s) 142, 163
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 262
BanI GGYRCC 1 cut(s) 112
BauI CACGAG 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 129
BbvCI CCTCAGC 1 cut(s) 221
BbvI GCAGC 2 cut(s) 150, 154
BcnI CCSGG 1 cut(s) 98
BfuAI ACCTGC 1 cut(s) 217
BisI GCNGC 4 cut(s) 9, 143, 164, 174
BlsI GCNGC 4 cut(s) 10, 144, 165, 175
Bme1390I CCNGG 1 cut(s) 98
BmgBI CACGTC 1 cut(s) 268
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 207
Bpu10I CCTNAGC 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 83
BsaWI WCCGGW 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
BseGI GGATG 2 cut(s) 127, 222
BseMII CTCAG 1 cut(s) 212
BseRI GAGGAG 4 cut(s) 64, 170, 173, 286
BseXI GCAGC 2 cut(s) 150, 154
BseYI CCCAGC 1 cut(s) 54
BshNI GGYRCC 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 2 cut(s) 97, 119
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 25, 177
BspACI CCGC 5 cut(s) 8, 17, 138, 166, 173
BspCNI CTCAG 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 114
BspMI ACCTGC 1 cut(s) 217
BspPI GGATC 1 cut(s) 172
BspT107I GGYRCC 1 cut(s) 112
BssMI GATC 2 cut(s) 25, 177
BssNI GRCGYC 1 cut(s) 83
BssSI CACGAG 1 cut(s) 88
Bst2BI CACGAG 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 71, 111, 140
BstDEI CTNAG 1 cut(s) 221
BstF5I GGATG 2 cut(s) 127, 222
BstKTI GATC 2 cut(s) 28, 180
BstMBI GATC 2 cut(s) 25, 177
BstMWI GCNNNNNNNGC 2 cut(s) 14, 51
BstSCI CCNGG 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 150, 154
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 2 cut(s) 127, 222
BveI ACCTGC 1 cut(s) 217
Cac8I GCNNGC 3 cut(s) 71, 111, 140
CaiI CAGNNNCTG 1 cut(s) 232
CseI GACGC 1 cut(s) 72
CviJI RGCY 5 cut(s) 11, 32, 45, 54, 163
CviKI_1 RGCY 5 cut(s) 11, 32, 45, 54, 163
DdeI CTNAG 1 cut(s) 221
DpnI GATC 2 cut(s) 27, 179
DpnII GATC 2 cut(s) 25, 177
EciI GGCGGA 1 cut(s) 32
FaiI YATR 1 cut(s) 198
FauI CCCGC 1 cut(s) 131
Fnu4HI GCNGC 4 cut(s) 9, 143, 164, 174
FokI GGATG 2 cut(s) 134, 229
Fsp4HI GCNGC 4 cut(s) 9, 143, 164, 174
GluI GCNGC 4 cut(s) 9, 143, 164, 174
GsaI CCCAGC 1 cut(s) 58
HapII CCGG 2 cut(s) 97, 119
HgaI GACGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 83
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HpaII CCGG 2 cut(s) 97, 119
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 3 cut(s) 39, 87, 265
Hpy188I TCNGA 1 cut(s) 182
Hpy8I GTNNAC 3 cut(s) 39, 87, 265
Hpy99I CGWCG 3 cut(s) 155, 186, 196
HpyAV CCTTC 1 cut(s) 238
HpyCH4IV ACGT 2 cut(s) 194, 267
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 51
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 2 cut(s) 194, 267
Hsp92I GRCGYC 1 cut(s) 83
Kzo9I GATC 2 cut(s) 25, 177
LmnI GCTCC 3 cut(s) 51, 66, 160
Lsp1109I GCAGC 2 cut(s) 150, 154
LweI GCATC 1 cut(s) 207
MaeII ACGT 2 cut(s) 194, 267
MaeIII GTNAC 1 cut(s) 250
MalI GATC 2 cut(s) 27, 179
MboI GATC 2 cut(s) 25, 177
MhlI GDGCHC 1 cut(s) 129
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 9 cut(s) 13, 42, 148, 151, 206, 216, 253, 264, 267
MspI CCGG 2 cut(s) 97, 119
MspR9I CCNGG 1 cut(s) 98
MwoI GCNNNNNNNGC 2 cut(s) 14, 51
NciI CCSGG 1 cut(s) 98
NdeII GATC 2 cut(s) 25, 177
NlaIV GGNNCC 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 250
PaqCI CACCTGC 1 cut(s) 217
PfoI TCCNGGA 1 cut(s) 96
PkrI GCNGC 4 cut(s) 10, 144, 165, 175
PspFI CCCAGC 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 114
PstNI CAGNNNCTG 1 cut(s) 232
SatI GCNGC 4 cut(s) 9, 143, 164, 174
Sau3AI GATC 2 cut(s) 25, 177
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 129
SetI ASST 8 cut(s) 56, 165, 197, 206, 231, 249, 264, 270
SfaNI GCATC 1 cut(s) 207
SsiI CCGC 5 cut(s) 8, 17, 138, 166, 173
StyD4I CCNGG 1 cut(s) 96
TaiI ACGT 2 cut(s) 197, 270
TaqII GACCGA 1 cut(s) 24
TauI GCSGC 2 cut(s) 11, 176
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 2 cut(s) 142, 163
Tsp45I GTSAC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.