pycom14g12060

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0001567
Physical Location & Seq
Reverse (-)
15143843 .. 15145402
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1221 bp
ATGGGACGTTGTTTTCAAGGTTGGGTATTTTTGTTAGCCGTGCTAGTATTGGCATTAAGCACTCCATGTTCACATGCACATCTGAAACACAAGAAATTTAAGACCAAGACTGGCGTCTACCTCTCCCCTAAGTTTGTGTTGGAACCAGGATTAAGTTCCAGCAAATACTTTTACAACGTTCACTTCCCAAAAGGTCACATTGCCCTAAAGAGTTTCAATGCTGAAATAATTGATGAAGAAGGGAATTCCAGTCCTCTTCATGAAGTCTACCTCCATCACTGGGTTGTTGAAAGATATTATGCTCGGAAAGGTTACGTGGAGCCAGATCAGCAGCTTCCCCAGCAGCTCTCGGAATCGGATGTTATATGGCTGAGGAACAGTGGGATGTGCCAGAATGGTGCTCTTGGACAATATTTTGGACTCGGATCCGAAACACGAAAAACAGCCACACACGTTCCAGGTCATTATGGAATCGAAGTTGGGGATGGTAAAGCGGTTCCTGAAGGGTTTGAGGAGAGATGGATGCTCAACGTGCATGCAATTGATACTAGAGGAGTGGAATATGACCTAGGGTGCACGGAGTGCAGGTGTGATATGTATAACGTGTCCAGGGATCCAAGTGGCCAGCCTCTGCCGGCTGGGTACACCGGGGGTTTGACATGTTGCCCTGATGGTGCAAAGTGCAGACTGAAACAAGGGTTTGATGGTGAAAAGAAAAACCACTACTTGAGATATACTGTGAAGTGGGTTGACTGGTCTGAGTCTGTTGTGCCTGTCAAGGTTTATATCCTTGATGCCACTGATAGAATGAATCATTCAGCACCTGCTGGGGCTAAACACAATTGCCTGGTCGAATATGATGTTGAAAAATCTTGCAATGCCACTAATGGGTGCTTAGACAACAAATGGGCAAAGATTACAATGCCAACTGGTGGTTATGTCATCTATGGTGTAGCCCATCAGCACATTGGGGGGCTTGGTTCAACACTGCATGGAGAGGATGGAAGGGTTTTGTGTTCGTCAACACCAATTTATGGAAAAGGAAAAAAGGCGGGAAATGAGGCTGGTTATATCATTGGAATGACCACTTGTTACCCTCGGCCGGGCTCAGTCAAGATAAAAGATGGAGAGACACTGACTGTAGTTTCTAACTACGAGAGCACTCAGATGCACAGCGGAGTTATGGGTCTCTTCTACATTTTGGTTGCAGAAACACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

407

Amino Acids

44.88

Weight (kDa)

7.25

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 34 - 404 4.4e-173 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 576, 832
Acc36I ACCTGC 2 cut(s) 576, 832
AccB7I CCANNNNNTGG 2 cut(s) 932, 1034
AccI GTMKAC 2 cut(s) 117, 267
AciI CCGC 3 cut(s) 494, 1052, 1176
AclI AACGTT 1 cut(s) 177
AclWI GGATC 4 cut(s) 420, 433, 608, 621
AcoI YGGCCR 2 cut(s) 622, 1100
AcsI RAATTY 2 cut(s) 95, 244
AcuI CTGAAG 1 cut(s) 522
AcyI GRCGYC 1 cut(s) 114
AdeI CACNNNGTG 1 cut(s) 582
AfaI GTAC 1 cut(s) 644
AfiI CCNNNNNNNGG 6 cut(s) 280, 888, 932, 1034, 1102, 1103
AflIII ACRYGT 3 cut(s) 451, 603, 659
AgsI TTSAA 5 cut(s) 17, 217, 290, 866, 984
AjnI CCWGG 4 cut(s) 145, 457, 608, 846
AluBI AGCT 2 cut(s) 334, 346
AluI AGCT 2 cut(s) 334, 346
Alw21I GWGCWC 3 cut(s) 403, 578, 1163
Alw26I GTCTC 2 cut(s) 1124, 1193
Alw44I GTGCAC 1 cut(s) 574
AlwI GGATC 4 cut(s) 420, 433, 608, 621
AlwNI CAGNNNCTG 2 cut(s) 631, 824
AoxI GGCC 2 cut(s) 622, 1100
ApaLI GTGCAC 1 cut(s) 574
ApeKI GCWGC 2 cut(s) 331, 343
ApoI RAATTY 2 cut(s) 95, 244
AspA2I CCTAGG 1 cut(s) 568
AsuC2I CCSGG 2 cut(s) 649, 1104
AsuHPI GGTGA 1 cut(s) 719
AvrII CCTAGG 1 cut(s) 568
BaeGI GKGCMC 1 cut(s) 578
BalI TGGCCA 1 cut(s) 624
BamHI GGATCC 2 cut(s) 425, 613
BanII GRGCYC 1 cut(s) 1109
Bbv12I GWGCWC 3 cut(s) 403, 578, 1163
BbvCI CCTCAGC 1 cut(s) 371
BbvI GCAGC 2 cut(s) 343, 355
BccI CCATC 8 cut(s) 282, 479, 513, 665, 698, 966, 995, 1118
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 4 cut(s) 147, 459, 610, 848
BcnI CCSGG 2 cut(s) 649, 1104
BcoDI GTCTC 2 cut(s) 1124, 1193
BfaI CTAG 3 cut(s) 44, 549, 569
BfmI CTRYAG 1 cut(s) 1140
BfuAI ACCTGC 2 cut(s) 576, 832
BisI GCNGC 2 cut(s) 332, 344
BlnI CCTAGG 1 cut(s) 568
BlsI GCNGC 2 cut(s) 333, 345
Bme1390I CCNGG 6 cut(s) 147, 459, 610, 649, 848, 1104
BmiI GGNNCC 5 cut(s) 144, 321, 427, 498, 615
BmrFI CCNGG 6 cut(s) 147, 459, 610, 649, 848, 1104
BmrI ACTGGG 1 cut(s) 289
BmsI GCATC 3 cut(s) 513, 784, 1158
BmuI ACTGGG 1 cut(s) 289
BoxI GACNNNNGTC 1 cut(s) 113
Bpu10I CCTNAGC 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 748
BpuMI CCSGG 2 cut(s) 649, 1104
BsaAI YACGTR 1 cut(s) 316
BsaHI GRCGYC 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 1193
BsaJI CCNNGG 4 cut(s) 568, 609, 648, 1097
BsaXI ACNNNNNCTCC 2 cut(s) 572, 602
Bsc4I CCNNNNNNNGG 6 cut(s) 280, 888, 932, 1034, 1102, 1103
Bse118I RCCGGY 1 cut(s) 634
Bse1I ACTGG 5 cut(s) 115, 249, 284, 758, 934
Bse3DI GCAATG 2 cut(s) 198, 883
BseBI CCWGG 4 cut(s) 147, 459, 610, 848
BseDI CCNNGG 4 cut(s) 568, 609, 648, 1097
BseGI GGATG 5 cut(s) 364, 390, 490, 528, 1006
BseLI CCNNNNNNNGG 6 cut(s) 280, 888, 932, 1034, 1102, 1103
BseMI GCAATG 2 cut(s) 198, 883
BseMII CTCAG 4 cut(s) 362, 750, 1122, 1178
BseNI ACTGG 5 cut(s) 115, 249, 284, 758, 934
BseRI GAGGAG 2 cut(s) 527, 567
BseSI GKGCMC 1 cut(s) 578
BseX3I CGGCCG 1 cut(s) 1100
BseXI GCAGC 2 cut(s) 343, 355
BseYI CCCAGC 3 cut(s) 339, 638, 827
BsgI GTGCAG 2 cut(s) 604, 703
Bsh1285I CGRYCG 1 cut(s) 1103
BshFI GGCC 2 cut(s) 624, 1102
BsiEI CGRYCG 1 cut(s) 1103
BsiHKAI GWGCWC 3 cut(s) 403, 578, 1163
BsiSI CCGG 3 cut(s) 635, 648, 1103
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 6 cut(s) 280, 888, 932, 1034, 1102, 1103
BsmAI GTCTC 2 cut(s) 1124, 1193
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 2 cut(s) 624, 1102
Bso31I GGTCTC 1 cut(s) 1193
Bsp1286I GDGCHC 4 cut(s) 403, 578, 1109, 1163
Bsp143I GATC 3 cut(s) 325, 425, 613
BspACI CCGC 3 cut(s) 494, 1052, 1176
BspANI GGCC 2 cut(s) 624, 1102
BspCNI CTCAG 4 cut(s) 363, 751, 1121, 1177
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 5 cut(s) 144, 321, 427, 498, 615
BspMI ACCTGC 2 cut(s) 576, 832
BspPI GGATC 4 cut(s) 420, 433, 608, 621
BspTNI GGTCTC 1 cut(s) 1193
BsrDI GCAATG 2 cut(s) 198, 883
BsrFI RCCGGY 1 cut(s) 634
BsrI ACTGG 5 cut(s) 115, 249, 284, 758, 934
BssAI RCCGGY 1 cut(s) 634
BssECI CCNNGG 4 cut(s) 568, 609, 648, 1097
BssMI GATC 3 cut(s) 325, 425, 613
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 568
Bst2UI CCWGG 4 cut(s) 147, 459, 610, 848
Bst4CI ACNGT 3 cut(s) 380, 739, 1141
Bst6I CTCTTC 2 cut(s) 261, 1196
BstACI GRCGYC 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 582
BstBAI YACGTR 1 cut(s) 316
BstC8I GCNNGC 3 cut(s) 537, 626, 636
BstDEI CTNAG 6 cut(s) 129, 371, 759, 895, 1108, 1164
BstF5I GGATG 5 cut(s) 364, 390, 490, 528, 1006
BstKTI GATC 3 cut(s) 328, 428, 616
BstMAI GTCTC 2 cut(s) 1124, 1193
BstMBI GATC 3 cut(s) 325, 425, 613
BstMCI CGRYCG 1 cut(s) 1103
BstMWI GCNNNNNNNGC 4 cut(s) 328, 340, 532, 582
BstNI CCWGG 4 cut(s) 147, 459, 610, 848
BstNSI RCATGY 3 cut(s) 77, 539, 663
BstPAI GACNNNNGTC 1 cut(s) 113
BstSCI CCNGG 6 cut(s) 145, 457, 608, 647, 846, 1102
BstSFI CTRYAG 1 cut(s) 1140
BstSLI GKGCMC 1 cut(s) 578
BstV1I GCAGC 2 cut(s) 343, 355
BstX2I RGATCY 2 cut(s) 425, 613
BstYI RGATCY 2 cut(s) 425, 613
BstZI CGGCCG 1 cut(s) 1100
BsuRI GGCC 2 cut(s) 624, 1102
BtsCI GGATG 5 cut(s) 364, 390, 490, 528, 1006
BtsI GCAGTG 1 cut(s) 986
BtsIMutI CAGTG 5 cut(s) 277, 385, 798, 986, 1133
BveI ACCTGC 2 cut(s) 576, 832
Cac8I GCNNGC 3 cut(s) 537, 626, 636
CaiI CAGNNNCTG 2 cut(s) 631, 824
CciI TCATGA 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 634
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 643
CviAII CATG 6 cut(s) 66, 74, 260, 536, 660, 992
CviQI GTAC 1 cut(s) 643
DdeI CTNAG 6 cut(s) 129, 371, 759, 895, 1108, 1164
DpnI GATC 3 cut(s) 327, 427, 615
DpnII GATC 3 cut(s) 325, 425, 613
DraIII CACNNNGTG 1 cut(s) 582
EaeI YGGCCR 2 cut(s) 622, 1100
EagI CGGCCG 1 cut(s) 1100
Eam1104I CTCTTC 2 cut(s) 261, 1196
EarI CTCTTC 2 cut(s) 261, 1196
EclXI CGGCCG 1 cut(s) 1100
Eco130I CCWWGG 1 cut(s) 568
Eco24I GRGCYC 1 cut(s) 1109
Eco31I GGTCTC 1 cut(s) 1193
Eco52I CGGCCG 1 cut(s) 1100
Eco57I CTGAAG 1 cut(s) 522
EcoRI GAATTC 1 cut(s) 244
EcoRII CCWGG 4 cut(s) 145, 457, 608, 846
EcoT14I CCWWGG 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 1109
ErhI CCWWGG 1 cut(s) 568
FaeI CATG 6 cut(s) 69, 77, 263, 539, 663, 995
FaqI GGGAC 1 cut(s) 18
FatI CATG 6 cut(s) 65, 73, 259, 535, 659, 991
FauI CCCGC 1 cut(s) 1045
FblI GTMKAC 2 cut(s) 117, 267
Fnu4HI GCNGC 2 cut(s) 332, 344
FokI GGATG 5 cut(s) 371, 397, 497, 535, 1013
FriOI GRGCYC 1 cut(s) 1109
Fsp4HI GCNGC 2 cut(s) 332, 344
FspBI CTAG 3 cut(s) 44, 549, 569
GluI GCNGC 2 cut(s) 332, 344
GsaI CCCAGC 3 cut(s) 343, 642, 831
HaeIII GGCC 2 cut(s) 624, 1102
HapII CCGG 3 cut(s) 635, 648, 1103
HgaI GACGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 6 cut(s) 69, 77, 263, 539, 663, 995
HincII GTYRAC 2 cut(s) 751, 1023
HindII GTYRAC 2 cut(s) 751, 1023
HinfI GANTC 5 cut(s) 353, 420, 471, 761, 811
HpaII CCGG 3 cut(s) 635, 648, 1103
HphI GGTGA 1 cut(s) 719
Hpy166II GTNNAC 8 cut(s) 71, 118, 181, 268, 576, 645, 751, 1023
Hpy188I TCNGA 8 cut(s) 84, 306, 352, 358, 425, 430, 760, 1167
Hpy188III TCNNGA 3 cut(s) 260, 500, 1114
Hpy8I GTNNAC 8 cut(s) 71, 118, 181, 268, 576, 645, 751, 1023
HpyAV CCTTC 3 cut(s) 233, 497, 999
HpyCH4III ACNGT 3 cut(s) 380, 739, 1141
HpyCH4IV ACGT 6 cut(s) 7, 177, 315, 453, 531, 603
HpyF10VI GCNNNNNNNGC 4 cut(s) 328, 340, 532, 582
HpyF3I CTNAG 6 cut(s) 129, 371, 759, 895, 1108, 1164
HpySE526I ACGT 6 cut(s) 7, 177, 315, 453, 531, 603
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 6 cut(s) 69, 77, 263, 539, 663, 995
KroI GCCGGC 1 cut(s) 634
KroNI GCCGGC 1 cut(s) 636
Kzo9I GATC 3 cut(s) 325, 425, 613
LmnI GCTCC 1 cut(s) 319
Lsp1109I GCAGC 2 cut(s) 343, 355
LweI GCATC 3 cut(s) 513, 784, 1158
MaeI CTAG 3 cut(s) 44, 549, 569
MaeII ACGT 6 cut(s) 7, 177, 315, 453, 531, 603
MaeIII GTNAC 3 cut(s) 194, 311, 1091
MalI GATC 3 cut(s) 327, 427, 615
MboI GATC 3 cut(s) 325, 425, 613
MboII GAAGA 3 cut(s) 248, 248, 1183
MfeI CAATTG 2 cut(s) 540, 841
MflI RGATCY 2 cut(s) 425, 613
MhlI GDGCHC 4 cut(s) 403, 578, 1109, 1163
MlsI TGGCCA 1 cut(s) 624
MluCI AATT 6 cut(s) 95, 228, 244, 540, 841, 1029
MluNI TGGCCA 1 cut(s) 624
MlyI GAGTC 2 cut(s) 414, 770
MmeI TCCRAC 1 cut(s) 120
Mox20I TGGCCA 1 cut(s) 624
MroNI GCCGGC 1 cut(s) 634
MscI TGGCCA 1 cut(s) 624
MseI TTAA 3 cut(s) 56, 99, 152
MslI CAYNNNNRTG 2 cut(s) 1079, 1166
Msp20I TGGCCA 1 cut(s) 624
MspA1I CMGCKG 1 cut(s) 1176
MspI CCGG 3 cut(s) 635, 648, 1103
MspR9I CCNGG 6 cut(s) 147, 459, 610, 649, 848, 1104
MunI CAATTG 2 cut(s) 540, 841
MvaI CCWGG 4 cut(s) 147, 459, 610, 848
MwoI GCNNNNNNNGC 4 cut(s) 328, 340, 532, 582
NaeI GCCGGC 1 cut(s) 636
NciI CCSGG 2 cut(s) 649, 1104
NdeII GATC 3 cut(s) 325, 425, 613
NgoMIV GCCGGC 1 cut(s) 634
NlaIII CATG 6 cut(s) 69, 77, 263, 539, 663, 995
NlaIV GGNNCC 5 cut(s) 144, 321, 427, 498, 615
NmeAIII GCCGAG 1 cut(s) 1078
NmuCI GTSAC 1 cut(s) 194
NspI RCATGY 3 cut(s) 77, 539, 663
PaeI GCATGC 1 cut(s) 539
PagI TCATGA 1 cut(s) 259
PaqCI CACCTGC 2 cut(s) 576, 832
PciI ACATGT 1 cut(s) 659
PdiI GCCGGC 1 cut(s) 636
PfeI GAWTC 3 cut(s) 353, 471, 811
PflMI CCANNNNNTGG 2 cut(s) 932, 1034
PkrI GCNGC 2 cut(s) 333, 345
PleI GAGTC 2 cut(s) 414, 769
PpsI GAGTC 2 cut(s) 414, 769
Ppu21I YACGTR 1 cut(s) 316
PscI ACATGT 1 cut(s) 659
PshAI GACNNNNGTC 1 cut(s) 113
Psp1406I AACGTT 1 cut(s) 177
Psp6I CCWGG 4 cut(s) 145, 457, 608, 846
PspFI CCCAGC 3 cut(s) 339, 638, 827
PspGI CCWGG 4 cut(s) 145, 457, 608, 846
PspN4I GGNNCC 5 cut(s) 144, 321, 427, 498, 615
PstNI CAGNNNCTG 2 cut(s) 631, 824
PsuI RGATCY 2 cut(s) 425, 613
RsaI GTAC 1 cut(s) 644
RsaNI GTAC 1 cut(s) 643
RseI CAYNNNNRTG 2 cut(s) 1079, 1166
SaqAI TTAA 3 cut(s) 56, 99, 152
SatI GCNGC 2 cut(s) 332, 344
Sau3AI GATC 3 cut(s) 325, 425, 613
SchI GAGTC 2 cut(s) 414, 770
ScrFI CCNGG 6 cut(s) 147, 459, 610, 649, 848, 1104
SduI GDGCHC 4 cut(s) 403, 578, 1109, 1163
SfaNI GCATC 3 cut(s) 513, 784, 1158
SfcI CTRYAG 1 cut(s) 1140
SmiMI CAYNNNNRTG 2 cut(s) 1079, 1166
SmlI CTYRAG 1 cut(s) 727
SmoI CTYRAG 1 cut(s) 727
SphI GCATGC 1 cut(s) 539
Sse9I AATT 6 cut(s) 95, 228, 244, 540, 841, 1029
SsiI CCGC 3 cut(s) 494, 1052, 1176
SspI AATATT 1 cut(s) 413
SspMI CTAG 3 cut(s) 44, 549, 569
StyD4I CCNGG 6 cut(s) 145, 457, 608, 647, 846, 1102
StyI CCWWGG 1 cut(s) 568
TaaI ACNGT 3 cut(s) 380, 739, 1141
TaiI ACGT 6 cut(s) 10, 180, 318, 456, 534, 606
TaqI TCGA 2 cut(s) 474, 852
TasI AATT 6 cut(s) 95, 228, 244, 540, 841, 1029
TfiI GAWTC 3 cut(s) 353, 471, 811
Tru1I TTAA 3 cut(s) 56, 99, 152
Tru9I TTAA 3 cut(s) 56, 99, 152
TscAI CASTG 5 cut(s) 284, 385, 805, 993, 1140
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 2 cut(s) 331, 343
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 4 cut(s) 248, 249, 276, 824
TspGWI ACGGA 1 cut(s) 593
TspRI CASTG 5 cut(s) 284, 385, 805, 993, 1140
Van91I CCANNNNNTGG 2 cut(s) 932, 1034
VneI GTGCAC 1 cut(s) 574
XapI RAATTY 2 cut(s) 95, 244
XceI RCATGY 3 cut(s) 77, 539, 663
XcmI CCANNNNNNNNNTGG 1 cut(s) 965
XmaJI CCTAGG 1 cut(s) 568
XmiI GTMKAC 2 cut(s) 117, 267
XspI CTAG 3 cut(s) 44, 549, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.