Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Reverse (-)

16560982 .. 16561590

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGTGATAGTGTGCTTCACATTGAGCTCCGCCGTTGGGCGGATATCTTGGTTATCGCCCCATTGTCAGCAAACACACTAGGCAAGATTGCCGGGGGATTGTGTGACAATCTACTGACATGCATCGTACGAGCATGGGACTACAGCAAGCCTTTCTTCGTCGCACCAGCCATGAATACCTTGATGTGGAAGAACCCCTTCACAGAGCGACATATCATGTTGATTGATGAACTTGGAGTTTCGCTCATCCCACCAGTCACAAAGAGGCTGGCTTGTGGAGATTACGGGAATGGAGCAATGGCCGAACCTTCTTTGATTTATTCCACTGTAAGACTCTTTTTCGAGTCACGAGTTCAACAAGGCGGCAATAACGTTCAGCAACCAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0042538 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

130

Amino Acids

14.28

Weight (kDa)

6.71

Isoelectric Point (pI)

58.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavoprotein	PF02441	5 - 108	5.5e-19	Flavoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	31, 41, 363
AclI	AACGTT	1 cut(s)	372
AcoI	YGGCCR	1 cut(s)	300
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	3 cut(s)	37, 40, 186
AgsI	TTSAA	1 cut(s)	356
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw21I	GWGCWC	1 cut(s)	30
AoxI	GGCC	1 cut(s)	300
Asp700I	GAANNNNTTC	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	30
BauI	CACGAG	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	30
BceAI	ACGGC	1 cut(s)	18
BcnI	CCSGG	1 cut(s)	94
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	365
Bme1390I	CCNGG	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	1 cut(s)	132
BplI	GAGNNNNNCTC	2 cut(s)	228, 260
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 40, 186
Bse1I	ACTGG	2 cut(s)	254, 383
Bse3DI	GCAATG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	3 cut(s)	37, 40, 186
BseMI	GCAATG	1 cut(s)	303
BseNI	ACTGG	2 cut(s)	254, 383
BshFI	GGCC	1 cut(s)	302
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	93
BsiWI	CGTACG	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	3 cut(s)	37, 40, 186
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	30
BspACI	CCGC	3 cut(s)	31, 41, 363
BspANI	GGCC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	254, 383
BssECI	CCNNGG	1 cut(s)	93
BssSI	CACGAG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	328
BstC8I	GCNNGC	2 cut(s)	149, 270
BstF5I	GGATG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	149, 270
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	4 cut(s)	120, 135, 172, 217
CviJI	RGCY	6 cut(s)	28, 151, 170, 268, 272, 302
CviKI_1	RGCY	6 cut(s)	28, 151, 170, 268, 272, 302
CviQI	GTAC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	300
EciI	GGCGGA	2 cut(s)	20, 56
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	28
EcoICRI	GAGCTC	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	30
FaeI	CATG	4 cut(s)	123, 138, 175, 220
FaiI	YATR	6 cut(s)	121, 136, 173, 213, 218, 388
FalI	AAGNNNNNCTT	4 cut(s)	140, 172, 182, 214
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	4 cut(s)	119, 134, 171, 216
Fnu4HI	GCNGC	1 cut(s)	364
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	364
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	1 cut(s)	364
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	4 cut(s)	123, 138, 175, 220
HinfI	GANTC	2 cut(s)	333, 344
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	17
Hpy188III	TCNNGA	1 cut(s)	348
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	208, 318
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	4 cut(s)	123, 138, 175, 220
LmnI	GCTCC	2 cut(s)	33, 293
LpnPI	CCDG	4 cut(s)	106, 180, 254, 267
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	3 cut(s)	104, 256, 345
MboII	GAAGA	2 cut(s)	148, 202
MhlI	GDGCHC	1 cut(s)	30
MlyI	GAGTC	2 cut(s)	327, 353
MnlI	CCTC	1 cut(s)	258
Mph1103I	ATGCAT	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	197
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	94
NciI	CCSGG	1 cut(s)	94
NlaIII	CATG	4 cut(s)	123, 138, 175, 220
NmuCI	GTSAC	3 cut(s)	104, 256, 345
NsiI	ATGCAT	1 cut(s)	125
NspI	RCATGY	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	197
Pfl23II	CGTACG	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	365
PleI	GAGTC	2 cut(s)	327, 352
PpsI	GAGTC	2 cut(s)	327, 352
Psp124BI	GAGCTC	1 cut(s)	30
Psp1406I	AACGTT	1 cut(s)	372
PspLI	CGTACG	1 cut(s)	127
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SacI	GAGCTC	1 cut(s)	30
SatI	GCNGC	1 cut(s)	364
SchI	GAGTC	2 cut(s)	327, 353
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	4 cut(s)	30, 182, 310, 375
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	1 cut(s)	142
SsiI	CCGC	3 cut(s)	31, 41, 363
SspMI	CTAG	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	1 cut(s)	342
TauI	GCSGC	1 cut(s)	366
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	3 cut(s)	104, 256, 345
Tsp45I	GTSAC	3 cut(s)	104, 256, 345
TspDTI	ATGAA	2 cut(s)	188, 243
TspRI	CASTG	1 cut(s)	331
XceI	RCATGY	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.