Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Reverse (-)

36057779 .. 36058129

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTCTTCTGCTGCTCAACCTCCCACGATTCCTCTCCTCACTCCCTACAAATTGGGAAACTTCAATCTTTCTCATAGGTACTTAAAACTTTCATACATTGTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTGCTGGTGATTATGATAGGGAAGATGGGAACAATGCTGTGGCTGAGGGCTGTGCAGATCTTATTGCTTATGGTTGTTCGTTCTTGGCTAACCCAGACTTGCCGAAGAGGTTTGAGCTCAATGCTCCTCTGAACAAGTACAACAGAAACACATTCTACGTGCCTGAACCGGTTATGGGCTACGCTGATTATCCATTCCTGGACACCATTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

117

Amino Acids

12.92

Weight (kDa)

5.69

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	14 - 89	6.6e-08	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	125
AfaI	GTAC	4 cut(s)	80, 102, 127, 275
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgeI	ACCGGT	1 cut(s)	304
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Alw21I	GWGCWC	1 cut(s)	255
ApeKI	GCWGC	2 cut(s)	11, 137
AsiGI	ACCGGT	1 cut(s)	304
Asp718I	GGTACC	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	255
BbvCI	CCTCAGC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	335
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	2 cut(s)	12, 138
BlsI	GCNGC	2 cut(s)	13, 139
Bme1390I	CCNGG	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	335
Bpu10I	CCTNAGC	1 cut(s)	180
BsaAI	YACGTR	1 cut(s)	295
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse118I	RCCGGY	1 cut(s)	304
Bse3DI	GCAATG	2 cut(s)	132, 342
BseBI	CCWGG	1 cut(s)	335
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMI	GCAATG	2 cut(s)	132, 342
BseMII	CTCAG	1 cut(s)	171
BseRI	GAGGAG	2 cut(s)	26, 252
BseXI	GCAGC	1 cut(s)	124
BsgI	GTGCAG	1 cut(s)	210
BshNI	GGYRCC	1 cut(s)	125
BshTI	ACCGGT	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	127
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	2 cut(s)	132, 342
BsrFI	RCCGGY	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	304
BssMI	GATC	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	236
BstBAI	YACGTR	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	180
BstKTI	GATC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	193
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	304
Csp6I	GTAC	4 cut(s)	79, 101, 126, 274
CspAI	ACCGGT	1 cut(s)	304
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	6 cut(s)	116, 179, 186, 224, 253, 315
CviKI_1	RGCY	6 cut(s)	116, 179, 186, 224, 253, 315
CviQI	GTAC	4 cut(s)	79, 101, 126, 274
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	1 cut(s)	109
FaiI	YATR	7 cut(s)	75, 94, 107, 150, 207, 311, 349
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	12, 138
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	12, 138
GluI	GCNGC	2 cut(s)	12, 138
HapII	CCGG	1 cut(s)	305
Hin1II	CATG	1 cut(s)	109
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	267
HpyAV	CCTTC	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	2 cut(s)	191, 347
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	109
KpnI	GGTACC	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	193
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	6 cut(s)	126, 243, 312, 318, 320, 347
Lsp1109I	GCAGC	1 cut(s)	124
MaeII	ACGT	1 cut(s)	294
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	2 cut(s)	170, 253
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	1 cut(s)	50
MnlI	CCTC	6 cut(s)	30, 42, 47, 175, 237, 273
MseI	TTAA	2 cut(s)	83, 120
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	335
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	28
PfoI	TCCNGGA	1 cut(s)	333
PinAI	ACCGGT	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	13, 139
Ppu21I	YACGTR	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	4 cut(s)	80, 102, 127, 275
RsaNI	GTAC	4 cut(s)	79, 101, 126, 274
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	83, 120
SatI	GCNGC	2 cut(s)	12, 138
Sau3AI	GATC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	6 cut(s)	22, 80, 131, 248, 255, 297
Sse9I	AATT	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	333
TaiI	ACGT	1 cut(s)	297
TasI	AATT	1 cut(s)	50
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	2 cut(s)	83, 120
Tru9I	TTAA	2 cut(s)	83, 120
TseI	GCWGC	2 cut(s)	11, 137
TspDTI	ATGAA	2 cut(s)	81, 121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.