Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Reverse (-)

36105909 .. 36110868

Gene Structure 4960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGGGTCCTGTATTCATTCATTCATTCCTTCCTTCCTTCGTTCATCCCAGAATCCAGTATACAAGGCCAAGTGCAAGATCAGGTGGCGGACGACCGACTCGAATTCTGAGATGTCTTCTGCTGCTCAACCTCCCACGATTCCTCTCCTCACTCCCTACAAATTGGGAAACTTCAATCTTTCTCATAGAATTGTTTTAGCACCATTGACCAGACGGAGATCATACAACAATGTTCCTCAACCACATGCTATCTTATATTACTCTCAGAGAACGTCGAACGGGGGTCTTCTCATAGCTGAAGCCACTGGAGTTTCAGACACAGCTCAAGGGTACCCGCACACACCTGGTATATGGACAAAGGAGCAAGTTGAAGCCTGGAAACCCATTGTTGATGCTGTTCATGCTAAAGGTGGCGTCTTCTTCTGTCAGATTTGGCATGTTGGAAGGGTTTCTAATAGCGGTTATCAACCAAATGGGCAAGCTCCAATATCTTCTACTGACAAGCCGATACGATTAAATGGCACTGATGCTTCTGAATTCACGCCTCCAAGACGTTTAAGGACAGATGAAATTCCACAAATTGTCAATGATTTTAGACTTGCTGCAAGGAATGCTATTGAAGCTGGCTTCGATGGAGTTGAAATTCATGGAGCGCATGGCTACCTTCTTGATCAGTTTCTGAAAGATCATGTGAATGATCGAACAGACCAATATGGTGGATCTCTAGAGAATCGTTGCCGCCTTCCTCTGGAAGTTGTTGAAGCTGTCGTTAACGAAATAGGAGCAGATAAAGTTGGAATTAGATTATGTCCATTTGCTGACTATATGGACTCAGGGGATTCAAATCCAAAAGAATTAGGCCTCTATATGGCCAATGCCTTGAACAAATATGGAATCATGTACTGCCACCTCATGGTCGAGCCAAGGATGAATACAGTTGGAGAAATAGCTGAAACCCGCCAGAGTCTTCTTCCCATGAGAAAGGCTTTCCATGGTAACTTCATTGCTGGTGGTGGTTATGACAGGGAAGATGGAAACAATGCTGTGGCCGAGGGCTGTGCAGATCTACTTGCTTATGGCCGTATTTTCTTGGCGAATCCGGATTTGCCAAAGAGATTTGAACTTAATGCTCCTCTAAACAAGTACAACAGAGAGACATTCTACACACCTGATCCCGTCATTGGTTACACTGATTATCCATTTCTTGAAGCCAACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

407

Amino Acids

45.16

Weight (kDa)

6.6

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	49 - 379	6.9e-86	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	330
AccB1I	GGYRCC	1 cut(s)	330
AccB7I	CCANNNNNTGG	1 cut(s)	913
AccI	GTMKAC	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	1099
AciI	CCGC	5 cut(s)	88, 335, 459, 739, 958
AclWI	GGATC	2 cut(s)	727, 1166
AcoI	YGGCCR	3 cut(s)	870, 1047, 1078
AcsI	RAATTY	4 cut(s)	103, 536, 570, 642
AcuI	CTGAAG	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	414
AfaI	GTAC	3 cut(s)	332, 902, 1145
AfiI	CCNNNNNNNGG	4 cut(s)	748, 868, 913, 1181
AgsI	TTSAA	9 cut(s)	175, 371, 620, 641, 761, 843, 883, 1121, 1208
AjnI	CCWGG	2 cut(s)	343, 374
AluBI	AGCT	6 cut(s)	296, 323, 482, 623, 764, 950
AluI	AGCT	6 cut(s)	296, 323, 482, 623, 764, 950
Alw26I	GTCTC	1 cut(s)	1148
AlwI	GGATC	2 cut(s)	727, 1166
AlwNI	CAGNNNCTG	1 cut(s)	679
Aor13HI	TCCGGA	1 cut(s)	1099
AoxI	GGCC	5 cut(s)	66, 859, 870, 1047, 1078
ApeKI	GCWGC	2 cut(s)	122, 602
ApoI	RAATTY	4 cut(s)	103, 536, 570, 642
Asp700I	GAANNNNTTC	1 cut(s)	448
Asp718I	GGTACC	1 cut(s)	330
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	6
BalI	TGGCCA	1 cut(s)	872
BanI	GGYRCC	1 cut(s)	330
BbsI	GAAGAC	4 cut(s)	108, 278, 409, 959
BbvI	GCAGC	2 cut(s)	109, 589
BccI	CCATC	2 cut(s)	626, 1025
BceAI	ACGGC	1 cut(s)	1065
BcgI	CGANNNNNNTGC	2 cut(s)	1040, 1074
BciT130I	CCWGG	2 cut(s)	345, 376
BclI	TGATCA	1 cut(s)	670
BcoDI	GTCTC	1 cut(s)	1148
BfaI	CTAG	1 cut(s)	725
BglII	AGATCT	1 cut(s)	1063
BisI	GCNGC	3 cut(s)	123, 603, 739
BlsI	GCNGC	3 cut(s)	124, 604, 740
Bme1390I	CCNGG	2 cut(s)	345, 376
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	2 cut(s)	7, 332
BmrFI	CCNGG	2 cut(s)	345, 376
BmsI	GCATC	2 cut(s)	382, 517
BpiI	GAAGAC	4 cut(s)	108, 278, 409, 959
BpmI	CTGGAG	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	309
BsaBI	GATNNNNATC	1 cut(s)	843
BsaHI	GRCGYC	1 cut(s)	414
BsaJI	CCNNGG	3 cut(s)	923, 991, 1050
BsaWI	WCCGGW	1 cut(s)	1099
Bsc4I	CCNNNNNNNGG	4 cut(s)	748, 868, 913, 1181
Bse1I	ACTGG	2 cut(s)	56, 310
Bse3DI	GCAATG	1 cut(s)	1002
Bse8I	GATNNNNATC	1 cut(s)	843
BseAI	TCCGGA	1 cut(s)	1099
BseBI	CCWGG	2 cut(s)	345, 376
BseDI	CCNNGG	3 cut(s)	923, 991, 1050
BseGI	GGATG	2 cut(s)	44, 933
BseJI	GATNNNNATC	1 cut(s)	843
BseLI	CCNNNNNNNGG	4 cut(s)	748, 868, 913, 1181
BseMI	GCAATG	1 cut(s)	1002
BseMII	CTCAG	3 cut(s)	99, 278, 846
BseNI	ACTGG	2 cut(s)	56, 310
BseRI	GAGGAG	2 cut(s)	137, 1122
BseXI	GCAGC	2 cut(s)	109, 589
BsgI	GTGCAG	1 cut(s)	1080
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	5 cut(s)	68, 861, 872, 1049, 1080
BshNI	GGYRCC	1 cut(s)	330
BsiEI	CGRYCG	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	1100
BslI	CCNNNNNNNGG	4 cut(s)	748, 868, 913, 1181
BsmAI	GTCTC	1 cut(s)	1148
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	5 cut(s)	68, 861, 872, 1049, 1080
Bsp13I	TCCGGA	1 cut(s)	1099
Bsp143I	GATC	8 cut(s)	78, 218, 670, 685, 697, 719, 1063, 1171
Bsp19I	CCATGG	1 cut(s)	991
BspACI	CCGC	5 cut(s)	88, 335, 459, 739, 958
BspANI	GGCC	5 cut(s)	68, 861, 872, 1049, 1080
BspCNI	CTCAG	3 cut(s)	100, 277, 845
BspEI	TCCGGA	1 cut(s)	1099
BspLI	GGNNCC	2 cut(s)	7, 332
BspPI	GGATC	2 cut(s)	727, 1166
BspT107I	GGYRCC	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	1002
BsrI	ACTGG	2 cut(s)	56, 310
BssECI	CCNNGG	3 cut(s)	923, 991, 1050
BssMI	GATC	8 cut(s)	78, 218, 670, 685, 697, 719, 1063, 1171
BssNAI	GTATAC	1 cut(s)	61
BssNI	GRCGYC	1 cut(s)	414
BssT1I	CCWWGG	2 cut(s)	923, 991
Bst1107I	GTATAC	1 cut(s)	61
Bst2UI	CCWGG	2 cut(s)	345, 376
Bst4CI	ACNGT	1 cut(s)	937
BstACI	GRCGYC	1 cut(s)	414
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstC8I	GCNNGC	2 cut(s)	480, 625
BstDEI	CTNAG	3 cut(s)	108, 264, 832
BstDSI	CCRYGG	1 cut(s)	991
BstF5I	GGATG	2 cut(s)	44, 933
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	8 cut(s)	81, 221, 673, 688, 700, 722, 1066, 1174
BstMAI	GTCTC	1 cut(s)	1148
BstMBI	GATC	8 cut(s)	78, 218, 670, 685, 697, 719, 1063, 1171
BstMCI	CGRYCG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	3 cut(s)	401, 611, 620
BstNI	CCWGG	2 cut(s)	345, 376
BstNSI	RCATGY	2 cut(s)	248, 440
BstSCI	CCNGG	2 cut(s)	343, 374
BstV1I	GCAGC	2 cut(s)	109, 589
BstV2I	GAAGAC	4 cut(s)	108, 278, 409, 959
BstX2I	RGATCY	2 cut(s)	719, 1063
BstXI	CCANNNNNNTGG	1 cut(s)	716
BstYI	RGATCY	2 cut(s)	719, 1063
BstZ17I	GTATAC	1 cut(s)	61
BsuRI	GGCC	5 cut(s)	68, 861, 872, 1049, 1080
BtgI	CCRYGG	1 cut(s)	991
BtsCI	GGATG	2 cut(s)	44, 933
BtsIMutI	CAGTG	3 cut(s)	303, 522, 1188
Cac8I	GCNNGC	2 cut(s)	480, 625
CaiI	CAGNNNCTG	1 cut(s)	679
CfoI	GCGC	1 cut(s)	655
Cfr13I	GGNCC	1 cut(s)	6
CseI	GACGC	1 cut(s)	403
CsiI	ACCWGGT	1 cut(s)	343
Csp6I	GTAC	3 cut(s)	331, 901, 1144
CviQI	GTAC	3 cut(s)	331, 901, 1144
DdeI	CTNAG	3 cut(s)	108, 264, 832
DpnI	GATC	8 cut(s)	80, 220, 672, 687, 699, 721, 1065, 1173
DpnII	GATC	8 cut(s)	78, 218, 670, 685, 697, 719, 1063, 1171
EaeI	YGGCCR	3 cut(s)	870, 1047, 1078
EciI	GGCGGA	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	923, 991
Eco147I	AGGCCT	1 cut(s)	861
Eco47I	GGWCC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	6
EcoRI	GAATTC	2 cut(s)	103, 536
EcoRII	CCWGG	2 cut(s)	343, 374
EcoT14I	CCWWGG	2 cut(s)	923, 991
ErhI	CCWWGG	2 cut(s)	923, 991
FauI	CCCGC	2 cut(s)	342, 965
FbaI	TGATCA	1 cut(s)	670
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	3 cut(s)	123, 603, 739
FokI	GGATG	2 cut(s)	31, 940
Fsp4HI	GCNGC	3 cut(s)	123, 603, 739
FspBI	CTAG	1 cut(s)	725
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	3 cut(s)	123, 603, 739
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	5 cut(s)	68, 861, 872, 1049, 1080
HapII	CCGG	1 cut(s)	1100
HgaI	GACGC	1 cut(s)	403
HhaI	GCGC	1 cut(s)	655
Hin1I	GRCGYC	1 cut(s)	414
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HinfI	GANTC	9 cut(s)	52, 98, 139, 730, 830, 839, 894, 964, 1096
HpaI	GTTAAC	1 cut(s)	772
HpaII	CCGG	1 cut(s)	1100
Hpy166II	GTNNAC	2 cut(s)	61, 772
Hpy188I	TCNGA	6 cut(s)	109, 267, 316, 429, 535, 681
Hpy188III	TCNNGA	5 cut(s)	668, 725, 749, 1100, 1205
Hpy8I	GTNNAC	2 cut(s)	61, 772
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	6 cut(s)	39, 43, 47, 438, 674, 752
HpyCH4III	ACNGT	1 cut(s)	937
HpyCH4IV	ACGT	2 cut(s)	272, 553
HpyCH4V	TGCA	3 cut(s)	75, 605, 1061
HpyF10VI	GCNNNNNNNGC	3 cut(s)	401, 611, 620
HpyF3I	CTNAG	3 cut(s)	108, 264, 832
HpySE526I	ACGT	2 cut(s)	272, 553
Hsp92I	GRCGYC	1 cut(s)	414
HspAI	GCGC	1 cut(s)	653
Kpn2I	TCCGGA	1 cut(s)	1099
KpnI	GGTACC	1 cut(s)	334
Ksp22I	TGATCA	1 cut(s)	670
KspAI	GTTAAC	1 cut(s)	772
Kzo9I	GATC	8 cut(s)	78, 218, 670, 685, 697, 719, 1063, 1171
LmnI	GCTCC	5 cut(s)	361, 487, 650, 782, 1135
Lsp1109I	GCAGC	2 cut(s)	109, 589
LweI	GCATC	2 cut(s)	382, 517
MabI	ACCWGGT	1 cut(s)	343
MaeI	CTAG	1 cut(s)	725
MaeII	ACGT	2 cut(s)	272, 553
MaeIII	GTNAC	2 cut(s)	995, 1184
MalI	GATC	8 cut(s)	80, 220, 672, 687, 699, 721, 1065, 1173
MboI	GATC	8 cut(s)	78, 218, 670, 685, 697, 719, 1063, 1171
MboII	GAAGA	8 cut(s)	108, 278, 409, 412, 483, 959, 962, 1040
MflI	RGATCY	2 cut(s)	719, 1063
MlsI	TGGCCA	1 cut(s)	872
MluCI	AATT	9 cut(s)	103, 161, 189, 536, 570, 579, 642, 798, 854
MluNI	TGGCCA	1 cut(s)	872
MlyI	GAGTC	3 cut(s)	92, 824, 973
MmeI	TCCRAC	3 cut(s)	421, 775, 919
Mox20I	TGGCCA	1 cut(s)	872
MroI	TCCGGA	1 cut(s)	1099
MroXI	GAANNNNTTC	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	872
MseI	TTAA	5 cut(s)	515, 557, 771, 1125, 1219
MslI	CAYNNNNRTG	1 cut(s)	693
Msp20I	TGGCCA	1 cut(s)	872
MspI	CCGG	1 cut(s)	1100
MspR9I	CCNGG	2 cut(s)	345, 376
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	2 cut(s)	345, 376
MwoI	GCNNNNNNNGC	3 cut(s)	401, 611, 620
NcoI	CCATGG	1 cut(s)	991
NdeII	GATC	8 cut(s)	78, 218, 670, 685, 697, 719, 1063, 1171
NlaIV	GGNNCC	2 cut(s)	7, 332
NmeAIII	GCCGAG	1 cut(s)	1075
NspI	RCATGY	2 cut(s)	248, 440
PceI	AGGCCT	1 cut(s)	861
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PctI	GAATGC	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	448
PfeI	GAWTC	6 cut(s)	52, 139, 730, 839, 894, 1096
PflMI	CCANNNNNTGG	1 cut(s)	913
PkrI	GCNGC	3 cut(s)	124, 604, 740
PleI	GAGTC	3 cut(s)	92, 824, 972
PpsI	GAGTC	3 cut(s)	92, 824, 972
PpuMI	RGGWCCY	1 cut(s)	6
Psp5II	RGGWCCY	1 cut(s)	6
Psp6I	CCWGG	2 cut(s)	343, 374
PspGI	CCWGG	2 cut(s)	343, 374
PspN4I	GGNNCC	2 cut(s)	7, 332
PspPI	GGNCC	1 cut(s)	6
PspPPI	RGGWCCY	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	679
PsuI	RGATCY	2 cut(s)	719, 1063
RsaI	GTAC	3 cut(s)	332, 902, 1145
RsaNI	GTAC	3 cut(s)	331, 901, 1144
RseI	CAYNNNNRTG	1 cut(s)	693
SaqAI	TTAA	5 cut(s)	515, 557, 771, 1125, 1219
SatI	GCNGC	3 cut(s)	123, 603, 739
Sau3AI	GATC	8 cut(s)	78, 218, 670, 685, 697, 719, 1063, 1171
Sau96I	GGNCC	1 cut(s)	6
SchI	GAGTC	3 cut(s)	92, 824, 973
ScrFI	CCNGG	2 cut(s)	345, 376
SexAI	ACCWGGT	1 cut(s)	343
SfaNI	GCATC	2 cut(s)	382, 517
SinI	GGWCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	693
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
Sse9I	AATT	9 cut(s)	103, 161, 189, 536, 570, 579, 642, 798, 854
SseBI	AGGCCT	1 cut(s)	861
SsiI	CCGC	5 cut(s)	88, 335, 459, 739, 958
SspMI	CTAG	1 cut(s)	725
StuI	AGGCCT	1 cut(s)	861
StyD4I	CCNGG	2 cut(s)	343, 374
StyI	CCWWGG	2 cut(s)	923, 991
TaaI	ACNGT	1 cut(s)	937
TaiI	ACGT	2 cut(s)	275, 556
TaqI	TCGA	5 cut(s)	101, 275, 630, 700, 918
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	9 cut(s)	103, 161, 189, 536, 570, 579, 642, 798, 854
TatI	WGTACW	2 cut(s)	900, 1143
TauI	GCSGC	1 cut(s)	741
TfiI	GAWTC	6 cut(s)	52, 139, 730, 839, 894, 1096
Tru1I	TTAA	5 cut(s)	515, 557, 771, 1125, 1219
Tru9I	TTAA	5 cut(s)	515, 557, 771, 1125, 1219
TscAI	CASTG	3 cut(s)	310, 529, 1195
TseI	GCWGC	2 cut(s)	122, 602
TspDTI	ATGAA	9 cut(s)	5, 9, 13, 33, 389, 582, 635, 944, 991
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	3 cut(s)	310, 529, 1195
Van91I	CCANNNNNTGG	1 cut(s)	913
VpaK11BI	GGWCC	1 cut(s)	6
XapI	RAATTY	4 cut(s)	103, 536, 570, 642
XbaI	TCTAGA	1 cut(s)	724
XceI	RCATGY	2 cut(s)	248, 440
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	448
XspI	CTAG	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.