pycom17g08480

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001915
Physical Location & Seq
Reverse (-)
6343529 .. 6344354
826 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 744 bp
ATGAAGAACTGCGAGCTCTGCCGGCTTCCCGCGAGAATCGTCTGCGAATCGGACCAGGCGATGCTGTGCTGGGACTGCGACGCCAAGGTCCACGGCGCCAATTTTCTGGTGGCTCGCCACTCCAGGAGTCTCCTCTGCCACGGGTGCCAGTCTCCGACGCCGTGGAATGCCTGCGGCGAAAAGCTCGGCCACACTTTTTCGGTTTGCGAGAGCTGCGTTGTACGAGACGGAAGCAGAGACGAGGAGGAGGAGGTGAGCCAGGACGGTAATGATGATGAATTCGATTCCGACATCGATGAGATTGACGACGACGATGACGCCGATGATGATGAGGGTGTTGGTTTCGATGAGGGCGGAGATAAGCAGGTGGTGCCGTTGTCTTCGACGGCGACGCCGCCTCCGCCGACTTCGAGCGCATCGAGCAGCGAGCAGTCTGCGACTGCGTCCAACAATGGCGATGGAGATGGTTCCGAAGACGCCACCGCCGTGTCGTTGAAGCGATTCAGAGAAACCGCGTCTGATCTTCGCTCTCAGGTTGACGATCTCCACCGTTCATGTCCTCACCGGAGGTGTGGCTCGGCTAAGGCAGCTCGAGTGGGTCGGACCGAACCCGACGACGGAGCCACTTCGGTTGACTCATCGAGACCTCGAAAAGACCGGAGAATCGATCTTAACATGCCGGGTTCCCCGTCCTCGCCCGTTATCGAGTCCACGAGGAGATTTCGCCGGCAAGACAATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-B_box

Protein Analysis

248

Amino Acids

26.85

Weight (kDa)

4.61

Isoelectric Point (pI)

72.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 2 - 42 6.6e-06 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 355
AasI GACNNNNNNGTC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 355
AccB1I GGYRCC 3 cut(s) 95, 144, 370
AccII CGCG 2 cut(s) 32, 515
AciI CCGC 7 cut(s) 30, 174, 354, 395, 401, 483, 513
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 1 cut(s) 278
AcyI GRCGYC 6 cut(s) 81, 96, 158, 318, 392, 477
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 617
AgsI TTSAA 1 cut(s) 496
AjnI CCWGG 3 cut(s) 54, 122, 258
AleI CACNNNNGTG 1 cut(s) 485
AluBI AGCT 4 cut(s) 16, 184, 213, 590
AluI AGCT 4 cut(s) 16, 184, 213, 590
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 5 cut(s) 134, 156, 219, 231, 637
Ama87I CYCGRG 1 cut(s) 591
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 3 cut(s) 213, 423, 587
ApoI RAATTY 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 500
AspLEI GCGC 2 cut(s) 98, 416
AspS9I GGNCC 3 cut(s) 52, 88, 603
AsuC2I CCSGG 1 cut(s) 681
AsuHPI GGTGA 2 cut(s) 265, 554
AvaI CYCGRG 1 cut(s) 591
AvaII GGWCC 3 cut(s) 52, 88, 603
BanI GGYRCC 3 cut(s) 95, 144, 370
BanII GRGCYC 1 cut(s) 18
BauI CACGAG 1 cut(s) 712
BbsI GAAGAC 2 cut(s) 372, 480
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 3 cut(s) 200, 435, 599
BccI CCATC 2 cut(s) 452, 458
BceAI ACGGC 5 cut(s) 109, 145, 358, 402, 470
BcgI CGANNNNNNTGC 3 cut(s) 416, 450, 719
BciT130I CCWGG 3 cut(s) 56, 124, 260
BcnI CCSGG 1 cut(s) 681
BcoDI GTCTC 5 cut(s) 134, 156, 219, 231, 637
BfoI RGCGCY 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 355
BisI GCNGC 5 cut(s) 175, 214, 395, 424, 588
BlsI GCNGC 5 cut(s) 176, 215, 396, 425, 589
Bme1390I CCNGG 4 cut(s) 56, 124, 260, 681
Bme18I GGWCC 3 cut(s) 52, 88, 603
BmeT110I CYCGRG 1 cut(s) 591
BmgT120I GGNCC 3 cut(s) 52, 88, 603
BmiI GGNNCC 6 cut(s) 97, 146, 372, 469, 622, 685
BmrFI CCNGG 4 cut(s) 56, 124, 260, 681
BmsI GCATC 2 cut(s) 51, 425
BpiI GAAGAC 2 cut(s) 372, 480
BpmI CTGGAG 1 cut(s) 106
Bpu10I CCTNAGC 1 cut(s) 582
BpuMI CCSGG 1 cut(s) 681
Bsa29I ATCGAT 2 cut(s) 294, 666
BsaHI GRCGYC 6 cut(s) 81, 96, 158, 318, 392, 477
BsaI GGTCTC 1 cut(s) 637
BsaJI CCNNGG 4 cut(s) 84, 91, 139, 161
BsaWI WCCGGW 2 cut(s) 564, 657
BsaXI ACNNNNNCTCC 2 cut(s) 382, 412
Bsc4I CCNNNNNNNGG 1 cut(s) 617
Bse118I RCCGGY 2 cut(s) 21, 726
Bse1I ACTGG 1 cut(s) 148
BseBI CCWGG 3 cut(s) 56, 124, 260
BseCI ATCGAT 2 cut(s) 294, 666
BseDI CCNNGG 4 cut(s) 84, 91, 139, 161
BseLI CCNNNNNNNGG 1 cut(s) 617
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 5 cut(s) 122, 257, 260, 263, 730
BseXI GCAGC 3 cut(s) 200, 435, 599
BseYI CCCAGC 1 cut(s) 69
Bsh1236I CGCG 2 cut(s) 32, 515
BshFI GGCC 1 cut(s) 189
BshNI GGYRCC 3 cut(s) 95, 144, 370
BshVI ATCGAT 2 cut(s) 294, 666
BsiHKAI GWGCWC 1 cut(s) 18
BsiHKCI CYCGRG 1 cut(s) 591
BsiSI CCGG 5 cut(s) 22, 565, 658, 680, 727
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 617
BsmAI GTCTC 5 cut(s) 134, 156, 219, 231, 637
BsmBI CGTCTC 2 cut(s) 219, 231
BsmFI GGGAC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 1 cut(s) 189
Bso31I GGTCTC 1 cut(s) 637
BsoBI CYCGRG 1 cut(s) 591
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 3 cut(s) 520, 541, 667
BspACI CCGC 7 cut(s) 30, 174, 354, 395, 401, 483, 513
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 544
BspDI ATCGAT 2 cut(s) 294, 666
BspFNI CGCG 2 cut(s) 32, 515
BspLI GGNNCC 6 cut(s) 97, 146, 372, 469, 622, 685
BspMI ACCTGC 1 cut(s) 355
BspT107I GGYRCC 3 cut(s) 95, 144, 370
BspTNI GGTCTC 1 cut(s) 637
BsrFI RCCGGY 2 cut(s) 21, 726
BsrI ACTGG 1 cut(s) 148
BssAI RCCGGY 2 cut(s) 21, 726
BssECI CCNNGG 4 cut(s) 84, 91, 139, 161
BssMI GATC 3 cut(s) 520, 541, 667
BssNI GRCGYC 6 cut(s) 81, 96, 158, 318, 392, 477
BssSI CACGAG 1 cut(s) 712
BssT1I CCWWGG 1 cut(s) 84
Bst2BI CACGAG 1 cut(s) 712
Bst2UI CCWGG 3 cut(s) 56, 124, 260
Bst4CI ACNGT 2 cut(s) 266, 551
BstACI GRCGYC 6 cut(s) 81, 96, 158, 318, 392, 477
BstAPI GCANNNNNTGC 1 cut(s) 370
BstC8I GCNNGC 6 cut(s) 14, 23, 115, 172, 428, 728
BstDEI CTNAG 2 cut(s) 531, 582
BstDSI CCRYGG 3 cut(s) 91, 139, 161
BstFNI CGCG 2 cut(s) 32, 515
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 2 cut(s) 98, 416
BstKTI GATC 3 cut(s) 523, 544, 670
BstMAI GTCTC 5 cut(s) 134, 156, 219, 231, 637
BstMBI GATC 3 cut(s) 520, 541, 667
BstMWI GCNNNNNNNGC 9 cut(s) 18, 22, 75, 144, 213, 370, 400, 420, 587
BstNI CCWGG 3 cut(s) 56, 124, 260
BstNSI RCATGY 1 cut(s) 679
BstSCI CCNGG 4 cut(s) 54, 122, 258, 679
BstUI CGCG 2 cut(s) 32, 515
BstV1I GCAGC 3 cut(s) 200, 435, 599
BstV2I GAAGAC 2 cut(s) 372, 480
BstXI CCANNNNNNTGG 1 cut(s) 106
Bsu15I ATCGAT 2 cut(s) 294, 666
BsuRI GGCC 1 cut(s) 189
BsuTUI ATCGAT 2 cut(s) 294, 666
BtgI CCRYGG 3 cut(s) 91, 139, 161
BtgZI GCGATG 2 cut(s) 74, 471
BveI ACCTGC 1 cut(s) 355
Cac8I GCNNGC 6 cut(s) 14, 23, 115, 172, 428, 728
CfoI GCGC 2 cut(s) 98, 416
Cfr10I RCCGGY 2 cut(s) 21, 726
Cfr13I GGNCC 3 cut(s) 52, 88, 603
ClaI ATCGAT 2 cut(s) 294, 666
CpoI CGGWCCG 1 cut(s) 603
CseI GACGC 7 cut(s) 89, 166, 326, 400, 432, 485, 504
Csp6I GTAC 1 cut(s) 221
CspCI CAANNNNNGTGG 2 cut(s) 613, 648
CspI CGGWCCG 1 cut(s) 603
CviAII CATG 2 cut(s) 555, 676
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 2 cut(s) 531, 582
DinI GGCGCC 1 cut(s) 97
DpnI GATC 3 cut(s) 522, 543, 669
DpnII GATC 3 cut(s) 520, 541, 667
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
EaeI YGGCCR 1 cut(s) 187
EciI GGCGGA 2 cut(s) 369, 390
Ecl136II GAGCTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 637
Eco47I GGWCC 3 cut(s) 52, 88, 603
Eco53kI GAGCTC 1 cut(s) 16
Eco88I CYCGRG 1 cut(s) 591
EcoICRI GAGCTC 1 cut(s) 16
EcoRI GAATTC 1 cut(s) 278
EcoRII CCWGG 3 cut(s) 54, 122, 258
EcoT14I CCWWGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 18
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 84
Esp3I CGTCTC 2 cut(s) 219, 231
FaeI CATG 2 cut(s) 558, 679
FaiI YATR 2 cut(s) 556, 677
FaqI GGGAC 1 cut(s) 86
FatI CATG 2 cut(s) 554, 675
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 5 cut(s) 175, 214, 395, 424, 588
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 5 cut(s) 175, 214, 395, 424, 588
GlaI GCGC 2 cut(s) 97, 415
GluI GCNGC 5 cut(s) 175, 214, 395, 424, 588
GsaI CCCAGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 106
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 1 cut(s) 189
HapII CCGG 5 cut(s) 22, 565, 658, 680, 727
HgaI GACGC 7 cut(s) 89, 166, 326, 400, 432, 485, 504
HhaI GCGC 2 cut(s) 98, 416
Hin1I GRCGYC 6 cut(s) 81, 96, 158, 318, 392, 477
Hin1II CATG 2 cut(s) 558, 679
Hin6I GCGC 2 cut(s) 96, 414
HinP1I GCGC 2 cut(s) 96, 414
HincII GTYRAC 2 cut(s) 538, 634
HindII GTYRAC 2 cut(s) 538, 634
HinfI GANTC 8 cut(s) 36, 47, 127, 284, 501, 635, 663, 707
HpaII CCGG 5 cut(s) 22, 565, 658, 680, 727
HphI GGTGA 2 cut(s) 265, 554
Hpy166II GTNNAC 4 cut(s) 91, 538, 634, 711
Hpy188I TCNGA 7 cut(s) 52, 156, 289, 472, 506, 520, 603
Hpy188III TCNNGA 1 cut(s) 642
Hpy8I GTNNAC 4 cut(s) 91, 538, 634, 711
Hpy99I CGWCG 8 cut(s) 83, 160, 311, 314, 388, 394, 617, 620
HpyCH4III ACNGT 2 cut(s) 266, 551
HpyF10VI GCNNNNNNNGC 9 cut(s) 18, 22, 75, 144, 213, 370, 400, 420, 587
HpyF3I CTNAG 2 cut(s) 531, 582
Hsp92I GRCGYC 6 cut(s) 81, 96, 158, 318, 392, 477
Hsp92II CATG 2 cut(s) 558, 679
HspAI GCGC 2 cut(s) 96, 414
KasI GGCGCC 1 cut(s) 95
KroI GCCGGC 2 cut(s) 21, 726
KroNI GCCGGC 2 cut(s) 23, 728
Kzo9I GATC 3 cut(s) 520, 541, 667
LmnI GCTCC 1 cut(s) 620
Lsp1109I GCAGC 3 cut(s) 200, 435, 599
LweI GCATC 2 cut(s) 51, 425
MalI GATC 3 cut(s) 522, 543, 669
MboI GATC 3 cut(s) 520, 541, 667
MboII GAAGA 4 cut(s) 16, 372, 485, 515
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 2 cut(s) 100, 278
Mly113I GGCGCC 1 cut(s) 96
MlyI GAGTC 3 cut(s) 136, 629, 716
MmeI TCCRAC 4 cut(s) 179, 312, 471, 581
MroNI GCCGGC 2 cut(s) 21, 726
MroXI GAANNNNTTC 1 cut(s) 500
MseI TTAA 1 cut(s) 672
MslI CAYNNNNRTG 1 cut(s) 485
MspI CCGG 5 cut(s) 22, 565, 658, 680, 727
MspR9I CCNGG 4 cut(s) 56, 124, 260, 681
Mva1269I GAATGC 1 cut(s) 172
MvaI CCWGG 3 cut(s) 56, 124, 260
MvnI CGCG 2 cut(s) 32, 515
MwoI GCNNNNNNNGC 9 cut(s) 18, 22, 75, 144, 213, 370, 400, 420, 587
NaeI GCCGGC 2 cut(s) 23, 728
NarI GGCGCC 1 cut(s) 96
NciI CCSGG 1 cut(s) 681
NdeII GATC 3 cut(s) 520, 541, 667
NgoMIV GCCGGC 2 cut(s) 21, 726
NlaIII CATG 2 cut(s) 558, 679
NlaIV GGNNCC 6 cut(s) 97, 146, 372, 469, 622, 685
NmeAIII GCCGAG 2 cut(s) 165, 557
NspI RCATGY 1 cut(s) 679
OliI CACNNNNGTG 1 cut(s) 485
PaeR7I CTCGAG 1 cut(s) 591
PaqCI CACCTGC 1 cut(s) 355
PcsI WCGNNNNNNNCGW 4 cut(s) 56, 318, 416, 483
PctI GAATGC 1 cut(s) 172
PdiI GCCGGC 2 cut(s) 23, 728
PdmI GAANNNNTTC 1 cut(s) 500
PfeI GAWTC 5 cut(s) 36, 47, 284, 501, 663
PflFI GACNNNGTC 1 cut(s) 442
PfoI TCCNGGA 1 cut(s) 122
PkrI GCNGC 5 cut(s) 176, 215, 396, 425, 589
PleI GAGTC 3 cut(s) 135, 629, 715
PluTI GGCGCC 1 cut(s) 99
PpsI GAGTC 3 cut(s) 135, 629, 715
Psp124BI GAGCTC 1 cut(s) 18
Psp6I CCWGG 3 cut(s) 54, 122, 258
PspFI CCCAGC 1 cut(s) 69
PspGI CCWGG 3 cut(s) 54, 122, 258
PspN4I GGNNCC 6 cut(s) 97, 146, 372, 469, 622, 685
PspPI GGNCC 3 cut(s) 52, 88, 603
PspXI VCTCGAGB 1 cut(s) 591
PsyI GACNNNGTC 1 cut(s) 442
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
RseI CAYNNNNRTG 1 cut(s) 485
Rsr2I CGGWCCG 1 cut(s) 603
RsrII CGGWCCG 1 cut(s) 603
SacI GAGCTC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 5 cut(s) 175, 214, 395, 424, 588
Sau3AI GATC 3 cut(s) 520, 541, 667
Sau96I GGNCC 3 cut(s) 52, 88, 603
SchI GAGTC 3 cut(s) 136, 629, 716
ScrFI CCNGG 4 cut(s) 56, 124, 260, 681
SduI GDGCHC 1 cut(s) 18
SfaNI GCATC 2 cut(s) 51, 425
SfoI GGCGCC 1 cut(s) 97
Sfr274I CTCGAG 1 cut(s) 591
SinI GGWCC 3 cut(s) 52, 88, 603
SlaI CTCGAG 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 591
SmoI CTYRAG 1 cut(s) 591
Sse9I AATT 2 cut(s) 100, 278
SsiI CCGC 7 cut(s) 30, 174, 354, 395, 401, 483, 513
SspDI GGCGCC 1 cut(s) 95
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 4 cut(s) 54, 122, 258, 679
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 2 cut(s) 266, 551
TaqII GACCGA 1 cut(s) 620
TasI AATT 2 cut(s) 100, 278
TauI GCSGC 2 cut(s) 177, 397
TfiI GAWTC 5 cut(s) 36, 47, 284, 501, 663
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TseI GCWGC 3 cut(s) 213, 423, 587
TspDTI ATGAA 3 cut(s) 17, 291, 543
TspGWI ACGGA 2 cut(s) 243, 633
Tth111I GACNNNGTC 1 cut(s) 442
VpaK11BI GGWCC 3 cut(s) 52, 88, 603
XapI RAATTY 1 cut(s) 278
XceI RCATGY 1 cut(s) 679
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
XhoI CTCGAG 1 cut(s) 591
XmnI GAANNNNTTC 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.