Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012527_4311101_to_5153684

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Forward (+)

130166 .. 130903

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTCGAGCGTGGAGGAGCCACTTGGTTGTGACAAGTTGCCTAGCATGAGTACCATGGACCGGATTCAGAGGTTCTCATCCACTGCGTGCAGGTCTAGTTCAGATGATGCAGCGCTGGGGAACTGTTGGATCGAAGGAAGAAGTTGTAGCACATCGAATAGCTACAATGAAGATTATGATGAATATACAAGGGAGGCCTTTCCATGGAAAAGACATACAAGAGACCAGGGCTTGTCCCATGGTGACTCATTCAATCAACGGACGTTAAGCGTACGCAGGAATCACAGGGTATTTGGAAATATTTGTGATTCATGGTATTTCTCGGATCAATATAACCCCAAGTGCAATAACACAGATATGGCAAATAAGGTGCTTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

127

Amino Acids

14.54

Weight (kDa)

6.27

Isoelectric Point (pI)

68.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	81
AclWI	GGATC	2 cut(s)	137, 333
AdeI	CACNNNGTG	1 cut(s)	87
AfaI	GTAC	2 cut(s)	52, 273
AfeI	AGCGCT	1 cut(s)	114
AfiI	CCNNNNNNNGG	2 cut(s)	60, 204
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	2 cut(s)	137, 333
Aor51HI	AGCGCT	1 cut(s)	114
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	2 cut(s)	42, 96
BfoI	RGCGCY	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	81
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	97
BsaI	GGTCTC	1 cut(s)	216
BsaJI	CCNNGG	4 cut(s)	54, 203, 226, 238
BsaWI	WCCGGW	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 204
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	4 cut(s)	54, 203, 226, 238
BseGI	GGATG	1 cut(s)	77
BseLI	CCNNNNNNNGG	2 cut(s)	60, 204
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	122
BseYI	CCCAGC	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	61
BsiWI	CGTACG	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	2 cut(s)	60, 204
BsmAI	GTCTC	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	197
Bso31I	GGTCTC	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	129, 325
Bsp19I	CCATGG	3 cut(s)	54, 203, 238
BspANI	GGCC	1 cut(s)	197
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	81
BspPI	GGATC	2 cut(s)	137, 333
BspTNI	GGTCTC	1 cut(s)	216
BssECI	CCNNGG	4 cut(s)	54, 203, 226, 238
BssMI	GATC	2 cut(s)	129, 325
BssT1I	CCWWGG	3 cut(s)	54, 203, 238
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	88
BstDSI	CCRYGG	3 cut(s)	54, 203, 238
BstF5I	GGATG	1 cut(s)	77
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	2 cut(s)	132, 328
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	2 cut(s)	129, 325
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	197
BtgI	CCRYGG	3 cut(s)	54, 203, 238
BtsCI	GGATG	1 cut(s)	77
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
BveI	ACCTGC	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	88
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	58
Csp6I	GTAC	2 cut(s)	51, 272
CviAII	CATG	5 cut(s)	46, 55, 204, 239, 312
CviJI	RGCY	4 cut(s)	19, 162, 197, 231
CviKI_1	RGCY	4 cut(s)	19, 162, 197, 231
CviQI	GTAC	2 cut(s)	51, 272
DpnI	GATC	2 cut(s)	131, 327
DpnII	GATC	2 cut(s)	129, 325
DraIII	CACNNNGTG	1 cut(s)	87
Eco130I	CCWWGG	3 cut(s)	54, 203, 238
Eco147I	AGGCCT	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	58
Eco47III	AGCGCT	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	3 cut(s)	54, 203, 238
ErhI	CCWWGG	3 cut(s)	54, 203, 238
FaeI	CATG	5 cut(s)	49, 58, 207, 242, 315
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	5 cut(s)	45, 54, 203, 238, 311
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	2 cut(s)	42, 96
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	111
GsaI	CCCAGC	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	1 cut(s)	61
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	5 cut(s)	49, 58, 207, 242, 315
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	4 cut(s)	64, 245, 280, 308
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	1 cut(s)	254
Hpy188I	TCNGA	3 cut(s)	69, 103, 325
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	3 cut(s)	90, 110, 345
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	5 cut(s)	49, 58, 207, 242, 315
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	2 cut(s)	129, 325
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	7 cut(s)	74, 76, 101, 212, 239, 262, 271
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	2 cut(s)	42, 96
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	29, 242
MalI	GATC	2 cut(s)	131, 327
MboI	GATC	2 cut(s)	129, 325
MboII	GAAGA	2 cut(s)	150, 182
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	3 cut(s)	7, 63, 187
MseI	TTAA	1 cut(s)	266
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
NcoI	CCATGG	3 cut(s)	54, 203, 238
NdeII	GATC	2 cut(s)	129, 325
NlaIII	CATG	5 cut(s)	49, 58, 207, 242, 315
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	2 cut(s)	29, 242
PceI	AGGCCT	1 cut(s)	197
PfeI	GAWTC	3 cut(s)	64, 280, 308
Pfl23II	CGTACG	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	225
PspLI	CGTACG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	58
RsaI	GTAC	2 cut(s)	52, 273
RsaNI	GTAC	2 cut(s)	51, 272
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	129, 325
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	227
SetI	ASST	5 cut(s)	74, 95, 164, 266, 372
SfaNI	GCATC	1 cut(s)	97
SinI	GGWCC	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	356
SseBI	AGGCCT	1 cut(s)	197
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	2 cut(s)	42, 96
StuI	AGGCCT	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	3 cut(s)	54, 203, 238
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	4 cut(s)	5, 132, 155, 376
TfiI	GAWTC	3 cut(s)	64, 280, 308
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	2 cut(s)	29, 242
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	2 cut(s)	29, 242
TspDTI	ATGAA	3 cut(s)	183, 195, 300
TspGWI	ACGGA	1 cut(s)	274
TspRI	CASTG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	58
XspI	CTAG	2 cut(s)	42, 96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.