RchiOBHm_Chr6g0252921

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001867
Physical Location & Seq
Forward (+)
8155939 .. 8157435
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 969 bp
ATGAAATTAGCAATGGCTCGTTCAATTTCTCATTTCAAGAACACTGCCTCCCTTTTTCTTCTTGCATTGAATCTCAGCCTCACTATTCACCAGGTCCTGGGTGCCACTGATAACAGTACTCTCAAGTACTGCGGGCCCATTACAGCCACTGATACTGATCGAGTCCAATTTGCTTTGAACTTGGAGTTCTTGGAGACTGAGTTTTTTCTGTACGGTGCTCTTGGCAAAGGCCTCGACAGCATTAATCCTGCTTATAGCCAAGGCGGTCCTCCTCCTATTGGTGGTCAGAAGGCCCTTCTTGAAGACCCTGTTGTCGCTCGTATCATTGAGGAATTTGCTTATGAAGAAGTTGGCCATATCAGAGCGATTACTAGCACAGTAGGAGGATTTCCAAGGCCTCTCTTAAATATCAGCCGTGGGCTATTTGCAAGAAGTTTCAACGATGTAGTGGGTTACCCCCTCATTCCTCCATTTGAACCCTATGCAAACTCTCTCAATTTTCTGCTAGCAGCCTATATCATCCCGTATGTGGGACTAAATGGCTATGTCAGCACCCTTCCAAGCCTTAACAGCACTATTTCTCGCAGCTTGGTTGCAAAACTCTTGGCAATTGAAAGTGGACAAGATGCAGTGATACGTACGTTACTGTATGAGAGAGCAAACGAGAGGGTGGTTCCGTACAAATTCACGGTGGCTGAATTAACCAACCTTATCTCTGCAAGACGGAACTCCCTCGGTGGGTGTGGCAACAAAGATGAAGGCATTATACTGCCTAACAAGACGCTCGGGGCAGAAAATCAGACAACCAGCAATGTTCTATCCGCTGATGCAAATTCTCTTGCCTACGCGAGAACCCCGGCTGAGATCTTGAGGATTGTCTATGGAAGTTTCAATGAATCTGTGCCTGGCGGGTTTTTCCCTAAAGGAGCTAATGGTGTTATTGCAAAGAGCTACCTTACCAGGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

322

Amino Acids

34.76

Weight (kDa)

7.71

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 50 - 218 4.8e-31 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 97
AccII CGCG 1 cut(s) 848
AciI CCGC 4 cut(s) 132, 264, 822, 909
AcoI YGGCCR 1 cut(s) 352
AcsI RAATTY 3 cut(s) 332, 683, 832
AfaI GTAC 5 cut(s) 118, 128, 212, 640, 680
AfiI CCNNNNNNNGG 6 cut(s) 97, 278, 281, 529, 530, 738
AgsI TTSAA 9 cut(s) 24, 37, 70, 178, 302, 439, 476, 614, 892
AjnI CCWGG 4 cut(s) 90, 96, 904, 959
AloI GAACNNNNNNTCC 2 cut(s) 32, 64
AluBI AGCT 3 cut(s) 588, 929, 951
AluI AGCT 3 cut(s) 588, 929, 951
Alw21I GWGCWC 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 188
AlwNI CAGNNNCTG 2 cut(s) 97, 149
Ama87I CYCGRG 1 cut(s) 785
AoxI GGCC 5 cut(s) 134, 229, 291, 352, 395
ApaI GGGCCC 1 cut(s) 138
ApeKI GCWGC 2 cut(s) 509, 585
ApoI RAATTY 3 cut(s) 332, 683, 832
AseI ATTAAT 1 cut(s) 243
AspS9I GGNCC 5 cut(s) 94, 134, 135, 266, 292
AsuC2I CCSGG 1 cut(s) 857
AsuHPI GGTGA 1 cut(s) 80
AsuNHI GCTAGC 1 cut(s) 505
AvaI CYCGRG 1 cut(s) 785
AvaII GGWCC 2 cut(s) 94, 266
BaeGI GKGCMC 1 cut(s) 138
BaeI ACNNNNGTAYC 2 cut(s) 626, 659
BalI TGGCCA 1 cut(s) 354
BanI GGYRCC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 138
BarI GAAGNNNNNNTAC 2 cut(s) 750, 782
BbsI GAAGAC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 2 cut(s) 521, 597
BceAI ACGGC 1 cut(s) 399
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BciT130I CCWGG 4 cut(s) 92, 98, 906, 961
BcnI CCSGG 1 cut(s) 857
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 2 cut(s) 372, 506
BglII AGATCT 1 cut(s) 864
BisI GCNGC 2 cut(s) 510, 586
BlsI GCNGC 2 cut(s) 511, 587
BmcAI AGTACT 2 cut(s) 118, 128
Bme1390I CCNGG 5 cut(s) 92, 98, 857, 906, 961
Bme18I GGWCC 2 cut(s) 94, 266
BmeT110I CYCGRG 1 cut(s) 785
BmgT120I GGNCC 5 cut(s) 94, 134, 135, 266, 292
BmiI GGNNCC 3 cut(s) 103, 136, 675
BmrFI CCNGG 5 cut(s) 92, 98, 857, 906, 961
BmsI GCATC 2 cut(s) 616, 817
BmtI GCTAGC 1 cut(s) 509
BpiI GAAGAC 1 cut(s) 309
BpuEI CTTGAG 2 cut(s) 107, 889
BpuMI CCSGG 1 cut(s) 857
BsaAI YACGTR 1 cut(s) 638
BsaBI GATNNNNATC 1 cut(s) 156
BsaJI CCNNGG 6 cut(s) 97, 259, 392, 415, 733, 855
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 185, 215
Bsc4I CCNNNNNNNGG 6 cut(s) 97, 278, 281, 529, 530, 738
Bse3DI GCAATG 2 cut(s) 18, 817
Bse8I GATNNNNATC 1 cut(s) 156
BseBI CCWGG 4 cut(s) 92, 98, 906, 961
BseDI CCNNGG 6 cut(s) 97, 259, 392, 415, 733, 855
BseGI GGATG 1 cut(s) 519
BseJI GATNNNNATC 1 cut(s) 156
BseLI CCNNNNNNNGG 6 cut(s) 97, 278, 281, 529, 530, 738
BseMI GCAATG 2 cut(s) 18, 817
BseMII CTCAG 3 cut(s) 88, 189, 852
BseRI GAGGAG 1 cut(s) 261
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 2 cut(s) 521, 597
Bsh1236I CGCG 1 cut(s) 848
BshFI GGCC 5 cut(s) 136, 231, 293, 354, 397
BshNI GGYRCC 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 220
BsiHKCI CYCGRG 1 cut(s) 785
BsiSI CCGG 1 cut(s) 857
BsiWI CGTACG 1 cut(s) 638
BslFI GGGAC 1 cut(s) 546
BslI CCNNNNNNNGG 6 cut(s) 97, 278, 281, 529, 530, 738
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 546
BsnI GGCC 5 cut(s) 136, 231, 293, 354, 397
BsoBI CYCGRG 1 cut(s) 785
Bsp120I GGGCCC 1 cut(s) 134
Bsp1286I GDGCHC 2 cut(s) 138, 220
Bsp143I GATC 3 cut(s) 157, 864, 963
BspACI CCGC 4 cut(s) 132, 264, 822, 909
BspANI GGCC 5 cut(s) 136, 231, 293, 354, 397
BspCNI CTCAG 3 cut(s) 87, 190, 853
BspFNI CGCG 1 cut(s) 848
BspLI GGNNCC 3 cut(s) 103, 136, 675
BspOI GCTAGC 1 cut(s) 509
BspT107I GGYRCC 1 cut(s) 101
BsrDI GCAATG 2 cut(s) 18, 817
BssECI CCNNGG 6 cut(s) 97, 259, 392, 415, 733, 855
BssMI GATC 3 cut(s) 157, 864, 963
BssT1I CCWWGG 2 cut(s) 259, 392
Bst2UI CCWGG 4 cut(s) 92, 98, 906, 961
Bst4CI ACNGT 5 cut(s) 116, 215, 379, 648, 691
BstBAI YACGTR 1 cut(s) 638
BstC8I GCNNGC 2 cut(s) 134, 507
BstDEI CTNAG 3 cut(s) 74, 198, 861
BstDSI CCRYGG 1 cut(s) 415
BstEII GGTNACC 1 cut(s) 452
BstF5I GGATG 1 cut(s) 519
BstFNI CGCG 1 cut(s) 848
BstKTI GATC 3 cut(s) 160, 867, 966
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 3 cut(s) 157, 864, 963
BstMWI GCNNNNNNNGC 3 cut(s) 237, 549, 570
BstNI CCWGG 4 cut(s) 92, 98, 906, 961
BstPI GGTNACC 1 cut(s) 452
BstSCI CCNGG 5 cut(s) 90, 96, 855, 904, 959
BstSLI GKGCMC 1 cut(s) 138
BstSNI TACGTA 1 cut(s) 638
BstUI CGCG 1 cut(s) 848
BstV1I GCAGC 2 cut(s) 521, 597
BstV2I GAAGAC 1 cut(s) 309
BstX2I RGATCY 2 cut(s) 864, 963
BstYI RGATCY 2 cut(s) 864, 963
BsuRI GGCC 5 cut(s) 136, 231, 293, 354, 397
BtgI CCRYGG 1 cut(s) 415
BtsCI GGATG 1 cut(s) 519
BtsI GCAGTG 2 cut(s) 42, 636
BtsIMutI CAGTG 4 cut(s) 42, 105, 147, 636
Cac8I GCNNGC 2 cut(s) 134, 507
CaiI CAGNNNCTG 2 cut(s) 97, 149
Cfr13I GGNCC 5 cut(s) 94, 134, 135, 266, 292
CseI GACGC 1 cut(s) 790
CsiI ACCWGGT 1 cut(s) 90
Csp6I GTAC 5 cut(s) 117, 127, 211, 639, 679
CviQI GTAC 5 cut(s) 117, 127, 211, 639, 679
DdeI CTNAG 3 cut(s) 74, 198, 861
DpnI GATC 3 cut(s) 159, 866, 965
DpnII GATC 3 cut(s) 157, 864, 963
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
EaeI YGGCCR 1 cut(s) 352
Eco105I TACGTA 1 cut(s) 638
Eco130I CCWWGG 2 cut(s) 259, 392
Eco147I AGGCCT 2 cut(s) 231, 397
Eco24I GRGCYC 1 cut(s) 138
Eco47I GGWCC 2 cut(s) 94, 266
Eco88I CYCGRG 1 cut(s) 785
Eco91I GGTNACC 1 cut(s) 452
EcoO109I RGGNCCY 2 cut(s) 94, 292
EcoO65I GGTNACC 1 cut(s) 452
EcoRII CCWGG 4 cut(s) 90, 96, 904, 959
EcoT14I CCWWGG 2 cut(s) 259, 392
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 2 cut(s) 259, 392
FaqI GGGAC 1 cut(s) 546
FauI CCCGC 2 cut(s) 125, 902
Fnu4HI GCNGC 2 cut(s) 510, 586
FokI GGATG 1 cut(s) 506
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 2 cut(s) 510, 586
FspBI CTAG 2 cut(s) 372, 506
GluI GCNGC 2 cut(s) 510, 586
HaeIII GGCC 5 cut(s) 136, 231, 293, 354, 397
HapII CCGG 1 cut(s) 857
HgaI GACGC 1 cut(s) 790
HinfI GANTC 3 cut(s) 70, 162, 896
HpaII CCGG 1 cut(s) 857
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 620
Hpy188I TCNGA 3 cut(s) 288, 362, 801
Hpy188III TCNNGA 3 cut(s) 37, 299, 868
Hpy8I GTNNAC 1 cut(s) 620
HpyAV CCTTC 4 cut(s) 283, 305, 566, 752
HpyCH4III ACNGT 5 cut(s) 116, 215, 379, 648, 691
HpyCH4IV ACGT 2 cut(s) 637, 641
HpyCH4V TGCA 8 cut(s) 65, 428, 485, 596, 629, 719, 830, 944
HpyF10VI GCNNNNNNNGC 3 cut(s) 237, 549, 570
HpyF3I CTNAG 3 cut(s) 74, 198, 861
HpySE526I ACGT 2 cut(s) 637, 641
Kzo9I GATC 3 cut(s) 157, 864, 963
LmnI GCTCC 1 cut(s) 926
Lsp1109I GCAGC 2 cut(s) 521, 597
LweI GCATC 2 cut(s) 616, 817
MabI ACCWGGT 1 cut(s) 90
MaeI CTAG 2 cut(s) 372, 506
MaeII ACGT 2 cut(s) 637, 641
MaeIII GTNAC 2 cut(s) 452, 642
MalI GATC 3 cut(s) 159, 866, 965
MboI GATC 3 cut(s) 157, 864, 963
MboII GAAGA 3 cut(s) 50, 314, 356
MfeI CAATTG 1 cut(s) 609
MflI RGATCY 2 cut(s) 864, 963
MhlI GDGCHC 2 cut(s) 138, 220
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 9 cut(s) 5, 24, 167, 332, 496, 609, 683, 698, 832
MluNI TGGCCA 1 cut(s) 354
MlyI GAGTC 1 cut(s) 171
Mox20I TGGCCA 1 cut(s) 354
MscI TGGCCA 1 cut(s) 354
MseI TTAA 4 cut(s) 243, 404, 567, 701
Msp20I TGGCCA 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 824
MspI CCGG 1 cut(s) 857
MspR9I CCNGG 5 cut(s) 92, 98, 857, 906, 961
MunI CAATTG 1 cut(s) 609
MvaI CCWGG 4 cut(s) 92, 98, 906, 961
MvnI CGCG 1 cut(s) 848
MwoI GCNNNNNNNGC 3 cut(s) 237, 549, 570
NciI CCSGG 1 cut(s) 857
NdeII GATC 3 cut(s) 157, 864, 963
NheI GCTAGC 1 cut(s) 505
NlaIV GGNNCC 3 cut(s) 103, 136, 675
PceI AGGCCT 2 cut(s) 231, 397
PfeI GAWTC 2 cut(s) 70, 896
Pfl23II CGTACG 1 cut(s) 638
PflMI CCANNNNNTGG 1 cut(s) 97
PkrI GCNGC 2 cut(s) 511, 587
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Ppu21I YACGTR 1 cut(s) 638
PpuMI RGGWCCY 1 cut(s) 94
PshBI ATTAAT 1 cut(s) 243
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 4 cut(s) 90, 96, 904, 959
PspEI GGTNACC 1 cut(s) 452
PspGI CCWGG 4 cut(s) 90, 96, 904, 959
PspLI CGTACG 1 cut(s) 638
PspN4I GGNNCC 3 cut(s) 103, 136, 675
PspOMI GGGCCC 1 cut(s) 134
PspPI GGNCC 5 cut(s) 94, 134, 135, 266, 292
PspPPI RGGWCCY 1 cut(s) 94
PstNI CAGNNNCTG 2 cut(s) 97, 149
PsuI RGATCY 2 cut(s) 864, 963
RsaI GTAC 5 cut(s) 118, 128, 212, 640, 680
RsaNI GTAC 5 cut(s) 117, 127, 211, 639, 679
SaqAI TTAA 4 cut(s) 243, 404, 567, 701
SatI GCNGC 2 cut(s) 510, 586
Sau3AI GATC 3 cut(s) 157, 864, 963
Sau96I GGNCC 5 cut(s) 94, 134, 135, 266, 292
ScaI AGTACT 2 cut(s) 118, 128
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 5 cut(s) 92, 98, 857, 906, 961
SduI GDGCHC 2 cut(s) 138, 220
SetI ASST 8 cut(s) 96, 590, 640, 644, 711, 931, 953, 957
SexAI ACCWGGT 1 cut(s) 90
SfaNI GCATC 2 cut(s) 616, 817
SinI GGWCC 2 cut(s) 94, 266
SmlI CTYRAG 2 cut(s) 122, 868
SmoI CTYRAG 2 cut(s) 122, 868
SnaBI TACGTA 1 cut(s) 638
Sse9I AATT 9 cut(s) 5, 24, 167, 332, 496, 609, 683, 698, 832
SseBI AGGCCT 2 cut(s) 231, 397
SsiI CCGC 4 cut(s) 132, 264, 822, 909
SspMI CTAG 2 cut(s) 372, 506
StuI AGGCCT 2 cut(s) 231, 397
StyD4I CCNGG 5 cut(s) 90, 96, 855, 904, 959
StyI CCWWGG 2 cut(s) 259, 392
TaaI ACNGT 5 cut(s) 116, 215, 379, 648, 691
TaiI ACGT 2 cut(s) 640, 644
TaqI TCGA 2 cut(s) 160, 234
TasI AATT 9 cut(s) 5, 24, 167, 332, 496, 609, 683, 698, 832
TatI WGTACW 2 cut(s) 116, 126
TfiI GAWTC 2 cut(s) 70, 896
Tru1I TTAA 4 cut(s) 243, 404, 567, 701
Tru9I TTAA 4 cut(s) 243, 404, 567, 701
TscAI CASTG 4 cut(s) 49, 112, 154, 636
TseI GCWGC 2 cut(s) 509, 585
TspDTI ATGAA 4 cut(s) 17, 357, 771, 909
TspGWI ACGGA 2 cut(s) 666, 739
TspRI CASTG 4 cut(s) 49, 112, 154, 636
Van91I CCANNNNNTGG 1 cut(s) 97
VpaK11BI GGWCC 2 cut(s) 94, 266
VspI ATTAAT 1 cut(s) 243
XapI RAATTY 3 cut(s) 332, 683, 832
XspI CTAG 2 cut(s) 372, 506
ZrmI AGTACT 2 cut(s) 118, 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.