Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Reverse (-)

8299010 .. 8300321

Gene Structure 1312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGTCTTGTGCCTGTGCTTGGAAAGCTGAGGAATAACTTAATTGCGGTTAATAGAAGATCAATAGCAGACAACGTTATTAAAGCCTCAAACAATCTTAATTCTGGGCACCAAGAACACAAGCCCTGGTTGCACCCTGACCCTTGCATTCGAAGCCTCCTGCGGAAATTCTCATTACCCACCTGTAAAGAATTGTGGACTGACTGGACTCCCAACAAACAATTCACCTATGGTCAATTGTGGACTCAGCTGCTGTCTCCTCTTGTAACGTTTGACCCACCCGAATCAACCCATCGGAGACTGATGGATGATGATCCCCAGATTACAGCTACTGCTGCTTTTGCGGTGGCAGAATTCAACAAGCAAAAGAATGCCCAGCTGCGATTCATTAGAGCAGTAAAGGGATTTCGCAGTTGTTTTGATTACTTTCTAACTATGGAGGCAGTCGATGCTCATGCGGTTAGAACTTACCAAGCACTAGTCAAAGAAAAGCGCATGCATCCCTATGAACCCTTTAAGGTCCATGAACCCTTTAAGGTCCTACTATTTGGTCTTGTTGCTGATAACGGCAATGGGAATTTGTTAAATCTAATTGATAACAGAAGGAATGGACTGTATGGTGAATGTCTATATGATGATCGAGGTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

216

Amino Acids

24.83

Weight (kDa)

9.19

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	104 - 168	3e-10	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	108
AciI	CCGC	4 cut(s)	47, 163, 344, 458
AclI	AACGTT	2 cut(s)	75, 269
AclWI	GGATC	1 cut(s)	308
AcsI	RAATTY	3 cut(s)	167, 353, 577
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	358
AhlI	ACTAGT	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	125
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	4 cut(s)	28, 250, 329, 379
AluI	AGCT	4 cut(s)	28, 250, 329, 379
Alw26I	GTCTC	2 cut(s)	261, 292
AlwI	GGATC	1 cut(s)	308
AlwNI	CAGNNNCTG	2 cut(s)	253, 332
ApeKI	GCWGC	3 cut(s)	250, 335, 379
ApoI	RAATTY	3 cut(s)	167, 353, 577
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	2 cut(s)	520, 538
AsuHPI	GGTGA	2 cut(s)	217, 632
AsuII	TTCGAA	1 cut(s)	151
AvaII	GGWCC	2 cut(s)	520, 538
BaeGI	GKGCMC	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	108
BbvCI	CCTCAGC	1 cut(s)	29
BbvI	GCAGC	3 cut(s)	237, 322, 366
BccI	CCATC	2 cut(s)	298, 300
BceAI	ACGGC	1 cut(s)	583
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	261, 292
BcuI	ACTAGT	1 cut(s)	478
BfaI	CTAG	1 cut(s)	479
BisI	GCNGC	3 cut(s)	251, 336, 380
BlsI	GCNGC	3 cut(s)	252, 337, 381
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	2 cut(s)	520, 538
BmgT120I	GGNCC	2 cut(s)	520, 538
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	127
BmsI	GCATC	2 cut(s)	439, 508
Bpu10I	CCTNAGC	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	577
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	125
BseGI	GGATG	2 cut(s)	313, 499
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMI	GCAATG	1 cut(s)	577
BseMII	CTCAG	2 cut(s)	20, 260
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	111
BseXI	GCAGC	3 cut(s)	237, 322, 366
BseYI	CCCAGC	1 cut(s)	375
BshNI	GGYRCC	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	2 cut(s)	261, 292
BsmI	GAATGC	2 cut(s)	147, 376
Bsp119I	TTCGAA	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	59, 313, 637
BspACI	CCGC	4 cut(s)	47, 163, 344, 458
BspCNI	CTCAG	2 cut(s)	21, 259
BspLI	GGNNCC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	308
BspT104I	TTCGAA	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	577
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	125
BssMI	GATC	3 cut(s)	59, 313, 637
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	615
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstBI	TTCGAA	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	497
BstDEI	CTNAG	2 cut(s)	29, 246
BstF5I	GGATG	2 cut(s)	313, 499
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	3 cut(s)	62, 316, 640
BstMAI	GTCTC	2 cut(s)	261, 292
BstMBI	GATC	3 cut(s)	59, 313, 637
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 130, 153, 335, 341, 449
BstNI	CCWGG	1 cut(s)	127
BstNSI	RCATGY	1 cut(s)	499
BstSCI	CCNGG	1 cut(s)	125
BstSLI	GKGCMC	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	237, 322, 366
BtsCI	GGATG	2 cut(s)	313, 499
Cac8I	GCNNGC	1 cut(s)	497
CaiI	CAGNNNCTG	2 cut(s)	253, 332
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	2 cut(s)	520, 538
CviAII	CATG	3 cut(s)	455, 496, 524
CviJI	RGCY	7 cut(s)	28, 86, 124, 156, 250, 329, 379
CviKI_1	RGCY	7 cut(s)	28, 86, 124, 156, 250, 329, 379
DdeI	CTNAG	2 cut(s)	29, 246
DpnI	GATC	3 cut(s)	61, 315, 639
DpnII	GATC	3 cut(s)	59, 313, 637
Eco47I	GGWCC	2 cut(s)	520, 538
EcoO109I	RGGNCCY	1 cut(s)	538
EcoRI	GAATTC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	125
EcoT22I	ATGCAT	1 cut(s)	501
FaeI	CATG	3 cut(s)	458, 499, 527
FaiI	YATR	9 cut(s)	231, 437, 456, 497, 507, 525, 618, 631, 633
FatI	CATG	3 cut(s)	454, 495, 523
Fnu4HI	GCNGC	3 cut(s)	251, 336, 380
FokI	GGATG	2 cut(s)	320, 486
Fsp4HI	GCNGC	3 cut(s)	251, 336, 380
FspBI	CTAG	1 cut(s)	479
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	3 cut(s)	251, 336, 380
GsaI	CCCAGC	1 cut(s)	379
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	3 cut(s)	458, 499, 527
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HinfI	GANTC	4 cut(s)	208, 244, 284, 384
HphI	GGTGA	2 cut(s)	217, 632
Hpy166II	GTNNAC	2 cut(s)	198, 243
Hpy188I	TCNGA	1 cut(s)	297
Hpy8I	GTNNAC	2 cut(s)	198, 243
HpyAV	CCTTC	1 cut(s)	597
HpyCH4III	ACNGT	1 cut(s)	615
HpyCH4IV	ACGT	2 cut(s)	75, 269
HpyCH4V	TGCA	3 cut(s)	133, 147, 499
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 130, 153, 335, 341, 449
HpyF3I	CTNAG	2 cut(s)	29, 246
HpySE526I	ACGT	2 cut(s)	75, 269
Hsp92II	CATG	3 cut(s)	458, 499, 527
HspAI	GCGC	1 cut(s)	493
Kzo9I	GATC	3 cut(s)	59, 313, 637
Lsp1109I	GCAGC	3 cut(s)	237, 322, 366
LweI	GCATC	2 cut(s)	439, 508
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	2 cut(s)	75, 269
MaeIII	GTNAC	2 cut(s)	265, 644
MalI	GATC	3 cut(s)	61, 315, 639
MboI	GATC	3 cut(s)	59, 313, 637
MboII	GAAGA	1 cut(s)	69
MfeI	CAATTG	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	9 cut(s)	42, 100, 167, 191, 221, 236, 353, 577, 591
MlyI	GAGTC	2 cut(s)	202, 238
MnlI	CCTC	6 cut(s)	24, 97, 167, 270, 433, 635
Mph1103I	ATGCAT	1 cut(s)	501
MseI	TTAA	7 cut(s)	41, 51, 81, 99, 516, 534, 584
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	2 cut(s)	250, 379
MspR9I	CCNGG	1 cut(s)	127
MunI	CAATTG	1 cut(s)	236
Mva1269I	GAATGC	2 cut(s)	147, 376
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	6 cut(s)	25, 130, 153, 335, 341, 449
NdeII	GATC	3 cut(s)	59, 313, 637
NlaIII	CATG	3 cut(s)	458, 499, 527
NlaIV	GGNNCC	1 cut(s)	110
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	1 cut(s)	499
NspV	TTCGAA	1 cut(s)	151
PaeI	GCATGC	1 cut(s)	499
PctI	GAATGC	2 cut(s)	147, 376
PfeI	GAWTC	2 cut(s)	284, 384
PkrI	GCNGC	3 cut(s)	252, 337, 381
PleI	GAGTC	2 cut(s)	202, 238
PpsI	GAGTC	2 cut(s)	202, 238
PpuMI	RGGWCCY	1 cut(s)	538
Psp1406I	AACGTT	2 cut(s)	75, 269
Psp5II	RGGWCCY	1 cut(s)	538
Psp6I	CCWGG	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	110
PspPI	GGNCC	2 cut(s)	520, 538
PspPPI	RGGWCCY	1 cut(s)	538
PstNI	CAGNNNCTG	2 cut(s)	253, 332
PvuII	CAGCTG	2 cut(s)	250, 379
RseI	CAYNNNNRTG	1 cut(s)	504
SaqAI	TTAA	7 cut(s)	41, 51, 81, 99, 516, 534, 584
SatI	GCNGC	3 cut(s)	251, 336, 380
Sau3AI	GATC	3 cut(s)	59, 313, 637
Sau96I	GGNCC	2 cut(s)	520, 538
SchI	GAGTC	2 cut(s)	202, 238
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	111
SfaNI	GCATC	2 cut(s)	439, 508
SfuI	TTCGAA	1 cut(s)	151
SinI	GGWCC	2 cut(s)	520, 538
SmiMI	CAYNNNNRTG	1 cut(s)	504
SpeI	ACTAGT	1 cut(s)	478
SphI	GCATGC	1 cut(s)	499
Sse9I	AATT	9 cut(s)	42, 100, 167, 191, 221, 236, 353, 577, 591
SsiI	CCGC	4 cut(s)	47, 163, 344, 458
SspMI	CTAG	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	615
TaiI	ACGT	2 cut(s)	78, 272
TaqI	TCGA	3 cut(s)	151, 447, 640
TasI	AATT	9 cut(s)	42, 100, 167, 191, 221, 236, 353, 577, 591
TfiI	GAWTC	2 cut(s)	284, 384
Tru1I	TTAA	7 cut(s)	41, 51, 81, 99, 516, 534, 584
Tru9I	TTAA	7 cut(s)	41, 51, 81, 99, 516, 534, 584
TseI	GCWGC	3 cut(s)	250, 335, 379
TspDTI	ATGAA	3 cut(s)	376, 522, 540
VpaK11BI	GGWCC	2 cut(s)	520, 538
XapI	RAATTY	3 cut(s)	167, 353, 577
XceI	RCATGY	1 cut(s)	499
XspI	CTAG	1 cut(s)	479
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.