RchiOBHm_Chr6g0293441

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001867
Physical Location & Seq
Forward (+)
56134385 .. 56135098
714 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 507 bp
ATGGCTCGTTCAATCTCTCATTTTCTCATTACTGCCTTCCTTGTTCTTGTTGCTTTGGATCTCTGCCTTGTTCATGAGTTTGCTTTGAGCTTGGAATTCTTGGAGGCTGAGTTTTTCCAGTTTGGTGCTCTTGGAAGAGGGCTTGACAGTATCAGTCCAAATTTGGCCGGAGGTGGTCCGCCTCCTTCTGGTGCGCAGAAGGCGTTGCTCAACCCTAGCCTGTTAGCGATTATCGATGCAGTAGGAGGGATTCCGAGACCTCTGTTAAACATCAGCCGCGAAAATTTTGCGAGAGGTTTTAACGGCATAGTGGGTTTCAACCTGATCCCTCAGGCAAACACAGTCAATTATCTTTTAGCAGCCTATTCAATCCTTTATATTGGAATAGGAGGCTATGTTGGTAGAATCCGTAACCTTACTACTGTTGCTGATCGCGCGGTAAGACTATATATGAACCCTATTCTCATACTCGAACACGTTCCGTTGTATATGAGACTAATACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

168

Amino Acids

18.22

Weight (kDa)

7.95

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 26 - 141 1.9e-06 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 195
AccII CGCG 3 cut(s) 279, 435, 437
AciI CCGC 3 cut(s) 179, 277, 437
AclWI GGATC 2 cut(s) 66, 319
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 3 cut(s) 95, 160, 283
AfiI CCNNNNNNNGG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 3 cut(s) 12, 319, 369
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 2 cut(s) 250, 487
AlwI GGATC 2 cut(s) 66, 319
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 1 cut(s) 359
ApoI RAATTY 3 cut(s) 95, 160, 283
Asp700I GAANNNNTTC 1 cut(s) 477
AspLEI GCGC 2 cut(s) 196, 437
AspS9I GGNCC 1 cut(s) 176
AvaII GGWCC 1 cut(s) 176
AxyI CCTNAGG 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 371
BceAI ACGGC 1 cut(s) 319
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BcoDI GTCTC 2 cut(s) 250, 487
BfaI CTAG 1 cut(s) 216
BisI GCNGC 2 cut(s) 277, 360
BlsI GCNGC 2 cut(s) 278, 361
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmsI GCATC 1 cut(s) 226
Bsa29I ATCGAT 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 250
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 381, 411
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 118
Bse21I CCTNAGG 1 cut(s) 330
BseCI ATCGAT 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 2 cut(s) 99, 344
BseNI ACTGG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 371
Bsh1236I CGCG 3 cut(s) 279, 435, 437
BshFI GGCC 1 cut(s) 167
BshVI ATCGAT 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 2 cut(s) 250, 487
BsnI GGCC 1 cut(s) 167
Bso31I GGTCTC 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 3 cut(s) 58, 324, 430
BspACI CCGC 3 cut(s) 179, 277, 437
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 2 cut(s) 100, 343
BspDI ATCGAT 1 cut(s) 234
BspFNI CGCG 3 cut(s) 279, 435, 437
BspHI TCATGA 1 cut(s) 73
BspPI GGATC 2 cut(s) 66, 319
BspTNI GGTCTC 1 cut(s) 250
BsrI ACTGG 1 cut(s) 118
BssMI GATC 3 cut(s) 58, 324, 430
Bst4CI ACNGT 3 cut(s) 149, 343, 424
Bst6I CTCTTC 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 108, 330
BstFNI CGCG 3 cut(s) 279, 435, 437
BstHHI GCGC 2 cut(s) 196, 437
BstKTI GATC 3 cut(s) 61, 327, 433
BstMAI GTCTC 2 cut(s) 250, 487
BstMBI GATC 3 cut(s) 58, 324, 430
BstMWI GCNNNNNNNGC 2 cut(s) 200, 434
BstUI CGCG 3 cut(s) 279, 435, 437
BstV1I GCAGC 1 cut(s) 371
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 234
Bsu36I CCTNAGG 1 cut(s) 330
BsuRI GGCC 1 cut(s) 167
BsuTUI ATCGAT 1 cut(s) 234
CciI TCATGA 1 cut(s) 73
CfoI GCGC 2 cut(s) 196, 437
Cfr13I GGNCC 1 cut(s) 176
ClaI ATCGAT 1 cut(s) 234
CviAII CATG 1 cut(s) 74
CviJI RGCY 9 cut(s) 5, 90, 107, 142, 167, 219, 276, 362, 393
CviKI_1 RGCY 9 cut(s) 5, 90, 107, 142, 167, 219, 276, 362, 393
DdeI CTNAG 2 cut(s) 108, 330
DpnI GATC 3 cut(s) 60, 326, 432
DpnII GATC 3 cut(s) 58, 324, 430
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
EciI GGCGGA 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 176
Eco81I CCTNAGG 1 cut(s) 330
EcoRI GAATTC 1 cut(s) 95
FaeI CATG 1 cut(s) 77
FatI CATG 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 277, 360
Fsp4HI GCNGC 2 cut(s) 277, 360
FspBI CTAG 1 cut(s) 216
FspI TGCGCA 1 cut(s) 195
GlaI GCGC 2 cut(s) 195, 436
GluI GCNGC 2 cut(s) 277, 360
HaeIII GGCC 1 cut(s) 167
HapII CCGG 1 cut(s) 168
HhaI GCGC 2 cut(s) 196, 437
Hin1II CATG 1 cut(s) 77
Hin6I GCGC 2 cut(s) 194, 435
HinP1I GCGC 2 cut(s) 194, 435
HinfI GANTC 2 cut(s) 250, 405
HpaII CCGG 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 1 cut(s) 74
HpyAV CCTTC 3 cut(s) 46, 193, 195
HpyCH4III ACNGT 3 cut(s) 149, 343, 424
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 434
HpyF3I CTNAG 2 cut(s) 108, 330
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 1 cut(s) 77
HspAI GCGC 2 cut(s) 194, 435
Kzo9I GATC 3 cut(s) 58, 324, 430
LpnPI CCDG 6 cut(s) 131, 174, 181, 233, 317, 335
Lsp1109I GCAGC 1 cut(s) 371
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 1 cut(s) 410
MalI GATC 3 cut(s) 60, 326, 432
MboI GATC 3 cut(s) 58, 324, 430
MboII GAAGA 1 cut(s) 147
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 4 cut(s) 95, 160, 283, 346
MnlI CCTC 9 cut(s) 97, 131, 164, 192, 239, 270, 287, 339, 383
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 3 cut(s) 266, 300, 505
MspI CCGG 1 cut(s) 168
MvnI CGCG 3 cut(s) 279, 435, 437
MwoI GCNNNNNNNGC 2 cut(s) 200, 434
NdeII GATC 3 cut(s) 58, 324, 430
NlaIII CATG 1 cut(s) 77
NsbI TGCGCA 1 cut(s) 195
PagI TCATGA 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 2 cut(s) 250, 405
PkrI GCNGC 2 cut(s) 278, 361
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 58
SaqAI TTAA 3 cut(s) 266, 300, 505
SatI GCNGC 2 cut(s) 277, 360
Sau3AI GATC 3 cut(s) 58, 324, 430
Sau96I GGNCC 1 cut(s) 176
SduI GDGCHC 1 cut(s) 130
SetI ASST 7 cut(s) 92, 175, 262, 298, 324, 417, 480
SfaNI GCATC 1 cut(s) 226
SinI GGWCC 1 cut(s) 176
Sse9I AATT 4 cut(s) 95, 160, 283, 346
SsiI CCGC 3 cut(s) 179, 277, 437
SspMI CTAG 1 cut(s) 216
TaaI ACNGT 3 cut(s) 149, 343, 424
TaiI ACGT 1 cut(s) 480
TaqI TCGA 2 cut(s) 234, 471
TasI AATT 4 cut(s) 95, 160, 283, 346
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 2 cut(s) 250, 405
Tru1I TTAA 3 cut(s) 266, 300, 505
Tru9I TTAA 3 cut(s) 266, 300, 505
TseI GCWGC 1 cut(s) 359
TspDTI ATGAA 2 cut(s) 62, 467
TspGWI ACGGA 2 cut(s) 398, 471
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 3 cut(s) 95, 160, 283
XmnI GAANNNNTTC 1 cut(s) 477
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.